View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13955_low_72 (Length: 206)

Name: NF13955_low_72
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13955_low_72
NF13955_low_72
[»] scaffold0023 (3 HSPs)
scaffold0023 (1-199)||(153829-154028)
scaffold0023 (1-172)||(169759-169929)
scaffold0023 (1-145)||(36328-36472)
[»] chr8 (25 HSPs)
chr8 (1-199)||(13720750-13720949)
chr8 (1-199)||(13662087-13662286)
chr8 (1-199)||(22006080-22006279)
chr8 (7-199)||(16195472-16195665)
chr8 (1-190)||(16872882-16873072)
chr8 (87-194)||(17345902-17346009)
chr8 (1-147)||(16674265-16674409)
chr8 (1-145)||(6774133-6774275)
chr8 (1-145)||(24549216-24549358)
chr8 (1-145)||(30120957-30121102)
chr8 (1-172)||(271210-271381)
chr8 (1-172)||(644539-644710)
chr8 (1-172)||(830274-830445)
chr8 (1-172)||(15319009-15319180)
chr8 (1-172)||(15499378-15499549)
chr8 (1-172)||(22088644-22088815)
chr8 (1-65)||(21844525-21844589)
chr8 (1-65)||(21851918-21851982)
chr8 (87-159)||(7000465-7000537)
chr8 (74-154)||(22907078-22907158)
chr8 (87-159)||(41506654-41506726)
chr8 (74-172)||(24385582-24385682)
chr8 (74-150)||(5238406-5238482)
chr8 (74-150)||(24661116-24661192)
chr8 (74-150)||(43685865-43685941)
[»] chr3 (32 HSPs)
chr3 (1-199)||(18911228-18911427)
chr3 (1-194)||(18896871-18897065)
chr3 (1-199)||(15468162-15468361)
chr3 (1-194)||(25058974-25059168)
chr3 (1-199)||(5228548-5228746)
chr3 (74-199)||(23492698-23492823)
chr3 (1-194)||(16821374-16821564)
chr3 (74-199)||(14842392-14842517)
chr3 (1-176)||(22275444-22275619)
chr3 (1-190)||(54651692-54651883)
chr3 (1-147)||(41270310-41270455)
chr3 (1-147)||(55316454-55316599)
chr3 (1-172)||(12264641-12264813)
chr3 (1-177)||(15615068-15615242)
chr3 (74-154)||(8268600-8268680)
chr3 (74-154)||(8275700-8275780)
chr3 (1-172)||(49232671-49232842)
chr3 (1-172)||(1467589-1467760)
chr3 (1-65)||(12902047-12902111)
chr3 (1-172)||(12812076-12812247)
chr3 (3-65)||(15936592-15936654)
chr3 (3-65)||(15938434-15938496)
chr3 (74-190)||(53771367-53771484)
chr3 (87-159)||(11986025-11986097)
chr3 (74-190)||(16261779-16261896)
chr3 (74-172)||(17912328-17912428)
chr3 (74-147)||(38168239-38168312)
chr3 (74-150)||(2449106-2449182)
chr3 (74-158)||(12030019-12030103)
chr3 (74-154)||(13954754-13954834)
chr3 (1-49)||(44229220-44229268)
chr3 (74-154)||(45861124-45861204)
[»] scaffold1500 (1 HSPs)
scaffold1500 (1-199)||(1336-1535)
[»] chr5 (34 HSPs)
chr5 (1-199)||(23514796-23514995)
chr5 (1-187)||(35790932-35791119)
chr5 (1-190)||(1219351-1219541)
chr5 (1-199)||(11211886-11212086)
chr5 (1-190)||(7425559-7425747)
chr5 (1-176)||(17471434-17471609)
chr5 (1-190)||(23328792-23328982)
chr5 (1-190)||(24616396-24616586)
chr5 (1-190)||(24712772-24712962)
chr5 (1-190)||(24745790-24745980)
chr5 (1-190)||(27010076-27010262)
chr5 (1-145)||(19500134-19500278)
chr5 (1-145)||(25426863-25427008)
chr5 (1-145)||(18777865-18778009)
chr5 (1-145)||(22366354-22366498)
chr5 (1-145)||(4199858-4200002)
chr5 (1-172)||(10777820-10777991)
chr5 (1-145)||(21073468-21073612)
chr5 (1-96)||(12609-12704)
chr5 (74-172)||(16105969-16106066)
chr5 (1-172)||(29188133-29188301)
chr5 (1-145)||(43443270-43443412)
chr5 (1-172)||(21932231-21932402)
chr5 (1-172)||(21938401-21938572)
chr5 (1-172)||(35582271-35582442)
chr5 (2-172)||(36989620-36989790)
chr5 (1-145)||(22882960-22883105)
chr5 (87-159)||(2032148-2032220)
chr5 (87-159)||(23981350-23981422)
chr5 (74-172)||(11343010-11343107)
chr5 (129-177)||(32951069-32951118)
chr5 (74-150)||(20623288-20623364)
chr5 (74-150)||(21233396-21233472)
chr5 (74-150)||(37053063-37053139)
[»] scaffold0529 (1 HSPs)
scaffold0529 (1-199)||(3197-3395)
[»] chr7 (34 HSPs)
chr7 (1-194)||(15759941-15760135)
chr7 (1-199)||(15950614-15950812)
chr7 (1-199)||(14250721-14250919)
chr7 (1-190)||(18979854-18980042)
chr7 (1-190)||(13758605-13758795)
chr7 (1-190)||(15927803-15927991)
chr7 (1-190)||(13572911-13573097)
chr7 (1-172)||(2437692-2437862)
chr7 (1-172)||(10989644-10989814)
chr7 (1-145)||(13910897-13911041)
chr7 (1-172)||(7822963-7823134)
chr7 (1-172)||(7830274-7830445)
chr7 (1-172)||(27176668-27176839)
chr7 (1-145)||(16478837-16478979)
chr7 (1-172)||(27101487-27101658)
chr7 (1-172)||(27108835-27109006)
chr7 (1-172)||(38783579-38783750)
chr7 (1-65)||(48622623-48622687)
