View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13955_low_56 (Length: 271)

Name: NF13955_low_56
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13955_low_56
NF13955_low_56
[»] chr1 (1 HSPs)
chr1 (12-249)||(42844361-42844598)
[»] chr7 (2 HSPs)
chr7 (59-249)||(9123779-9123969)
chr7 (12-46)||(9123722-9123756)
[»] chr8 (4 HSPs)
chr8 (59-249)||(2600587-2600777)
chr8 (124-223)||(40050171-40050270)
chr8 (209-249)||(40050046-40050086)
chr8 (12-46)||(2600538-2600572)
[»] chr4 (2 HSPs)
chr4 (59-249)||(5929667-5929857)
chr4 (1-46)||(5929882-5929929)
[»] chr3 (1 HSPs)
chr3 (124-171)||(28886852-28886899)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 42844598 - 42844361
Alignment:
Q  12 tattatatccttttgacactattccaccactattgnnnnnnnnnnnnctccatgtcctcattcacccaccatcacctgcaagtttgcaacatcaaattca 111  Q
    |||||||||||||| ||||||||||||||||||||            ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42844598 tattatatcctttttacactattccaccactattgtctctctctctcctccatgtcctcattcacccaccatcacctgcaaggttgcaacatcaaattca 42844499  T
Q  112 ccatagcaccgccctcacaaccttaccccctttattgcatccataaatctattattcaacaattttcactttgatgaagaacctctataaatcttacaac 211  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42844498 ccatagcaccgcccttacaaccttaccccctttattgcatccataaatctattattcaacaattttcactttgatgaagaacctctataaatcttacaac 42844399  T
Q  212 aaaacaccaaaaatcaattaaattgtttccattaaaaa 249  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42844398 aaaacaccaaaaatcaattaaattgtttccattaaaaa 42844361  T

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Target: chr7 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 59 - 249
Target Start/End: Original strand, 9123779 - 9123969
Alignment:
Q  59 ctccatgtcctcattcacccaccatcacctgcaagtttgcaacatcaaattcaccatagcaccgccctcacaaccttaccccctttattgcatccataaa 158  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9123779 ctccatgtcctcattcacccaccatcacctgcaaggttgcaacatcaaattcaccatagcaccgccctcacaaccttactccctttattgcatccataaa 9123878  T
Q  159 tctattattcaacaattttcactttgatgaagaacctctataaatcttacaacaaaacaccaaaaatcaattaaattgtttccattaaaaa 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9123879 tctattattcaacaattttcactttgatgaagaacctctataaatcttacaacaaaacaccaaaaatcaattaaattgtttccattaaaaa 9123969  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 9123722 - 9123756
Alignment:
Q  12 tattatatccttttgacactattccaccactattg 46  Q
    |||||||||||||| ||||||||||||||||||||    
T  9123722 tattatatcctttttacactattccaccactattg 9123756  T

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Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 59 - 249
Target Start/End: Original strand, 2600587 - 2600777
Alignment:
Q  59 ctccatgtcctcattcacccaccatcacctgcaagtttgcaacatcaaattcaccatagcaccgccctcacaaccttaccccctttattgcatccataaa 158  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2600587 ctccatgtcctcattcacccaccatcacctgcaaggctgcaacatcaaattcaccatagcaccgccctcacaaccttaccccctttattgcatccataaa 2600686  T
Q  159 tctattattcaacaattttcactttgatgaagaacctctataaatcttacaacaaaacaccaaaaatcaattaaattgtttccattaaaaa 249  Q
    |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2600687 ttcattattcaacaattttcactttgatgaagaacctctataaatcttacaacaaaacaccaaaaatcaattaaattgtttccattaaaaa 2600777  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 40050270 - 40050171
Alignment:
Q  124 cctcacaaccttaccccctttattgcatccataaatctattattcaacaattttcactttgatgaagaacctctataaatcttacaacaaaacaccaaaa 223  Q
    ||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| ||||    
T  40050270 cctcagaaccttacctcttttattgcatccataaatctattattcaacaattttcactttgttgaagaacttcaataaatcttacaacaaaacactaaaa 40050171  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 40050086 - 40050046
Alignment:
Q  209 aacaaaacaccaaaaatcaattaaattgtttccattaaaaa 249  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  40050086 aacaaaacaccaaaaatcaattaaattgtctccattaaaaa 40050046  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 2600538 - 2600572
Alignment:
Q  12 tattatatccttttgacactattccaccactattg 46  Q
    |||||||||||||| ||||||||||||||||||||    
T  2600538 tattatatcctttttacactattccaccactattg 2600572  T

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Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 59 - 249
Target Start/End: Complemental strand, 5929857 - 5929667
Alignment:
Q  59 ctccatgtcctcattcacccaccatcacctgcaagtttgcaacatcaaattcaccatagcaccgccctcacaaccttaccccctttattgcatccataaa 158  Q
    |||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5929857 ctccatgtccccattcacccaccatcatctgcaaggttgcaacatcaaattcaccatagcaccgccctcacaaccttaccccctttattgcatccataaa 5929758  T
Q  159 tctattattcaacaattttcactttgatgaagaacctctataaatcttacaacaaaacaccaaaaatcaattaaattgtttccattaaaaa 249  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5929757 tctattattcaacaattttcactttgacgaagaacctctataaatcttacaacaaaacaccaaaaatcaaataaattgtttccattaaaaa 5929667  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 5929929 - 5929882
Alignment:
Q  1 tctttccataatat--tatatccttttgacactattccaccactattg 46  Q
    ||||||||||||||  ||||||||||| ||||||||||||||||||||    
T  5929929 tctttccataatatattatatcctttttacactattccaccactattg 5929882  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 28886899 - 28886852
Alignment:
Q  124 cctcacaaccttaccccctttattgcatccataaatctattattcaac 171  Q
    ||||||||| ||| |||| ||||||||||||||||||||| |||||||    
T  28886899 cctcacaactttatcccccttattgcatccataaatctatcattcaac 28886852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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