View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_low_57 (Length: 266)
Name: NF13955_low_57
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_low_57 |
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| [»] scaffold0076 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 21200759 - 21200544
Alignment:
| Q |
17 |
tcatttagtaagacttgatgttcaatttcatcttagacattttgta--aaataacaattatttgatgcaatgaagacata--aaactgctaaaaacatga |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||| ||||||||| |||| ||| |||||| | |
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| T |
21200759 |
tcatttagtaagacttgatgttcaatttcatcttagacattttgttctaaataacaattactttatgcaacgaagacatatcaaacagcttgaaacatta |
21200660 |
T |
|
| Q |
113 |
gcagggatgaagaacaaaacacataaaattgtttggttttgatagtcccacatagaaaattctgaaacaacctagaagacaattacctataaaataccct |
212 |
Q |
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| || ||||||||||| ||| |||||| |||||| | |||||||||||||| |||||||||||||||||| |||||| |||||||||||||| |||| |
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| T |
21200659 |
gaagagatgaagaacaggaca--taaaatagtttggatatgatagtcccacatcgaaaattctgaaacaaccaagaagaaaattacctataaaa-accca |
21200563 |
T |
|
| Q |
213 |
tatacacatgttgacaaag |
231 |
Q |
| |
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| || |||||||||||||| |
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| T |
21200562 |
tgtatacatgttgacaaag |
21200544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 182
Target Start/End: Original strand, 21241840 - 21242000
Alignment:
| Q |
26 |
aagacttgatgttcaatttcatctt-agacattttgta--aaataacaattatttgatgcaatgaagac--ataaaactgctaaaaacatgagcagggat |
120 |
Q |
| |
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||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||| |
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| T |
21241840 |
aagacttgatgttcaatttcatctttaaacattttgttctaaataacaattatttgatgcaatgaagacatataaaactgctagaaacatgagca-ggat |
21241938 |
T |
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| Q |
121 |
gaagaacaaaacacataaaattgtttggttttgatagtcccacatagaaaattctgaaacaa |
182 |
Q |
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||| ||||||||| ||| ||| | || ||| ||||||||| |||| |||||||| |||||| |
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| T |
21241939 |
gaaaaacaaaacatatataatagcttagttctgatagtcctacatcaaaaattctcaaacaa |
21242000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 21144597 - 21144536
Alignment:
| Q |
109 |
atgagcagggatgaagaacaaaacacataaaattgtttggttttgatagtcccacatagaaa |
170 |
Q |
| |
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|||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||| |
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| T |
21144597 |
atgagcagggatgaagaaaaagacacataaaattgtttggttttgatagtcccacgtagaaa |
21144536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 163
Target Start/End: Complemental strand, 21286868 - 21286727
Alignment:
| Q |
26 |
aagacttgatgttcaatttcatctt-agacattttgta--aaataacaattatttgatgcaatgaagac--ataaaactgctaaaaacatgagcagggat |
120 |
Q |
| |
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|||||||||||||| |||||||||| | ||||||| | |||| ||||||||| |||||||||||||| |||||||||||| ||||||||||| |||| |
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| T |
21286868 |
aagacttgatgttctatttcatctttaaacattttattctaaattacaattattcgatgcaatgaagacatataaaactgctagaaacatgagca-ggat |
21286770 |
T |
|
| Q |
121 |
gaagaacaaaacacataaaattgtttggttttgatagtcccac |
163 |
Q |
| |
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|| ||||| ||| ||||||| | || ||| |||||||||||| |
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| T |
21286769 |
taaaaacaagacatataaaataggttagttctgatagtcccac |
21286727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 21245935 - 21245998
Alignment:
| Q |
15 |