chr7 (3-65)||(18253800-18253862)
chr7 (74-184)||(25292173-25292282)
chr7 (74-172)||(15516691-15516791)
chr7 (21-105)||(15862174-15862259)
chr7 (1-66)||(16418732-16418797)
chr7 (1-66)||(10000326-10000391)
chr7 (74-154)||(7293335-7293415)
chr7 (74-158)||(16212073-16212157)
chr7 (87-158)||(13036884-13036955)
chr7 (87-177)||(13321349-13321440)
chr7 (74-184)||(14113823-14113933)
chr7 (87-184)||(14423474-14423571)
chr7 (74-190)||(42056101-42056218)
chr7 (74-150)||(11516546-11516622)
chr7 (74-150)||(15441432-15441508)
chr7 (74-150)||(30261997-30262073)
[»] chr6 (26 HSPs)
chr6 (1-194)||(1556240-1556434)
chr6 (1-199)||(19610253-19610452)
chr6 (87-199)||(1657566-1657678)
chr6 (1-190)||(16232127-16232315)
chr6 (87-199)||(15862804-15862916)
chr6 (1-190)||(23978004-23978194)
chr6 (1-147)||(18086697-18086844)
chr6 (1-190)||(29869609-29869797)
chr6 (1-145)||(27653856-27654000)
chr6 (1-92)||(16825678-16825769)
chr6 (1-150)||(1649975-1650122)
chr6 (1-145)||(25175798-25175944)
chr6 (120-200)||(4991445-4991524)
chr6 (1-172)||(22225588-22225759)
chr6 (1-172)||(22251416-22251587)
chr6 (132-199)||(16240401-16240468)
chr6 (1-172)||(16376223-16376394)
chr6 (1-172)||(16383547-16383718)
chr6 (1-172)||(10488934-10489105)
chr6 (3-172)||(16555989-16556158)
chr6 (3-172)||(16632545-16632714)
chr6 (1-145)||(19299472-19299617)
chr6 (1-65)||(13620751-13620815)
chr6 (87-159)||(27751757-27751829)
chr6 (74-190)||(23995249-23995366)
chr6 (102-177)||(29666211-29666287)
[»] chr4 (21 HSPs)
chr4 (1-199)||(7131887-7132086)
chr4 (1-199)||(17145479-17145678)
chr4 (1-190)||(47357889-47358075)
chr4 (1-199)||(18169205-18169402)
chr4 (74-199)||(14996447-14996572)
chr4 (1-190)||(20000958-20001148)
chr4 (1-190)||(15287078-15287266)
chr4 (1-154)||(26339254-26339408)
chr4 (1-147)||(15294228-15294375)
chr4 (1-190)||(22351897-22352085)
chr4 (74-190)||(14952087-14952201)
chr4 (1-116)||(18248453-18248569)
chr4 (1-65)||(19020721-19020785)
chr4 (1-66)||(10644454-10644519)
chr4 (1-65)||(8378386-8378450)
chr4 (74-190)||(15272124-15272241)
chr4 (1-65)||(22738504-22738568)
chr4 (74-154)||(26680519-26680599)
chr4 (74-187)||(15135823-15135937)
chr4 (74-159)||(13246739-13246824)
chr4 (74-150)||(16608967-16609043)
[»] chr2 (23 HSPs)
chr2 (1-199)||(16935828-16936027)
chr2 (1-199)||(17006488-17006687)
chr2 (1-199)||(42177791-42177990)
chr2 (1-190)||(34824710-34824900)
chr2 (1-190)||(12641473-12641663)
chr2 (1-190)||(12728627-12728817)
chr2 (1-190)||(3798434-3798624)
chr2 (1-154)||(8944081-8944235)
chr2 (1-190)||(12635699-12635889)
chr2 (1-190)||(23774371-23774561)
chr2 (1-96)||(19886583-19886678)
chr2 (120-199)||(25213421-25213499)
chr2 (1-172)||(11231188-11231359)
chr2 (1-172)||(22513035-22513206)
chr2 (1-65)||(23778002-23778066)
chr2 (1-172)||(24685631-24685802)
chr2 (1-172)||(28775657-28775828)
chr2 (1-66)||(5888586-5888651)
chr2 (1-49)||(21142130-21142178)
chr2 (74-150)||(14906308-14906384)
chr2 (74-158)||(22863237-22863321)
chr2 (74-150)||(23820390-23820466)
chr2 (87-182)||(25265224-25265320)
[»] scaffold0369 (1 HSPs)
scaffold0369 (1-192)||(3957-4149)
[»] scaffold0092 (1 HSPs)
scaffold0092 (1-199)||(10570-10769)
[»] scaffold0761 (1 HSPs)
scaffold0761 (5-184)||(1412-1592)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-199)||(33980-34179)
[»] scaffold0191 (1 HSPs)
scaffold0191 (1-199)||(7279-7477)
[»] chr1 (16 HSPs)
chr1 (1-193)||(22228043-22228236)
chr1 (1-193)||(22232740-22232933)
chr1 (1-190)||(46523624-46523813)
chr1 (1-190)||(7640765-7640955)
chr1 (1-190)||(22035682-22035872)
chr1 (1-172)||(18059608-18059779)
chr1 (1-150)||(45051657-45051804)
chr1 (1-147)||(5072260-5072405)
chr1 (4-150)||(2116492-2116636)
chr1 (74-176)||(15861254-15861356)
chr1 (1-172)||(17148802-17148974)
chr1 (1-172)||(17004873-17005044)
chr1 (1-145)||(19962375-19962520)
chr1 (1-65)||(18601071-18601135)
chr1 (82-147)||(18598849-18598913)
chr1 (4-172)||(38054941-38055109)
[»] scaffold0383 (1 HSPs)
scaffold0383 (1-176)||(2627-2803)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-199)||(5034-5233)
[»] scaffold0139 (2 HSPs)
scaffold0139 (1-199)||(20937-21133)
scaffold0139 (1-199)||(13883-14078)
[»] scaffold0116 (1 HSPs)
scaffold0116 (1-190)||(270-456)
[»] scaffold0175 (1 HSPs)
scaffold0175 (74-199)||(787-912)
[»] scaffold0026 (2 HSPs)
