View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_low_55 (Length: 272)
Name: NF13955_low_55
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 24 - 259
Target Start/End: Complemental strand, 6394590 - 6394355
Alignment:
| Q |
24 |
aggccatggccggatgatggatttttgacaaccatttcagtcaatttgtgaaataatgccgatgcccaacatggcagcgtcataagtcgcaactctgcag |
123 |
Q |
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| T |
6394590 |
aggccatggccggatggtggatttttgacaaccattttagtcaatttgtgaaataatgccgatgcccaacatggcagcgtcataagtcgcaactctgcag |
6394491 |
T |
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| Q |
124 |
tcaaacttactttgtattttaatccaacttgaaagttaatatgaagtaaataaggcatatggcatatgaattgattaatgatatgtgtttgaagtatgat |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6394490 |
tcaaacttactttgtattttaatccaacttgaaagttaatatgaagtaaataaggcatatggcatatgaattgattaatgatatgtgtttgaagtatgat |
6394391 |
T |
|
| Q |
224 |
aactcaagtatgtttaacttgataatatgtgtacct |
259 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6394390 |
aactcaagtatgtttaacttgataatatgtgtacct |
6394355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 223
Target Start/End: Complemental strand, 14820311 - 14820140
Alignment:
| Q |
52 |
caaccatttcagtcaatttgtgaaataatgccgatgcccaacatggcagcgtcataagtcgcaactctgcagtcaaacttactttgtattttaatccaac |
151 |
Q |
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| T |
14820311 |
caaccattgtagtcaatttgtaaaggaatgctgatgcctaatatggcggcgccaaaagtcgcaactcagtggtcaaacttaatttatattttgattcaac |
14820212 |
T |
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| Q |
152 |
ttgaaagttaatatgaagtaaataaggcatatggcatatgaattgattaatgatatgtgtttgaagtatgat |
223 |
Q |
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| T |
14820211 |
ttgaaagctaatatatagtaaataatgtgtatagcttatgaattgattaatgatatgtgtttgaagtatgat |
14820140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 6426109 - 6426035
Alignment:
| Q |
150 |
acttgaaagttaatatgaagtaaataaggcatatggcatatgaattgattaatgatatgtgtttgaagtatgata |
224 |
Q |
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| T |
6426109 |
acttgaaagctaatatgaacaaaataaggcatatagcttatgaattgactaatgatatgtgtttgaagtgtgata |
6426035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 14820127 - 14820083
Alignment:
| Q |
212 |
ttgaagtatgataactcaagtatgtttaacttgataatatgtgta |
256 |
Q |
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| T |
14820127 |
ttgaagtatgaaaactctagaatgtttaacttgatattatgtgta |
14820083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 259
Target Start/End: Complemental strand, 49218967 - 49218728
Alignment:
| Q |
26 |
gccatggccggatgatggatttttgacaaccatttcagtcaatttgtgaaat-aatgccgatgcccaacatggcagcgtcataagtcgcaactctgcagt |
124 |
Q |
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||||||| |||||| |||| ||| ||||||||| |||||||||| ||| |||||||||||||| |||||||||| ||| ||||||| || || || |
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| T |
49218967 |
gccatggtaggatgacggatgtttaacaaccattgcagtcaatttatgattggaatgccgatgcccaccatggcagcgctatatgtcgcaattcagctgt |
49218868 |
T |
|
| Q |
125 |
caaacttactttgtattttaatccaacttgaaagttaata-----tgaagtaaataaggcatatggcatatgaattgattaatgatatgtgtttgaagta |
219 |
Q |
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||| | || |||| ||||| || ||||||||||| | ||| ||||||||||||||||||| || |||||||||||||||||||||| |||| ||| |
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| T |
49218867 |
caagcataatttgaatttttattcaacttgaaagctgatatgaagtgaagtaaataaggcatatagcttatgaattgattaatgatatgtatttggggta |
49218768 |
T |
|
| Q |
220 |
tgataactcaagtatgtttaacttgataatatgtgtacct |
259 |
Q |
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|||||||||| || |||||||||||||||||||| |||| |
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| T |
49218767 |
tgataactcatataagtttaacttgataatatgtgcacct |
49218728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 15092659 - 15092704
Alignment:
| Q |
138 |
tattttaatccaacttgaaagttaatatgaagtaaataaggcatat |
183 |
Q |
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|||||| || ||||||||||| |||||| ||||||||||||||||| |
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| T |
15092659 |
tattttgattcaacttgaaagctaatataaagtaaataaggcatat |
15092704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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