View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_low_6 (Length: 630)
Name: NF13955_low_6
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 557; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 16 - 625
Target Start/End: Original strand, 13551729 - 13552340
Alignment:
| Q |
16 |
cagaatctgcagtaatgggaattggagttacaatcactcaatcacttattgcagaagtgattggagcaaggaatggagaaatgttcatggtggggatgaa |
115 |
Q |
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| T |
13551729 |
cagaatctgcggtaatgggaattggagttacaatcactcaatcacttattgcagaagtgattgaagcaaggaatgcagaaatgttcatggtggggatgaa |
13551828 |
T |
|
| Q |
116 |
caaacaaagtgattgggtttcaagaatcatgtcaacacgatatgcacgagagggaggcactgattacttgtcaataagtatcttatcaatcttccagcct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13551829 |
caaacaaagtgattgggtttcaagaatcatgtcaacactatatgcacgagagggaggcactgattacttgtcaataagtatcttatcaatcttccagcct |
13551928 |
T |
|
| Q |
216 |
aaattttcaactacttgttaacctctatcaaagaaggaatgaaggaaagaagaatgttacttatgcatggtttctttcaaaaatctttcaccaaggaaag |
315 |
Q |
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| T |
13551929 |
aaattttcaactacttgttaacctctatcaaagaaggaatgaaggaaagaagaatgttacttatgcatggtttctttcaaaaatctttcaccaaggaaag |
13552028 |
T |
|
| Q |
316 |
ctggttcagaagctacaacatgttgtatcgagtgactctagggaatataggcatcatccagaaaggatatgtaattacaactgatcaagagctagagata |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13552029 |
ctggttcagaagctacaacatgttgtatcgagtgactctagggaatataggcatcatccagaaaggatatgtaattacaactgatcaagacctagagata |
13552128 |
T |
|
| Q |
416 |
acctatgctcagactgcatacttggatgatttcccctattttaaaagaagaccctccaaaagtcttggctgagttcgtctcccaacatttcaaggagact |
515 |
Q |
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| T |
13552129 |
acctatgctcagactgcatacttggatgatttcccctatttcaaaagaagaccctccagaagtgttggctgagttcgtctcccaacatttcaaggagact |
13552228 |
T |
|
| Q |
516 |
ggagttgta--attcaatggatatgacccctatttcataatgaatctgcaatctagcaagctgatatggcaaggactcaagctgatatctctactatata |
613 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13552229 |
ggagttgtaatattcaatggatatgacccctatttcataatgaatctgcaatctagcaagctgatatggcaaggactcaagctgatatctctattatagg |
13552328 |
T |
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| Q |
614 |
taaagaaaacta |
625 |
Q |
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|||||||||||| |
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| T |
13552329 |
taaagaaaacta |
13552340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 598 - 630
Target Start/End: Original strand, 24062042 - 24062074
Alignment:
| Q |
598 |
atatctctactatatataaagaaaactatccct |
630 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
24062042 |
atatctatactatatataaagaaaactatccct |
24062074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 552 - 601
Target Start/End: Original strand, 12597074 - 12597123
Alignment:
| Q |
552 |
aatgaatctgcaatctagcaagctgatatggcaaggactcaagctgatat |
601 |
Q |
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| T |
12597074 |
aatgaatctgcaatccagcaaactaatatggcaaggacccaagctgatat |
12597123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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