scaffold0026 (1-147)||(64395-64540)
scaffold0026 (3-65)||(107983-108045)
[»] scaffold0183 (1 HSPs)
scaffold0183 (1-147)||(6832-6979)
[»] scaffold0032 (1 HSPs)
scaffold0032 (74-199)||(107980-108105)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-145)||(31548-31692)
[»] scaffold1711 (1 HSPs)
scaffold1711 (1-147)||(1176-1321)
[»] scaffold0467 (1 HSPs)
scaffold0467 (1-194)||(10166-10360)
[»] scaffold0413 (1 HSPs)
scaffold0413 (74-182)||(5912-6020)
[»] scaffold0155 (1 HSPs)
scaffold0155 (2-190)||(23582-23769)
[»] scaffold0013 (1 HSPs)
scaffold0013 (82-190)||(154264-154370)
[»] scaffold0420 (1 HSPs)
scaffold0420 (1-96)||(13249-13342)
[»] scaffold0107 (2 HSPs)
scaffold0107 (1-172)||(31544-31715)
scaffold0107 (1-53)||(39881-39933)
[»] scaffold0076 (2 HSPs)
scaffold0076 (1-172)||(39338-39509)
scaffold0076 (1-66)||(43232-43298)
[»] scaffold0364 (1 HSPs)
scaffold0364 (146-199)||(17697-17750)
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-65)||(54109-54173)
[»] scaffold0215 (2 HSPs)
scaffold0215 (4-109)||(9260-9363)
scaffold0215 (4-109)||(16158-16261)
[»] scaffold0892 (1 HSPs)
scaffold0892 (1-65)||(3648-3712)
[»] scaffold0772 (1 HSPs)
scaffold0772 (74-170)||(5848-5943)
[»] scaffold0213 (1 HSPs)
scaffold0213 (1-96)||(29397-29493)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-66)||(7444-7509)
[»] scaffold0162 (2 HSPs)
scaffold0162 (87-159)||(12078-12150)
scaffold0162 (74-158)||(26286-26370)
[»] scaffold0028 (1 HSPs)
scaffold0028 (74-172)||(130882-130979)
[»] scaffold0367 (1 HSPs)
scaffold0367 (87-172)||(17142-17226)
[»] scaffold0251 (1 HSPs)
scaffold0251 (74-190)||(13198-13315)
[»] scaffold0516 (1 HSPs)
scaffold0516 (1-49)||(12100-12148)
[»] scaffold0078 (1 HSPs)
scaffold0078 (74-154)||(36930-37010)
[»] scaffold0158 (1 HSPs)
scaffold0158 (87-149)||(25546-25608)
[»] scaffold0597 (1 HSPs)
scaffold0597 (74-147)||(835-908)
[»] scaffold0465 (1 HSPs)
scaffold0465 (74-147)||(9839-9912)
[»] scaffold0058 (1 HSPs)
scaffold0058 (74-190)||(57305-57422)
[»] scaffold0025 (1 HSPs)
scaffold0025 (74-172)||(146908-147008)
[»] scaffold0141 (2 HSPs)
scaffold0141 (74-150)||(22859-22935)
scaffold0141 (74-150)||(27114-27190)
[»] scaffold0124 (1 HSPs)
scaffold0124 (74-150)||(1450-1526)


Alignment Details
Target: scaffold0023 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 154028 - 153829
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  154028 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 153929  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  153928 ccttagaagaagattaactcaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattctcttcaaaacccttgttcttctc 153829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 169929 - 169759
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||| | ||| ||||||| ||||||||||||||| | |    
T  169929 aagagcacgaatttagcatgaattgttcatcaacccattttcatacaacatgagaaaatgcaaaattatacatgattatgataatcactaacccccttac 169830  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
     || || || ||||| | | ||| |||||||||||||||||| || | | |||||| |||||||||||||||    
T  169829 ttttgaagatgattatcactaacccttgcttcaattcagctcttatg-tcaccccacttgattcctcaagct 169759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 36328 - 36472
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||||||||||||||||| |||||||||||| ||||| ||||||||| || ||||||||| ||||| ||||||| |||||| |||||||| | |    
T  36328 aagagcacgaatttagcatgaattgttcatcaacccagtttcatacaacatgagaatatgcaaaattacacatgattatgataatcattaacccccttac 36427  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctccta 145  Q
    ||| || |  ||||| ||| ||| |||||||||||||||||||||    
T  36428 ctttgaagttgattatccctaacccttgcttcaattcagctccta 36472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 6e-64; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 13720949 - 13720750
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  13720949 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 13720850  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  13720849 ccttagaagaagattaacccaaactcttgcttcaattcagctcctaatcttaccccaattgattcctcaagctattctcttcaaaacccttgttcttctc 13720750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 13662286 - 13662087
