View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13955_low_48 (Length: 315)

Name: NF13955_low_48
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13955_low_48
NF13955_low_48
[»] chr2 (3 HSPs)
chr2 (1-308)||(33679303-33679610)
chr2 (1-308)||(33686770-33687077)
chr2 (1-308)||(33703824-33704131)


Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 33679610 - 33679303
Alignment:
Q  1 cgccaccccaattttgctctccatgactcccccattgattttctcaaataatttgtcccctggcttcatgtttttctcatccaagaaagggttgaaacca 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33679610 cgccaccccaattttgctctccatgactcccccgttgattttctcaaataatttgtcccctggcttcatgtttttctcatccaagaaagggttgaaacca 33679511  T
Q  101 tgccttttaaggttgtcataaagaagagttgctaccgttctctttgtgtccgggcttctatggttgaggaacacatcgcatggctccatcatacgtcttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33679510 tgccttttaaggttgtcataaagaagagttgctaccgttctctttgtgtccgggcttctatggttgaggaacacatcgcatggctccatcatacgtcttg 33679411  T
Q  201 ccatcatttgtgtaattttcctttgatggcttaataagctcttcattgccaaagaagtttgcatattgatacaataaagggtgtgtggttgtactttaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33679410 ccatcatttgtgtaattttcctttgatggcttaataagctcttcattgccaaagaagtttgcatattgatacaataaagggtgtgtggttgtactttaac 33679311  T
Q  301 ctttgatt 308  Q
    ||||||||    
T  33679310 ctttgatt 33679303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 33687077 - 33686770
Alignment:
Q  1 cgccaccccaattttgctctccatgactcccccattgattttctcaaataatttgtcccctggcttcatgtttttctcatccaagaaagggttgaaacca 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33687077 cgccaccccaattttgctctccatgactcccccgttgattttctcaaataatttgtcccctggcttcatgtttttctcatccaagaaagggttgaaacca 33686978  T
Q  101 tgccttttaaggttgtcataaagaagagttgctaccgttctctttgtgtccgggcttctatggttgaggaacacatcgcatggctccatcatacgtcttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33686977 tgccttttaaggttgtcataaagaagagttgctaccgttctctttgtgtccgggcttctatggttgaggaacacatcgcatggctccatcatacgtcttg 33686878  T
Q  201 ccatcatttgtgtaattttcctttgatggcttaataagctcttcattgccaaagaagtttgcatattgatacaataaagggtgtgtggttgtactttaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33686877 ccatcatttgtgtaattttcctttgatggcttaataagctcttcattgccaaagaagtttgcatattgatacaataaagggtgtgtggttgtactttaac 33686778  T
Q  301 ctttgatt 308  Q
    ||||||||    
T  33686777 ctttgatt 33686770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 33704131 - 33703824
Alignment:
Q  1 cgccaccccaattttgctctccatgactcccccattgattttctcaaataatttgtcccctggcttcatgtttttctcatccaagaaagggttgaaacca 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33704131 cgccaccccaattttgctctccatgactcccccgttgattttctcaaataatttgtcccctggcttcatgtttttctcatccaagaaagggttgaaacca 33704032  T
Q  101 tgccttttaaggttgtcataaagaagagttgctaccgttctctttgtgtccgggcttctatggttgaggaacacatcgcatggctccatcatacgtcttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33704031 tgccttttaaggttgtcataaagaagagttgctaccgttctctttgtgtccgggcttctatggttgaggaacacatcgcatggctccatcatacgtcttg 33703932  T
Q  201 ccatcatttgtgtaattttcctttgatggcttaataagctcttcattgccaaagaagtttgcatattgatacaataaagggtgtgtggttgtactttaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33703931 ccatcatttgtgtaattttcctttgatggcttaataagctcttcattgccaaagaagtttgcatattgatacaataaagggtgtgtggttgtactttaac 33703832  T
Q  301 ctttgatt 308  Q
    ||||||||    
T  33703831 ctttgatt 33703824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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