View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13955_low_53 (Length: 276)

Name: NF13955_low_53
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13955_low_53
NF13955_low_53
[»] chr8 (2 HSPs)
chr8 (1-255)||(36947015-36947269)
chr8 (1-41)||(5718451-5718491)
[»] chr4 (4 HSPs)
chr4 (1-44)||(24060640-24060683)
chr4 (1-39)||(16528630-16528668)
chr4 (41-74)||(2765331-2765364)
chr4 (1-41)||(42504198-42504238)
[»] chr7 (4 HSPs)
chr7 (1-41)||(44601064-44601104)
chr7 (1-41)||(20125654-20125694)
chr7 (1-41)||(21882773-21882813)
chr7 (1-41)||(46413747-46413787)
[»] chr1 (7 HSPs)
chr1 (1-41)||(10061656-10061696)
chr1 (1-61)||(23906591-23906650)
chr1 (1-41)||(43537149-43537189)
chr1 (1-44)||(26470008-26470051)
chr1 (1-34)||(33077751-33077784)
chr1 (1-41)||(21540138-21540178)
chr1 (1-41)||(29657428-29657468)
[»] scaffold0122 (1 HSPs)
scaffold0122 (9-44)||(18706-18741)
[»] chr2 (3 HSPs)
chr2 (1-35)||(3167960-3167994)
chr2 (1-39)||(14131220-14131258)
chr2 (1-41)||(38320204-38320244)
[»] chr5 (2 HSPs)
chr5 (1-38)||(7547329-7547366)
chr5 (1-41)||(3040264-3040304)
[»] chr3 (2 HSPs)
chr3 (1-41)||(1632872-1632912)
chr3 (1-41)||(34905910-34905950)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 36947269 - 36947015
Alignment:
Q  1 aatgatgtgtaattaaagaaatgtgttagcaaatacactgtttttgatacattttgtcactgtatcaagcattttcctaagatttaattaagtgagataa 100  Q
    |||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36947269 aatgatgtataattaaagaaatgtgttaataaatacactgtttttgatacattttgtcactgtatcaagcatttccctaagatttaattaagtgagataa 36947170  T
Q  101 cagatttggccaatgtaattctaaccgaacctgtaaatcctccgacagcttgagattgatttgataaaaaacaatagaaaataaattgacactagtagta 200  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  36947169 cagatttggccaaagtaattctaaccgaacctgtaaatcctcagacaacttgagattgatttgataaaaaacaaaagaaaataaattgacaccagtagta 36947070  T
Q  201 acgtaaacttcaacttatcaagagtgtcatgaagagggtcatttgagccacatgt 255  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36947069 acgtaaacttcaacttatcaagagtgtcatcaagagggtcatttgagccacatgt 36947015  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 5718491 - 5718451
Alignment:
Q  1 aatgatgtgtaattaaagaaatgtgttagcaaatacactgt 41  Q
    |||| ||||||||||| ||||||||||||||||||||||||    
T  5718491 aatggtgtgtaattaaggaaatgtgttagcaaatacactgt 5718451  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 24060640 - 24060683
Alignment:
Q  1 aatgatgtgtaattaaagaaatgtgttagcaaatacactgtttt 44  Q
    |||| ||||||||||| |||||||||||||||||||||||||||    
T  24060640 aatggtgtgtaattaaggaaatgtgttagcaaatacactgtttt 24060683  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 16528630 - 16528668
Alignment:
Q  1 aatgatgtgtaattaaagaaatgtgttagcaaatacact 39  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  16528630 aatggtgtgtaattaaagaaatgtgttaacaaatacact 16528668  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 2765364 - 2765331
Alignment:
Q  41 tttttgatacattttgtcactgtatcaagcattt 74  Q
    ||||||||||||||||||||| ||||||||||||    
T  2765364 tttttgatacattttgtcactatatcaagcattt 2765331  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 42504238 - 42504198
Alignment:
Q  1 aatgatgtgtaattaaagaaatgtgttagcaaatacactgt 41  Q
    |||||||||||||||| |||| |||||| ||||||||||||    
T  42504238 aatgatgtgtaattaaggaaaggtgttaacaaatacactgt 42504198  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 44601064 - 44601104
Alignment:
Q  1 aatgatgtgtaattaaagaaatgtgttagcaaatacactgt 41  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  44601064 aatgatgtgtaattaagaaaatgtgttagcaaatacactgt 44601104  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 20125654 - 20125694
Alignment:
Q  1 aatgatgtgtaattaaagaaatgtgttagcaaatacactgt 41  Q
    |||| |||||||||||||||| || ||||||||||||||||    
T  20125654 aatggtgtgtaattaaagaaaggtattagcaaatacactgt 20125694  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 21882813 - 21882773
Alignment:
Q  1 aatgatgtgtaattaaagaaatgtgttagcaaatacactgt 41  Q
    |||| ||||||||||| |||| |||||||||||||||||||    
T  21882813 aatggtgtgtaattaaggaaaagtgttagcaaatacactgt 21882773  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 46413787 - 46413747
Alignment:
Q  1 aatgatgtgtaattaaagaaatgtgttagcaaatacactgt 41  Q
    |||||||||||||||| |||| |||||| ||||||||||||    
T  46413787 aatgatgtgtaattaaggaaaggtgttaacaaatacactgt 46413747  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 10061656 - 10061696
Alignment:
Q  1 aatgatgtgtaattaaagaaatgtgttagcaaatacactgt 41  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  10061656 aatgatgtgtaattaaggaaatgtgttagcaaataaactgt 10061696  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 23906650 - 23906591
Alignment:
Q  1 aatgatgtgtaattaaagaaatgtgttagcaaatacactgtttttgatacattttgtcact 61  Q
    |||| |||||||||||||||| ||||||||||||||| || | |||||||| |||||||||    
T  23906650 aatggtgtgtaattaaagaaaggtgttagcaaatacattg-tcttgatacagtttgtcact 23906591  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 43537189 - 43537149
Alignment:
Q  1 aatgatgtgtaattaaagaaatgtgttagcaaatacactgt 41  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  43537189 aatggtgtgtaattaaagaaatgtgttaacaaatacactgt 43537149  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 26470008 - 26470051
Alignment:
Q  1 aatgatgtgtaattaaagaaatgtgttagcaaatacactgtttt 44  Q
    |||| ||||||||||| |||| ||||||||||||||||||||||    
T  26470008 aatggtgtgtaattaaggaaaggtgttagcaaatacactgtttt 26470051  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 33077751 - 33077784
Alignment:
Q  1 aatgatgtgtaattaaagaaatgtgttagcaaat 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  33077751 aatgatgtgtaattaaataaatgtgttagcaaat 33077784  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 21540138 - 21540178
Alignment:
Q  1 aatgatgtgtaattaaagaaatgtgttagcaaatacactgt 41  Q
    ||||| ||||||||||||||| |||||| ||||||||||||    
T  21540138 aatgaagtgtaattaaagaaaggtgttaacaaatacactgt 21540178  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 29657428 - 29657468
Alignment:
Q  1 aatgatgtgtaattaaagaaatgtgttagcaaatacactgt 41  Q
    |||||| ||||||||| |||| |||||||||||||||||||    
T  29657428 aatgatatgtaattaaggaaaggtgttagcaaatacactgt 29657468  T