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| || ||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  13662286 aagagcacgaatttagcaacaattgtttatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 13662187  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  13662186 ccttagaagaagattaacccaaactcttgcttcaattcagctcctaatcttaccccaattgattcctcaagctattctcttcaaaacccttgttcttctc 13662087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 22006279 - 22006080
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  22006279 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 22006180  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    |||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||    
T  22006179 cctttgaagaagattaactcaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattctcttcaaaacctttgttcttctc 22006080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 16195472 - 16195665
Alignment:
Q  7 acgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtcccttag 105  Q
    ||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| | |||||||| | ||||||    
T  16195472 acgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataattaacccccttaccttag 16195571  T
Q  106 atgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    | || |||||||||||||||||||||||||||| ||||||| ||||||||| |||||| ||||||||||||| |||||||||||||||| ||||    
T  16195572 aagatgattaacccaaactcttgcttcaattcaactcctaatcttaccccatttgatttctcaagctattctcttcaaaacccttgttcttctc 16195665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 16873072 - 16872882
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    |||||||||||||||||   |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  16873072 aagagcacgaatttagccacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 16872973  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||| |||||||||| |||||||||||||||||| ||||||||||||||||| | | ||||| ||||| | |||| | ||||||||||    
T  16872972 ccttagaagaagattaactcaaactcttgcttcaatttagctcctaagcttacccaattggattcttcaagttcttctctccaaaaccctt 16872882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 17345902 - 17346009
Alignment:
Q  87 actaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaac 186  Q
    |||||||||| | ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||    
T  17345902 actaacccccttacctaagaagaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagttattctctccaaaac 17346001  T
Q  187 ccttgttc 194  Q
    ||||||||    
T  17346002 ccttgttc 17346009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 16674409 - 16674265
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||||||||||||||||| |||| ||||||||||||| |||||||||  ||||||||||    ||| |||| || |||| |||||||||| | |    
T  16674409 aagagcacgaatttagcatgaattgttcaacaacccattttcatacaacatgagcaaatgcaaaaatt-acatgattgtgataataactaacccccttac 16674311  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaag 147  Q
    |||||| |||||||||| ||| |||||||||||||||||||| ||||    
T  16674310 cttagaagaagattaactcaa-ctcttgcttcaattcagctcataag 16674265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 6774275 - 6774133
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||||| ||||||||||| |||||||||||||||||| | ||||||| ||||||||||||   ||| ||||||| ||||||||||||||| | |    
T  6774275 aagagcacgaatctagcatgaattgttcatcaacccattttcatataacatgagaaaatgcaaaat--tacatgattatgataatcactaacccccttac 6774178  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctccta 145  Q
    ||| || |  ||||| | | ||| |||||||||||||||||||||    
T  6774177 ctttgaagttgattatctctaacccttgcttcaattcagctccta 6774133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 24549216 - 24549358
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||||| ||||||||||| |||||||||||||||||| ||||||||| ||||||||||||   ||| ||||||| ||||||||||||||| | |    
T  24549216 aagagcacgaatctagcatgaattgttcatcaacccattttcatacaacatgagaaaatgcaaaat--tacatgattatgataatcactaacccccttac 24549313  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctccta 145  Q
    |||||| |  ||||| ||  ||| || |||||| |||||||||||    
T  24549314 cttagaagttgattatccttaaccctagcttcacttcagctccta 24549358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 30120957 - 30121102
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgc-aaaatcacacacgattatgttaatcactaacccccgtc 99  Q
    |||||||||||||||||||||||| ||||||||| |||||||| ||||||||| |  || | ||||| ||||| ||||||| ||||||||||||||| |     