tctcatttagtaagacttgatgttcaatttcatcttagacattttgt--aaaataacaattatt |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||| |
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|
| T |
21245935 |
tctcatttagtaagacttgatgttcaatttcatctcatacattttgttataaataacaattatt |
21245998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 33709894 - 33709815
Alignment:
| Q |
104 |
aaaacatgagcagggatgaagaacaaaacacataaaattgtttggttttgatagtcccacatagaaaattctgaaacaacc |
184 |
Q |
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|
|||||| ||||||| | ||||||||||||| ||||||| |||| ||||| |||||||||||| |||| | |||||| |||| |
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|
| T |
33709894 |
aaaacaagagcagg-aggaagaacaaaacatataaaatagttttgttttaatagtcccacatcgaaagtgctgaaataacc |
33709815 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 21140194 - 21140123
Alignment:
| Q |
20 |
tttagtaagacttgatgttcaatttcatcttagacattttgt--aaaataacaattatttgatgcaatgaag |
89 |
Q |
| |
|
|||| |||||||| || ||||||||||||| ||||||||||| |||||||||||||| |||||| |||| |
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| T |
21140194 |
tttactaagacttaatattcaatttcatctcagacattttgttctaaataacaattattctatgcaacgaag |
21140123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 21156999 - 21156911
Alignment:
| Q |
126 |
acaaaacacataaaattgtttggttttgatagtcccacatagaaaattctgaaacaacctagaag-acaattacctataaaataccctt |
213 |
Q |
| |
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|||| ||| ||| ||| ||||||||| |||||||||||| ||| ||||| |||||||| ||| | | |||||||||||||||| |||| |
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| T |
21156999 |
acaagacatatagaatagtttggtttaaatagtcccacatcgaagattctaaaacaaccaagaggaagaattacctataaaatatcctt |
21156911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 21178868 - 21178793
Alignment:
| Q |
17 |
tcatttagtaagacttgatgttcaatttcatcttagacattttgt--aaaataacaattatttgatgcaatgaaga |
90 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||| | |||||| |||||||||||||| |||||| ||||| |
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| T |
21178868 |
tcatttactaagacttgacgttcaatttcatcttacagtttttgttctaaataacaattattctatgcaacgaaga |
21178793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 21268236 - 21268188
Alignment:
| Q |
117 |
ggatgaagaacaaaacacataaaattgtttggttttgatagtcccacat |
165 |
Q |
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|
||||||| ||||| ||||||||||| |||||||||| | |||||||||| |
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| T |
21268236 |
ggatgaaaaacaagacacataaaatagtttggttttaaaagtcccacat |
21268188 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 209
Target Start/End: Complemental strand, 17572 - 17454
Alignment:
| Q |
92 |
ataaaactgctaaaaacatgagcagggatgaagaacaaaacacataaaattgtttggttttgatagtcccacatagaaaattctgaaacaacctagaag- |
190 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||||||| ||| || |||| | |||||| | |||||||||||| ||| ||||| ||| |||| ||| | |
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|
| T |
17572 |
ataaaacagctggaaacattagcagggatgaagaacaagacatatgaaatagcttggttataatagtcccacatcgaagattcttaaagaaccgagagga |
17473 |
T |
|
| Q |
191 |
acaattacctataaaatac |
209 |
Q |
| |
|
| | ||||||||||||||| |
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|
| T |
17472 |
agatttacctataaaatac |
17454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 37587 - 37687
Alignment:
| Q |
17 |
tcatttagtaagacttgatgttcaatttcatcttagacattttgt--aaaataacaattatttgatgcaatgaagac--ataaaactgctaaaaacatga |
112 |
Q |
| |
|
||||||| ||| ||| |||||||||||||||| |||| ||||||| |||||||||||||| |||||| |||||| ||| ||| |||| |||||||| |
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| T |
37587 |
tcatttactaaaactcgatgttcaatttcatcgtagaaattttgttctaaataacaattattctatgcaacgaagacttatagaacagctagaaacatga |
37686 |
T |
|
| Q |
113 |
g |
113 |
Q |
| |
|
| |
|
|
| T |
37687 |
g |
37687 |
T |
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