View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_low_44 (Length: 342)
Name: NF13955_low_44
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_low_44 |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 24 - 331
Target Start/End: Complemental strand, 24893815 - 24893508
Alignment:
| Q |
24 |
agattgaagtcacttattactcccgggagttggcaaaagggtgagcttttgggccgcggttcatttggaactgtatatgaaggaatttctgagtaagtgt |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24893815 |
agattgaagtcacttattactcccgggagttggcaaaagggtgagcttttgggccgcggttcatttggaactgtatatgaaggaatttctgagtaagtgt |
24893716 |
T |
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| Q |
124 |
tgccctctttacttgtgtcttttctcgtttctatcatttgaattttcatagcatgttaaattaacagaaaattactttcaccttctacttctacttacca |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24893715 |
tgccctctttacttgtgtcttttctcgtttctatcatttgaattttcatagcatgttaaattaacagaaaattactttcaccttctacttctacttacca |
24893616 |
T |
|
| Q |
224 |
ctcatcaaaaactctaaaatgagtttcattacaccccacaacattacaccccttttcaaatcttgtatgtggaggctttagtgcatcgagcttcgcagtt |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24893615 |
ctcatcaaaaactctaaaatgagtttcattacaccccacaacattacaccccttttcaaatcttgtatgtggaggctttagtgcatcgagcttcgcagtt |
24893516 |
T |
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| Q |
324 |
tgatgatg |
331 |
Q |
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|||||||| |
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| T |
24893515 |
tgatgatg |
24893508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 24922718 - 24922635
Alignment:
| Q |
39 |
attactcccgggagttggcaaaagggtgagcttttgggccgcggttcatttggaactgtatatgaaggaatttctgagtaagtg |
122 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24922718 |
attactcctgggagttggcaaaagggtgagcttttgggccgtggttcatttggaactgtatatgaaggaatttctgagtaagtg |
24922635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 24998808 - 24998725
Alignment:
| Q |
39 |
attactcccgggagttggcaaaagggtgagcttttgggccgcggttcatttggaactgtatatgaaggaatttctgagtaagtg |
122 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24998808 |
attactcctgggagttggcaaaagggtgagcttttgggccgtggttcatttggaactgtatatgaaggaatttctgagtaagtg |
24998725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 24905641 - 24905545
Alignment:
| Q |
24 |
agattgaagtcacttattactcccgggagttggcaaaagggtgagcttttgggccgcggttcatttggaactgtatatgaaggaatttctgagtaag |
120 |
Q |
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||||||| | || |||||||||| ||||||||| |||||||||| |||||||| | ||||| |||||| ||||||||||||||||||| |||||| |
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| T |
24905641 |
agattgatgccagttattactcctgggagttgggaaaagggtgaacttttgggtagtggttcgtttggatttgtatatgaaggaatttctcagtaag |
24905545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 24904784 - 24904739
Alignment:
| Q |
116 |
gtaagtgttgccctctttacttgtgtcttttctcgtttctatcatt |
161 |
Q |
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|||||||||||||||||||||||| |||| | ||||||||| |||| |
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| T |
24904784 |
gtaagtgttgccctctttacttgtatcttatttcgtttctaccatt |
24904739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 35781 - 35695
Alignment:
| Q |
39 |
attactcccgggagttggcaaaa-gggtgagctttt-gggccgcggttcatttggaactgtatatg-aaggaatttctgagtaagtg |
122 |
Q |
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|||||||| |||||||||||||| |||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35781 |
attactcctgggagttggcaaaaagggtgagctttttgggccgtggttcatttggaactgtatatgtaaggaatttctgagtaagtg |
35695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 33023096 - 33023027
Alignment:
| Q |
54 |
tggcaaaagggtgagcttttgggccgcggttcatttggaactgtatatgaaggaatttctgagtaagtgt |
123 |
Q |
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||||||||||||| ||||||| | |||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
33023096 |
tggcaaaagggtggctttttggggggtggttcatttggatctgtctatgaaggaatttctgagtaagtgt |
33023027 |
T |
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