T  30120957 aagagcacgaatttagcatgaattgttcatcaactcattttcatacaacatgagattatacaaaaattacacatgattatgataatcactaaccccctta 30121056  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctccta 145  Q
    |||| || || ||||| | | ||| ||| |||||||||||||||||    
T  30121057 cctttgaagatgattatctctaacccttacttcaattcagctccta 30121102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 271381 - 271210
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  271381 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 271282  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  271281 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 271210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 644539 - 644710
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  644539 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 644638  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  644639 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 644710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 830274 - 830445
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  830274 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 830373  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  830374 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 830445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 15319180 - 15319009
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  15319180 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 15319081  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  15319080 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 15319009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 15499549 - 15499378
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  15499549 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 15499450  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  15499449 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 15499378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 22088815 - 22088644
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| |||| |||||||| ||||||||| |||||||||| ||   ||| ||||||| | || |||||||||| |     
T  22088815 aagagcacgaatttaacaacaattgttcaccaacacattttcatacaacatgagaaaatgcaaagattgtacatgattatgatgataactaaccccctta 22088716  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  22088715 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 22088644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 21844589 - 21844525
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa 65  Q
    ||||||||||||||  |||||||| |||||||||||| ||||| |||||||||  ||||||||||    
T  21844589 aagagcacgaatttgacatgaattgttcatcaacccaatttcatacaacatgagcaaatgcaaaa 21844525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 21851982 - 21851918
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa 65  Q
    ||||||||||||||  |||||||| |||||||||||| ||||| |||||||||  ||||||||||    
T  21851982 aagagcacgaatttgacatgaattgttcatcaacccaatttcatacaacatgagcaaatgcaaaa 21851918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 7000537 - 7000465
Alignment:
Q  87 actaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaatt 159  Q
    |||||||||| | | |||||| | ||||||||||||||   ||||||||| |||||||||||| |||||||||    
T  7000537 actaacccccttactttagataaggattaacccaaacttaggcttcaatttagctcctaagctcaccccaatt 7000465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 22907158 - 22907078
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccc 154  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||||||||||||||||    
T  22907158 gattatgataaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagctcctaagcttaccc 22907078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 41506726 - 41506654
Alignment:
Q  87 actaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaatt 159  Q
    |||||||||| | |||||||| | ||||||||||||||   ||||||||| ||||| |||||| |||||||||    
T  41506726 actaacccccttaccttagataaggattaacccaaacttaggcttcaatttagctcttaagctcaccccaatt 41506654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 24385682 - 24385582
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaa--ttgattcctcaagc 171  Q
    ||||||| |||  |||||||||| | ||||||||||||||||| || ||||   |||||| || |||||||||||| || ||||  ||||||| ||||||    
