View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13955_low_69 (Length: 231)
Name: NF13955_low_69
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_low_69 |
 | |
|
| [»] chr2 (7 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 39813157 - 39812927
Alignment:
| Q |
1 |
ttcaagttcactcataaattttctaattacatttatagctgagaattcatctttcacaatcgatctttagtttctatttttcactctatcgtaaatttta |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
39813157 |
ttcaagttcactcataaattttcaaattacatttatagctgagaatacatctttcacaagcgatcttaagtttctatttttcactttatcgtaaatttta |
39813058 |
T |
|
| Q |
101 |
aatatctacccatgttactcctaagttatttagtcatgcaaatcgtacattggaaaatctaaatggattaatgatatgatacctgtatggacaaatacga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39813057 |
aatatctacccatgttactcctaagttatttagtcatgcaaatcgtacattggaaaatctaaatggattaatgatatgatacctgtatggacaaatacga |
39812958 |
T |
|
| Q |
201 |
tgagagtagaatcaagatattgaggaacaaa |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
39812957 |
tgagagtagaatcaagatattgaggaacaaa |
39812927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 39824666 - 39824440
Alignment:
| Q |
1 |
ttcaagttcactcataaattttctaattacatttatagctgagaattcatctttcacaatcgatctttagtttctatttttcactctatcgtaaatttta |
100 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||||| ||| ||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
39824666 |
ttcaagttaactcataaattttcaaaatacatttatatctgggaattcatctttcacaagtgatcttaagtttctatttttcactttatcgtaaatttta |
39824567 |
T |
|
| Q |
101 |
aatatctacccatgttactcctaagttatttagtcatgcaaatcgtacattggaaaatctaaatggattaatgatatgatacctgtatggacaaatacga |
200 |
Q |
| |
|
|||||||| ||||||||||| || |||| |||||||| |||||||||||||||| ||| |||||| ||||||||||||||||| ||||||||| || |
|
|
| T |
39824566 |
aatatctagccatgttactc----gtaattttgtcatgcagatcgtacattggaaaacctatatggatcgatgatatgatacctgtaaggacaaatatga |
39824471 |
T |
|
| Q |
201 |
tgagagtagaatcaagatattgaggaacaaa |
231 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |
|
|
| T |
39824470 |
tgagagtggaatcaagatattgaggaacaaa |
39824440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 151
Target Start/End: Complemental strand, 39804627 - 39804480
Alignment:
| Q |
3 |
caagttcactcataaattttctaattacatttatagctgagaatt-catctttcacaatcgatctttagtttctatttttcactctatcgtaaattttaa |
101 |
Q |
| |
|
|||||| |||||||||||||| || |||||||||||||| ||||| |||||||||||| |||||| ||||||||||||||||| ||| |||||||||| |
|
|
| T |
39804627 |
caagttaactcataaattttcaaaatacatttatagctgggaattacatctttcacaagggatcttaagtttctatttttcact--atcttaaattttaa |
39804530 |
T |
|
| Q |
102 |
atatctacccatgttactcctaagttatttagtcatgcaaatcgtacatt |
151 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
39804529 |
gtatctagccatgttactcctaagttttttagtcatgcaaattgtacatt |
39804480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 39920450 - 39920372
Alignment:
| Q |
153 |
gaaaatctaaatggattaatgatatgatacctgtatggacaaatacgatgagagtagaatcaagatattgaggaacaaa |
231 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39920450 |
gaaaatctaaatggatcaatgatatgatacctgtaaggacaaatatgatgagagtagaatcaagatattgaggaacaaa |
39920372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 39908947 - 39908870
Alignment:
| Q |
154 |
aaaatctaaatggattaatgatatgatacctgtatggacaaatacgatgagagtagaatcaagatattgaggaacaaa |
231 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39908947 |
aaaatccaaatggattaatgatatgatacctgtaaggacaaatatgatgagagtagaatcaagatattgaggaacaaa |
39908870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 39804320 - 39804256
Alignment:
| Q |
167 |
attaatgatatgatacctgtatggacaaatacgatgagagtagaatcaagatattgaggaacaaa |
231 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39804320 |
attaatgatatgatacctgtaaggacaaatatgatgagagtagaatcaagatattgaggaacaaa |
39804256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 39881613 - 39881535
Alignment:
| Q |
153 |
gaaaatctaaatggattaatgatatgatacctgtatggacaaatacgatgagagtagaatcaagatattgaggaacaaa |
231 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||| ||||||||| ||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
39881613 |
gaaaatctaaatgagttattgatatgatacctgtaaggacaaatatgattagagtggaatccagatattgaggaacaaa |
39881535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University