View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13955_low_50 (Length: 312)

Name: NF13955_low_50
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13955_low_50
NF13955_low_50
[»] chr2 (5 HSPs)
chr2 (4-288)||(35209052-35209335)
chr2 (110-270)||(27176306-27176467)
chr2 (147-269)||(40075397-40075520)
chr2 (173-279)||(10211923-10212029)
chr2 (174-258)||(23771191-23771275)
[»] chr7 (4 HSPs)
chr7 (92-255)||(48344799-48344963)
chr7 (173-279)||(24269112-24269218)
chr7 (124-279)||(9359329-9359485)
chr7 (173-258)||(3963709-3963794)
[»] chr4 (4 HSPs)
chr4 (65-280)||(29510254-29510468)
chr4 (124-279)||(54551197-54551353)
chr4 (173-279)||(26430587-26430693)
chr4 (174-258)||(48445307-48445391)
[»] chr8 (2 HSPs)
chr8 (110-257)||(14221153-14221301)
chr8 (173-258)||(32284180-32284265)
[»] chr1 (1 HSPs)
chr1 (61-279)||(46091936-46092155)
[»] scaffold0004 (1 HSPs)
scaffold0004 (61-258)||(214989-215187)
[»] chr5 (3 HSPs)
chr5 (187-267)||(23030253-23030333)
chr5 (173-258)||(9610917-9611002)
chr5 (62-154)||(27454001-27454093)
[»] chr6 (3 HSPs)
chr6 (61-255)||(7437705-7437900)
chr6 (173-279)||(7606832-7606938)
chr6 (173-279)||(32956077-32956183)
[»] scaffold0201 (1 HSPs)
scaffold0201 (61-270)||(18094-18304)
[»] scaffold0016 (1 HSPs)
scaffold0016 (173-258)||(185779-185864)
[»] scaffold0011 (1 HSPs)
scaffold0011 (61-279)||(54998-55217)
[»] scaffold0607 (1 HSPs)
scaffold0607 (177-279)||(4314-4416)
[»] scaffold0577 (1 HSPs)
scaffold0577 (202-258)||(3614-3670)


Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 288
Target Start/End: Complemental strand, 35209335 - 35209052
Alignment:
Q  4 attatacttcatggttcacttattaataagattgagaaaatgatgaattcnnnnnnngtggggtcataattaatcaaactctcaaggattgcactggttg 103  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||        |||||||||||||| |||||||||||||||||||||| |||||    
T  35209335 attatacttcctgattcacttattaataagattgagaaaatgatgaatt-tttttttgtggggtcataattcatcaaactctcaaggattgcaccggttg 35209237  T
Q  104 tcatgagaaagactttctactcctaagatttttggtggtatgggttttaaaagttttaaggttttaacgtggctatggttggcaagtaggcttcaaaatt 203  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||    
T  35209236 tcatgagaaagactttctactcctaaggtttttggtggtatgggttttaaaagtcttaaggctttaacatggctatggttggcaagtaggcttcaaaatt 35209137  T
Q  204 ggtttctaatgtagactctcttatcacccgtttactcaaagcaaaatattttcctagaggtgattatcatggagctgatttaggc 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35209136 ggtttctaatgtagactctcttatcacccgtttactcaaagcaaaatgttttcctagaggtgattatcatggagctgatttaggc 35209052  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 270
Target Start/End: Original strand, 27176306 - 27176467
Alignment:
Q  110 gaaagactttctactcctaagatttttggtggtatgggttttaaaagttttaagg-ttttaacgtggctatggttggcaagtaggcttcaaaattggttt 208  Q
    ||||||||||| ||||||||| | |||||||| ||| ||||||| |||||||||| ||||||  ||||||||||||||||| ||| ||  || || ||||    
T  27176306 gaaagactttccactcctaaggtgtttggtggaatgtgttttaagagttttaaggcttttaatatggctatggttggcaagcaggtttgcaagtttgttt 27176405  T
Q  209 ctaatgtagactctcttatcacccgtttactcaaagcaaaatattttcctagaggtgattat 270  Q
    ||||   ||| | ||| |||||||||||||| ||||| ||||||||| || |||||||||||    
