View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_low_60 (Length: 251)
Name: NF13955_low_60
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 7024472 - 7024233
Alignment:
| Q |
1 |
acggttttacattgtttgctctatgtaattctttttgtacaaagtagattgtagttgtatgactgtgtcgtgttttgatgttggtaaataatttcctg-- |
98 |
Q |
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| T |
7024472 |
acggttttacattgtttgttctatgtaattctttttgtacaaagtagattgtagttgtatgattgtgttgtgttttgatgttggtaaataatttcctgat |
7024373 |
T |
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| Q |
99 |
-aatataatgacagttggacattgcactaaatcattttttcgcattcaattgacaacaatctcaagaaagacaagagttaagataact-aaacctgtaga |
196 |
Q |
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| T |
7024372 |
aaatataatgacagttggacattgcactaaatcattttttcgcattcaattgacaacaatctcaagaaacacaagagttaagataactaaaacctgtaga |
7024273 |
T |
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| Q |
197 |
ttgatataacatatagcccacgattttgtaaccaaatagt |
236 |
Q |
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| T |
7024272 |
ttgatataacatgtagcccacgattttgtaaccaaatagt |
7024233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 14286009 - 14286105
Alignment:
| Q |
142 |
ttcaattgacaacaatctcaagaa--agacaagagttaagataactaaacctgtagattgatataacatatagcccacgattttgtaaccaaatagt |
236 |
Q |
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| T |
14286009 |
ttcaattgacaacaatctcaagaagaaaaaaagagttaagataattaaacccctagattgatatggcatatagcccacagttctgcaaccaaatagt |
14286105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 5357517 - 5357451
Alignment:
| Q |
170 |
aagagttaagataactaaacctgtagattgatataacatatagcccacgattttgtaaccaaatagt |
236 |
Q |
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| T |
5357517 |
aagagttaagtcaactaaacttgtagattgatataacatgtaaccgaatattttgtaaccaaatagt |
5357451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 50437878 - 50437836
Alignment:
| Q |
144 |
caattgacaacaatctcaagaaagacaagagttaagataacta |
186 |
Q |
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| T |
50437878 |
caattgacaacaatcttaagaaacacaacagttaagataacta |
50437836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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