T  24385682 gattatgataaagactaacccccttaccttagatgaagattaatcccaacttaggcttcactttagctcctaagctcactccaatcttgattcttcaagc 24385583  T
Q  172 t 172  Q
    |    
T  24385582 t 24385582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 5238406 - 5238482
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagctt 150  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||||||||||||    
T  5238406 gattatgataaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagctcctaagctt 5238482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 24661192 - 24661116
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagctt 150  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||||||||||||    
T  24661192 gattatgataaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagctcctaagctt 24661116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 43685865 - 43685941
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagctt 150  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||||||||||||    
T  43685865 gattatgataaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagctcctaagctt 43685941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 18911228 - 18911427
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  18911228 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 18911327  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  18911328 ccttagaagaagattaacccaaactcttgcttcaattcagctcctaatcttaccccaattgattcctcaagctattctcttcaaaacccttgttcttctc 18911427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 18897065 - 18896871
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||||||||||||||||| ||||||||| ||||| ||||| |   ||| ||||||| |||| |||||||||| |     
T  18897065 aagagcacgaatttatcaacaattgttcatcaacccattttcatacaacatgagaaaatacaaaacttgtacatgattatgataataactaaccccctta 18896966  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttc 194  Q
    |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18896965 ccttggaagaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattctcttcaaaacccttgttc 18896871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 15468361 - 15468162
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcac-acacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| ||| |||||||||||||| ||||||||| ||||||||||||    ||| ||||||| |||| |||||||||| |     
T  15468361 aagagcacgaatttagcaacaattgttcctcaacccattttcatacaacatgagaaaatgcaaaatttgtacatgattatgataataactaaccccctta 15468262  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    |||| || |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  15468261 cctttgaagaagattaaccctaattcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattctcttcaaaacccttgttcttctc 15468162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 25058974 - 25059168
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |    || ||||||| |||| |||||||||| |     
T  25058974 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtgcatgattatgataataactaaccccctta 25059073  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttc 194  Q
    |||| || |||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25059074 cctttgaagaagattaaccctaatttttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattctcttcaaaacccttgttc 25059168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 5228548 - 5228746
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  ||| || |||||||||||||||| |  |||||| ||||||||||| |   ||| ||||||| | || |||||||||| |     
T  5228548 aagagcacgaatttagcaacaatgtt-catcaacccattttcataacacatgagaaaatgcaaaaattgaacatgattatgatgataactaaccccctta 5228646  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||    
T  5228647 ccttagaagaagattaacccaaactcttgtttcaattcagctcctaagcttaccccaattgattcctcaagctattctcttcaaaacctttgttcttctc 5228746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 74 - 199
Target Start/End: Original strand, 23492698 - 23492823
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagcta 173  Q
    ||||||| |||  |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23492698 gattatgataaagactaacccccttaccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttacccaaattgattcctcaagcta 23492797  T
Q  174 ttcttttcaaaacccttgttcatctc 199  Q
    |||| |||||||||||||||| ||||    