T  27176406 ctaaatcagagtgtctaatcacccgtttactgaaagctaaatatttttctcgaggtgattat 27176467  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 147 - 269
Target Start/End: Complemental strand, 40075520 - 40075397
Alignment:
Q  147 gttttaaaagttttaaggt-tttaacgtggctatggttggcaagtaggcttcaaaattggtttctaatgtagactctcttatcacccgtttactcaaagc 245  Q
    ||||||||||||||||||| |||||  ||| |||||||| |||| ||||||  || ||||||||||||  ||| ||| |  |||| ||||||||||||||    
T  40075520 gttttaaaagttttaaggtatttaatatggttatggttgacaaggaggcttggaagttggtttctaatccagagtctttattcacacgtttactcaaagc 40075421  T
Q  246 aaaatattttcctagaggtgatta 269  Q
    |||||| ||| ||||| |||||||    
T  40075420 aaaatacttttctagatgtgatta 40075397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 279
Target Start/End: Original strand, 10211923 - 10212029
Alignment:
Q  173 tggctatggttggcaagtaggcttcaaaattggtttctaatgtagactctcttatcacccgtttactcaaagcaaaatattttcctagaggtgattatca 272  Q
    ||||||||||||||||| ||||||  || |||||||||  |  ||| ||||| ||||| |||||||||||||| |||||||||||| || ||| ||||      
T  10211923 tggctatggttggcaagcaggcttggaagttggtttcttctccagagtctctaatcactcgtttactcaaagctaaatattttcctcgaagtggttattt 10212022  T
Q  273 tggagct 279  Q
    |||||||    
T  10212023 tggagct 10212029  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 23771275 - 23771191
Alignment:
Q  174 ggctatggttggcaagtaggcttcaaaattggtttctaatgtagactctcttatcacccgtttactcaaagcaaaatattttcct 258  Q
    |||||||||||||||| ||||||  || |||||||||  |  ||| ||||| ||||| |||||||||||| | ||||||||||||    
T  23771275 ggctatggttggcaagcaggcttggaagttggtttcttctccagagtctctaatcactcgtttactcaaaactaaatattttcct 23771191  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 255
Target Start/End: Original strand, 48344799 - 48344963
Alignment:
Q  92 ttgcactggttgtcatgagaaagactttctactcctaagatttttggtggtatgggttttaaaagttttaagg-ttttaacgtggctatggttggcaagt 190  Q
    ||||||||| |||| || ||||||||||| ||||||||| | |||||||| ||| ||||||| |||| ||||| ||||||||||| ||||||||||| |     
T  48344799 ttgcactggatgtcttgggaaagactttccactcctaaggtgtttggtggaatgagttttaagagttgtaaggcttttaacgtggatatggttggcatgc 48344898  T
Q  191 aggcttcaaaattggtttctaatgtagactctcttatcacccgtttactcaaagcaaaatatttt 255  Q
    ||||||  || ||||||||||||  | | ||||| || ||| ||||||||||||| |||||||||    
T  48344899 aggcttgcaagttggtttctaattcaaagtctctaattacctgtttactcaaagctaaatatttt 48344963  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 279
Target Start/End: Complemental strand, 24269218 - 24269112
Alignment:
Q  173 tggctatggttggcaagtaggcttcaaaattggtttctaatgtagactctcttatcacccgtttactcaaagcaaaatattttcctagaggtgattatca 272  Q
    ||||||||||||||||||||||||  || |||||||||  |  | | ||||| ||||| |||||||||||||  |||||||||||| || ||||||||      
T  24269218 tggctatggttggcaagtaggcttggaagttggtttcttctccaaagtctctaatcactcgtttactcaaagataaatattttcctcgaagtgattattt 24269119  T
Q  273 tggagct 279  Q
    |||||||    
T  24269118 tggagct 24269112  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 124 - 279
Target Start/End: Original strand, 9359329 - 9359485
Alignment:
Q  124 tcctaagatttttggtggtatgggttttaaaagttttaaggtttt-aacgtggctatggttggcaagtaggcttcaaaattggtttctaatgtagactct 222  Q
    ||||||| | ||||| ||||||| ||||||  || |||||| ||| ||  ||||||||||||| ||| ||||||  || |||||||||  |  ||| |||    