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Target: scaffold0122 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 18706 - 18741
Alignment:
Q  9 gtaattaaagaaatgtgttagcaaatacactgtttt 44  Q
    |||||||| |||||||||||||||||||||||||||    
T  18706 gtaattaaggaaatgtgttagcaaatacactgtttt 18741  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3167960 - 3167994
Alignment:
Q  1 aatgatgtgtaattaaagaaatgtgttagcaaata 35  Q
    ||||||||||||||||||||| |||||||||||||    
T  3167960 aatgatgtgtaattaaagaaaggtgttagcaaata 3167994  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 14131220 - 14131258
Alignment:
Q  1 aatgatgtgtaattaaagaaatgtgttagcaaatacact 39  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  14131220 aatggtgtgtaattaaggaaatgtgttagcaaatacact 14131258  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 38320244 - 38320204
Alignment:
Q  1 aatgatgtgtaattaaagaaatgtgttagcaaatacactgt 41  Q
    |||||||||||| ||| ||||||||||| ||||||||||||    
T  38320244 aatgatgtgtaaataaggaaatgtgttatcaaatacactgt 38320204  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7547329 - 7547366
Alignment:
Q  1 aatgatgtgtaattaaagaaatgtgttagcaaatacac 38  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  7547329 aatgatttgtaattaaggaaatgtgttagcaaatacac 7547366  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3040304 - 3040264
Alignment:
Q  1 aatgatgtgtaattaaagaaatgtgttagcaaatacactgt 41  Q
    |||| ||||||||||| |||| |||||||||||||||||||    
T  3040304 aatggtgtgtaattaaggaaaggtgttagcaaatacactgt 3040264  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 1632872 - 1632912
Alignment:
Q  1 aatgatgtgtaattaaagaaatgtgttagcaaatacactgt 41  Q
    |||| |||||||||||||||| |||||| ||||||||||||    
T  1632872 aatggtgtgtaattaaagaaacgtgttaacaaatacactgt 1632912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 34905910 - 34905950
Alignment:
Q  1 aatgatgtgtaattaaagaaatgtgttagcaaatacactgt 41  Q
    |||||||| ||||||| |||| |||||||||||||||||||    
T  34905910 aatgatgtataattaaggaaaggtgttagcaaatacactgt 34905950  T

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