T  23492798 ttctcttcaaaacccttgttcttctc 23492823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 16821374 - 16821564
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    ||||||||| ||||  ||| |||| |||||||||||||||||| |||||||||  ||||||||||| |||   |||| || |||| |||||||||| | |    
T  16821374 aagagcacggatttgacataaattgttcatcaacccattttcatacaacatgagcaaatgcaaaattacat--gattgtgataataactaacccccttac 16821471  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttc 194  Q
    ||| || |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||  ||||||||||||||||    
T  16821472 ctttgaagaagattaacacaaactcttgcttcaattcagctcct-agcttaccccaattgattcttcaagttattcccttcaaaacccttgttc 16821564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 74 - 199
Target Start/End: Complemental strand, 14842517 - 14842392
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagcta 173  Q
    ||||||| |||  |||||||||| | ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14842517 gattatgataaagactaacccccttaccttagaagaagattaaccctaactcttgcttcaattcagctcctaagcttaccccaattgatccctcaagcta 14842418  T
Q  174 ttcttttcaaaacccttgttcatctc 199  Q
    |||| |||||||||||||||| ||||    
T  14842417 ttctcttcaaaacccttgttcttctc 14842392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 22275444 - 22275619
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcac-acacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||||    ||| ||||||| |||| |||||||||| |     
T  22275444 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaatttgtacatgattatgataataactaaccccctta 22275543  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattc 176  Q
    |||| || || ||||||||  |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22275544 cctttgaagatgattaaccttaacttttgcttcaattcagctcct-agcttaccccaattgattcctcaagctattc 22275619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 54651692 - 54651883
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||| ||||||| |   ||| ||||||| | |  || ||||||| |     
T  54651692 aagagcacgaatttagcaacaattattcatcaacccattttcatacaacatgagaaattgcaaaaattgaacatgattatgatgaagacaaaccccctta 54651791  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaa-ttgattcctcaagctattcttttcaaaaccctt 190  Q
    |||||||||| |||||||||||||| ||||||||||| |||||||||||| ||||||| ||||||| ||||||| |||| | ||||||||||    
T  54651792 ccttagatgatgattaacccaaacttttgcttcaattaagctcctaagctcaccccaatttgattcatcaagctcttctctccaaaaccctt 54651883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 41270310 - 41270455
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||  | ||||||||    ||| |||| || |||| |||||||||| | |    
T  41270310 aagagcacgaatttagcatgaattgttcatcaacccattttcatacaacatgagtagatgcaaaa-attacatgattgtgataataactaacccccttac 41270408  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaag 147  Q
    ||| || |||||||||||| ||  |||||||||||||||||||||||    
T  41270409 ctttgaagaagattaaccctaatccttgcttcaattcagctcctaag 41270455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 55316454 - 55316599
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||  ||||||||||    ||| |||| || |||| |||||||||  | |    
T  55316454 aagagcacgaatttagcatgaattgttcatcaacccattttcatacaacatgagcaaatgcaaaaatt-acatgattgtgataataactaacccctttac 55316552  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaag 147  Q
    ||| || |||||||||||| ||  |||||||||||||||||||||||    
T  55316553 ctttgaagaagattaaccctaatccttgcttcaattcagctcctaag 55316599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 12264813 - 12264641
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgc-aaaatcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||| |||||   ||| ||||||| |||| |||||||||| |     
T  12264813 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 12264714  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttacccc-aattgattcctcaagct 172  Q
    |||| || || |||||| || |||  ||||||||||||||||||| || | ||||| |||||||||||||||||    
T  12264713 cctttgaagatgattaatcccaacctttgcttcaattcagctcct-aggtcaccccaaattgattcctcaagct 12264641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 15615068 - 15615242
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||| ||| ||||||||||| |||||||||||||||||| ||||||||| ||||||||||||   ||| ||||||| |||  |||||||||| | |    