T  9359329 tcctaaggtgtttggaggtatggattttaagggtcttaaggctttcaatatggctatggttgggaagcaggcttggaagttggtttcttctccagagtct 9359428  T
Q  223 cttatcacccgtttactcaaagcaaaatattttcctagaggtgattatcatggagct 279  Q
    || ||||| |||||||||||||| |||||||||||| || |||| |||  |||||||    
T  9359429 ctgatcactcgtttactcaaagctaaatattttcctcgaagtgactattttggagct 9359485  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 258
Target Start/End: Complemental strand, 3963794 - 3963709
Alignment:
Q  173 tggctatggttggcaagtaggcttcaaaattggtttctaatgtagactctcttatcacccgtttactcaaagcaaaatattttcct 258  Q
    ||||||||||||| ||| ||||||  || |||||||||  |  ||| ||||| ||||| |||||||||||||| ||||||||||||    
T  3963794 tggctatggttggtaagcaggcttggaagttggtttcttctccagagtctctaatcactcgtttactcaaagctaaatattttcct 3963709  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 280
Target Start/End: Original strand, 29510254 - 29510468
Alignment:
Q  65 ggtcataattaatcaaactctcaaggattgcactggttgtcatgagaaagactttctactcctaagatttttggtggtatgggttttaaaagttttaagg 164  Q
    |||||||||| |||||||||    ||||||| ||||||||| || ||| ||||||| ||||| ||| ||||||| |||||||||||||||||| ||||||    
T  29510254 ggtcataattcatcaaactcatggggattgctctggttgtcttgggaa-gactttccactcccaaggtttttggcggtatgggttttaaaagtcttaagg 29510352  T
Q  165 -ttttaacgtggctatggttggcaagtaggcttcaaaattggtttctaatgtagactctcttatcacccgtttactcaaagcaaaatattttcctagagg 263  Q
     ||||||| ||||||  || |  ||| || | |  || |||||||||||| |||| ||| | ||||| |||| ||||||||| |||||||||| ||||      
T  29510353 cttttaacatggctacagtcgataagaagacatggaagttggtttctaatctagaatctttcatcactcgttcactcaaagctaaatattttcatagaaa 29510452  T
Q  264 tgattatcatggagctg 280  Q
    | |||||||||||||||    
T  29510453 t-attatcatggagctg 29510468  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 279
Target Start/End: Original strand, 54551197 - 54551353
Alignment:
Q  124 tcctaagatttttggtggtatgggttttaaaagttttaaggtttt-aacgtggctatggttggcaagtaggcttcaaaattggtttctaatgtagactct 222  Q
    ||||||| ||||||| |||||| |||||||  || |||||| ||| ||  | ||||||||||||||| ||||||  || |||||||||  |  ||| |||    
T  54551197 tcctaaggtttttggaggtatgtgttttaagggtcttaaggctttcaatatagctatggttggcaagcaggcttggaagttggtttcttctccagagtct 54551296  T
Q  223 cttatcacccgtttactcaaagcaaaatattttcctagaggtgattatcatggagct 279  Q
    || ||||| |||||||||||||| |||||||||||| || ||||||||  |||||||    
T  54551297 ctaatcactcgtttactcaaagctaaatattttcctcgaagtgattattttggagct 54551353  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 279
Target Start/End: Complemental strand, 26430693 - 26430587
Alignment:
Q  173 tggctatggttggcaagtaggcttcaaaattggtttctaatgtagactctcttatcacccgtttactcaaagcaaaatattttcctagaggtgattatca 272  Q
    ||||||||||||| ||| || |||  || |||||||||  |  ||| ||||| ||||| |||||||||||||| |||||||||||| || |||| |||      
T  26430693 tggctatggttggtaagcagacttggaagttggtttcttctccagagtctctaatcactcgtttactcaaagctaaatattttcctcgaagtgactattt 26430594  T
Q  273 tggagct 279  Q
    |||||||    
T  26430593 tggagct 26430587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 48445307 - 48445391
Alignment:
Q  174 ggctatggttggcaagtaggcttcaaaattggtttctaatgtagactctcttatcacccgtttactcaaagcaaaatattttcct 258  Q
    ||||||| |||||||| ||||||  || |||||||||  |  | | ||||| ||||| |||||||||||||| ||||||||||||    
