View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_low_52 (Length: 284)
Name: NF13955_low_52
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 44083899 - 44084162
Alignment:
| Q |
5 |
gaagaatattactagagatgcacataaataaagttatgtataaagatgataatattttttgcaagcaaattcagctaagtattgcttaggattaaagtgt |
104 |
Q |
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| T |
44083899 |
gaagaatactactagagatgcacataaataaagttatgtataaagatgataatattttttgcaagcaaattcagctaagtattgcttagggttaaagtgt |
44083998 |
T |
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| Q |
105 |
atgtgtattgtacagggaacaatcattatatggtacggcaggaatcaacagatagtaaacaaataaaccgacttcaaattgattgataatatatacatcg |
204 |
Q |
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| T |
44083999 |
atgtgtattgtacagggaacaatcattatatggtacggcaggaatcaacagatagtaaacaaataaaccgacttcaaattgattgataatatatacatca |
44084098 |
T |
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| Q |
205 |
cactcatataataatgtatccactacctaattttatttttgttttgaaaaatccgaaaggaacc |
268 |
Q |
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| T |
44084099 |
cactcatataataatgtatccactatctaattttatttttgttttgaaaaatcccaaaggaacc |
44084162 |
T |
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