View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13955_low_5 (Length: 656)

Name: NF13955_low_5
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13955_low_5
NF13955_low_5
[»] chr3 (1 HSPs)
chr3 (1-639)||(42931301-42931937)


Alignment Details
Target: chr3 (Bit Score: 612; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 1 - 639
Target Start/End: Original strand, 42931301 - 42931937
Alignment:
Q  1 tcaacattgaattggatccttaatgatcaatcaataattataaaatatcattcatcaagtaaaaatcccctacaaacgaataacacagtttgatgatcga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  42931301 tcaacattgaattggatccttaatgatcaatcaataattataacaaatcattcatcaagtaaaaatcccctacaaacgaataaca--gtttgatgatcga 42931398  T
Q  101 tcgatcaatccaattagtgctaatgatcgtggctttagccctatacagatccacacctttgtttgatatagataatcatatcaacttgaaaaaattgctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42931399 tcgatcaatccaattagtgctaatgatcgtggctttagccctatacagatccacacctttgtttgatatagataatcatatcaacttgaaaaaattgctt 42931498  T
Q  201 atagaataaaactgtacaacatcatgaatttaattaattaatcaaatcgattaatcaataatcactgtcgcaaccaatgactttgcaatagccaacaatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42931499 atagaataaaactgtacaacatcatgaatttaattaattaatcaaatcgattaatcaataatcactgtctcaaccaatgactttgcaatagccaacaatt 42931598  T
Q  301 cttaagttgagactgtgcggtttctccaaagctcttcactctcaccaaacaaaaatgggtcgagaaaacacccattcctgaacccggtccagacccaacc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42931599 cttaagttgagactgtgcggtttctccaaagctcttcactctcaccaaacaaaaatgggtcgagaaaacacccattcctgaacccggtccagacccaacc 42931698  T
Q  401 cggctcgttttcaacaaataacaaaccgggtcacacccaacaccttttccttgaaccacaaccccccacatcttcgtcgttctttctttcaaccctcttt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42931699 cggctcgttttcaacaaataacaaaccgggtcacacccaacaccttttccttgaaccacaaccccccacatcttcgtcgttctttctttcagccctcttt 42931798  T
Q  501 caccaccgtcctccgcctcatcttcccccaactcctccacaaatataaccccctccggcatcggagtttcaccggtctcccatctttccttcacggcctc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42931799 caccaccgtcctccgcctcatcttcccccaactcctccacaaatataaccccctccggcatcggagtttcaccggtctcccatctttccttcacggcctc 42931898  T
Q  601 ccaatcctccaccttctccgtcgctaacttcgtagtttc 639  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42931899 ccaatcctccaccttctccgtcgctaacttcgtagtttc 42931937  T

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