T  48445307 ggctatgtttggcaagcaggcttggaagttggtttcttctccaaagtctctaatcactcgtttactcaaagctaaatattttcct 48445391  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 110 - 257
Target Start/End: Complemental strand, 14221301 - 14221153
Alignment:
Q  110 gaaagactttctactcctaagatttttggtggtatgggttttaaaagttttaaggt-tttaacgtggctatggttggcaagtaggcttcaaaattggttt 208  Q
    |||||| |||| | ||||||||| |||||||| ||||||||||| |||||||||   |||||  ||||||||||||||||| |  ||| ||| ||| |||    
T  14221301 gaaagaatttccaatcctaagatgtttggtggaatgggttttaagagttttaagacatttaatatggctatggttggcaagcaatcttgaaagttgattt 14221202  T
Q  209 ctaatgtagactctcttatcacccgtttactcaaagcaaaatattttcc 257  Q
    ||||| |||| ||| | |||||| ||||||||||||| ||||| |||||    
T  14221201 ctaatctagagtctttaatcacctgtttactcaaagctaaatactttcc 14221153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 258
Target Start/End: Complemental strand, 32284265 - 32284180
Alignment:
Q  173 tggctatggttggcaagtaggcttcaaaattggtttctaatgtagactctcttatcacccgtttactcaaagcaaaatattttcct 258  Q
    ||||||||||||||||| ||||||  || |||||||||  |  ||| ||| | ||||| |||||| ||||||| ||||||||||||    
T  32284265 tggctatggttggcaagcaggcttggaagttggtttcttctccagagtctttaatcactcgtttattcaaagctaaatattttcct 32284180  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 279
Target Start/End: Complemental strand, 46092155 - 46091936
Alignment:
Q  61 gtggggtcataattaatcaaactctcaaggattgcactggttgtcatgagaaagactttctactcctaagatttttggtggtatgggttttaaaagtttt 160  Q
    |||||||||||||| | ||||||||| ||||||||||||| | || || ||  |||||||   ||| ||| | ||||| ||||||||  ||||  |  ||    
T  46092155 gtggggtcataattcagcaaactctcgaggattgcactggctatcttgggagcgactttcagttccaaaggtgtttggaggtatgggagttaagggcctt 46092056  T
Q  161 aagg-ttttaacgtggctatggttggcaagtaggcttcaaaattggtttctaatgtagactctcttatcacccgtttactcaaagcaaaatattttccta 259  Q
    |||| ||||||  ||||||||||||| ||| | ||||  || |||||||||  | |||| ||||| ||||| |||||||||||||| ||||||||||||     
T  46092055 aaggcttttaatatggctatggttggtaagcatgcttggaagttggtttcttctctagagtctctaatcactcgtttactcaaagctaaatattttcctc 46091956  T
Q  260 gaggtgattatcatggagct 279  Q
    || |||| |||  |||||||    
T  46091955 gaagtgactattttggagct 46091936  T

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Target: scaffold0004 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 258
Target Start/End: Original strand, 214989 - 215187
Alignment:
Q  61 gtggggtcataattaatcaaactctcaaggattgcactggttgtcatgagaaagactttctactcctaagatttttggtggtatgggttttaaaagtttt 160  Q
    |||||||||||||| |   || |||| ||| ||||||||| | || || ||| | ||||| | ||||||| | ||||| | ||||||||||||  |  ||    
T  214989 gtggggtcataattcagtgaattctcgaggtttgcactggctatcttgggaacgcctttcaattcctaaggtgtttggagctatgggttttaagggactt 215088  T
Q  161 aagg-ttttaacgtggctatggttggcaagtaggcttcaaaattggtttctaatgtagactctcttatcacccgtttactcaaagcaaaatattttcct 258  Q
    |||| ||||||  ||||||||||||||||| ||||||  || ||||||||| ||  ||| ||||| ||||| ||||||||| |||| ||||||||||||    
T  215089 aaggattttaatatggctatggttggcaagcaggcttggaagttggtttctgatccagagtctctaatcactcgtttactcgaagctaaatattttcct 215187  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 23030253 - 23030333
Alignment:
Q  187 aagtaggcttcaaaattggtttctaatgtagactctcttatcacccgtttactcaaagcaaaatattttcctagaggtgat 267  Q
    |||||||||| ||| |||||||||| | |||| ||||| ||||| |||||||||||||| |||||||||| | ||||||||    
T  23030253 aagtaggcttgaaagttggtttctactctagagtctctaatcactcgtttactcaaagctaaatattttcttcgaggtgat 23030333  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 258
Target Start/End: Complemental strand, 9611002 - 9610917
Alignment:
Q  173 tggctatggttggcaagtaggcttcaaaattggtttctaatgtagactctcttatcacccgtttactcaaagcaaaatattttcct 258  Q
    ||||||||||||| ||| ||||||  || |||||||||  |  ||| ||||| ||||| |||||||||||||| ||||||||||||    
T  9611002 tggctatggttggtaagcaggcttggaagttggtttcttctccagagtctctaatcactcgtttactcaaagctaaatattttcct 9610917  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 27454093 - 27454001
Alignment:
Q  62 tggggtcataattaatcaaactctcaaggattgcactggttgtcatgagaaagactttctactcctaagatttttggtggtatgggttttaaa 154  Q
    ||||||||||||| | |||| |||| ||||||||||||| | || || ||| | |||||   ||||||| | ||||| |||||||||||||||    
T  27454093 tggggtcataattcagcaaattctcgaggattgcactggctatcttgggaacgcctttcagttcctaaggtgtttggaggtatgggttttaaa 27454001  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 255
Target Start/End: Complemental strand, 7437900 - 7437705
Alignment:
Q  61 gtggggtcataattaatcaaactctcaaggattgcactggttgtcatgagaaagactttctactcctaagatttttggtggtatgggttttaaaagtttt 160  Q
    |||||||||||||| | | || |||| ||||||||||||| | || ||  || | |||||   ||||||| | ||||| ||||||||||||||| |  ||    
T  7437900 gtggggtcataattcagcgaattctcgaggattgcactggctatcttggaaacgcctttcagttcctaaggtgtttggaggtatgggttttaaaggcctt 7437801  T
Q  161 aaggtttt-aacgtggctatggttggcaagtaggcttcaaaattggtttctaatgtagactctcttatcacccgtttactcaaagcaaaatatttt 255  Q
    |||| ||| ||  ||||||||||||| ||| ||||||  || || ||||||  || ||| ||||| ||||| |||||||||||||| |||||||||    
T  7437800 aaggctttcaatatggctatggttggaaagcaggcttggaagttagtttcttctgcagagtctctaatcactcgtttactcaaagctaaatatttt 7437705  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 279
Target Start/End: Original strand, 7606832 - 7606938
Alignment:
Q  173 tggctatggttggcaagtaggcttcaaaattggtttctaatgtagactctcttatcacccgtttactcaaagcaaaatattttcctagaggtgattatca 272  Q
    ||||||||||||||||| || |||  || |||||||||  |  ||| ||||| ||||| |||||||||||||| |||||||||||| || |||| |||      
T  7606832 tggctatggttggcaagcagacttggaagttggtttcttctccagagtctctaatcactcgtttactcaaagctaaatattttcctcgaagtgactattt 7606931  T
Q  273 tggagct 279  Q
    |||||||    
T  7606932 tggagct 7606938  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 279
Target Start/End: Original strand, 32956077 - 32956183
Alignment:
Q  173 tggctatggttggcaagtaggcttcaaaattggtttctaatgtagactctcttatcacccgtttactcaaagcaaaatattttcctagaggtgattatca 272  Q
    ||||||||||||| ||| ||||||  || |||||||||  |  ||| ||||| ||||| |||||||||||||| |||||||||||| || |||| |||      
T  32956077 tggctatggttggtaagcaggcttggaagttggtttcttctccagagtctctaatcactcgtttactcaaagctaaatattttcctcgaagtgactattt 32956176  T
Q  273 tggagct 279  Q
    |||||||    
T  32956177 tggagct 32956183  T

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Target: scaffold0201 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 270
Target Start/End: Original strand, 18094 - 18304
Alignment:
Q  61 gtggggtcataattaatcaaactctcaaggattgcactggttgtcatgagaaagactttctactcctaagatttttggtggtatgggttttaaaagtttt 160  Q
    |||||| ||||||| | ||||||||  |||||| |||||| |||| || |||||||| ||   ||||||| | ||||||   |||||||| || ||| ||    
T  18094 gtggggacataattcagcaaactcttgaggattacactggctgtcttgggaaagactatccgttcctaaggtgtttggtcagatgggtttcaagagtctt 18193  T
Q  161 aaggt-tttaacgtggctatggttggcaagtaggcttcaaaattggtttctaatgtagactctcttatcacccgtttactcaaagcaaaatattttccta 259  Q
    ||||  |||||  ||  ||||||| ||||| | ||||  || |||||||||| |  ||| ||||| ||||| |||||||| ||||| ||||||||||||     
T  18194 aaggcatttaatatgaatatggttagcaagcaagcttggaagttggtttctacttaagagtctctaatcactcgtttactgaaagctaaatattttcctc 18293  T
Q  260 gaggtgattat 270  Q
     ||||||||||    
T  18294 aaggtgattat 18304  T

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Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 185779 - 185864
Alignment:
Q  173 tggctatggttggcaagtaggcttcaaaattggtttctaatgtagactctcttatcacccgtttactcaaagcaaaatattttcct 258  Q
    ||||||||||||| ||| ||||||  || |||||||||  |  ||| ||||| ||||| |||||||||||||| ||||||||||||    
T  185779 tggctatggttggtaagcaggcttggaagttggtttcttctccagagtctctaatcactcgtttactcaaagctaaatattttcct 185864  T

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Target: scaffold0011 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 279
Target Start/End: Original strand, 54998 - 55217
Alignment:
Q  61 gtggggtcataattaatcaaactctcaaggattgcactggttgtcatgagaaagactttctactcctaagatttttggtggtatgggttttaaaagtttt 160  Q
    |||||||||||||| | | || | || ||||||||||||| | || || ||| | |||||   ||||||| | ||||| ||||| ||||||||  |  ||    
T  54998 gtggggtcataattcagcgaattgtcgaggattgcactggctatcttgggaacgcctttcagttcctaaggtgtttggaggtatcggttttaagggcctt 55097  T
Q  161 aaggtttt-aacgtggctatggttggcaagtaggcttcaaaattggtttctaatgtagactctcttatcacccgtttactcaaagcaaaatattttccta 259  Q
    |||| ||| ||  ||||||||||||| ||| ||||||  || |||||||||  |  ||| ||||| ||| | |||||||||||||| ||||||||||||     
T  55098 aaggctttcaatatggctatggttggaaagcaggcttggaagttggtttcttctccagaatctctaatccctcgtttactcaaagctaaatattttcctt 55197  T
Q  260 gaggtgattatcatggagct 279  Q
    || |||| |||  |||||||    
T  55198 gaagtgactattttggagct 55217  T

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Target: scaffold0607 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 279
Target Start/End: Original strand, 4314 - 4416
Alignment:
Q  177 tatggttggcaagtaggcttcaaaattggtttctaatgtagactctcttatcacccgtttactcaaagcaaaatattttcctagaggtgattatcatgga 276  Q
    ||||||||| ||| || |||  || |||||||||  | |||| ||||||||||| | |||||||||||| |||||||||||| || |||| |||  ||||    
T  4314 tatggttggtaagaagacttggaagttggtttcttctctagagtctcttatcactcatttactcaaagccaaatattttcctcgaagtgactattttgga 4413  T
Q  277 gct 279  Q
    |||    
T  4414 gct 4416  T

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Target: scaffold0577 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 3670 - 3614
Alignment:
Q  202 ttggtttctaatgtagactctcttatcacccgtttactcaaagcaaaatattttcct 258  Q
    |||||||||  | |||| ||||| ||||| |||||||||||||| ||||||||||||    
T  3670 ttggtttcttctctagagtctctaatcactcgtttactcaaagctaaatattttcct 3614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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