T  15615068 aagagcacaaatctagcatgaattgttcatcaacccattttcatacaacatgagaaaatgcaaaat--tacatgattatgataaagactaacccccttac 15615165  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattct 177  Q
    |||| ||||||||||  ||||||    ||||||||| ||||||||||||| ||| | | ||||| ||||| ||||||    
T  15615166 cttaaatgaagattagaccaaacctaggcttcaatttagctcctaagctttcccaattggattcttcaagttattct 15615242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 8268680 - 8268600
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccc 154  Q
    ||||||| |||| |||||||||| | ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  8268680 gattatgataataactaacccccttaccttagaagaagattaacccaaactcttgcttcaatttagctcctaagcttaccc 8268600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 8275780 - 8275700
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccc 154  Q
    ||||||| |||| |||||||||| | ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  8275780 gattatgataataactaacccccttaccttagaagaagattaacccaaactcttgcttcaatttagctcctaagcttaccc 8275700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 49232671 - 49232842
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  49232671 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 49232770  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||| | || | |||| |||||||||| ||||||    
T  49232771 cctttgaagttgattatctctaacccttgcttcaattcagctcat-aggtcacccaaattgattccccaagct 49232842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 1467760 - 1467589
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  1467760 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 1467661  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  1467660 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 1467589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 12902111 - 12902047
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa 65  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| |||||||||||    
T  12902111 aagagcacgaatttagcaaaaattattcatcaacccattttcatacaacatgagaaaatgcaaaa 12902047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 12812076 - 12812247
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| | |||||||||||||||| |||| |||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  12812076 aagagcacgaatttaacaacaattgtccatcaacccattttcatacaatatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 12812175  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    ||||  | |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  12812176 cctttaaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 12812247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 15936654 - 15936592
Alignment:
Q  3 gagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa 65  Q
    |||||||||||||| |  |||| |||||||||||||||||| ||||||||| |||||||||||    
T  15936654 gagcacgaatttagtaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaa 15936592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 15938496 - 15938434
Alignment:
Q  3 gagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa 65  Q
    ||||||| |||||| |  |||| |||||||||||||||||| ||||||||| |||||||||||    
T  15938496 gagcacgtatttagtaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaa 15938434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 190
Target Start/End: Original strand, 53771367 - 53771484
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttacccca-attgattcctcaagct 172  Q
    ||||||| |||  |||||||||| | |||||||| |||||||| || ||||   |||||| || |||||||||||| |||| |  |||||||||||||||    
T  53771367 gattatgataaagactaacccccttaccttagataaagattaatcccaacttaggcttcactttagctcctaagctcacccaatcttgattcctcaagct 53771466  T
Q  173 attcttttcaaaaccctt 190  Q
     |||| | ||||||||||    
T  53771467 cttctctccaaaaccctt 53771484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 11986097 - 11986025
Alignment:
Q  87 actaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaatt 159  Q
    |||||||||| | |||||||| | |||||| |||||||   ||||||||| |||||||||||| |||||||||    
T  11986097 actaacccccttaccttagataatgattaatccaaacttaggcttcaatttagctcctaagctcaccccaatt 11986025  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 190
Target Start/End: Original strand, 16261779 - 16261896
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaa-ttgattcctcaagct 172  Q
    ||||||| |||  |||||||||| | |||||||| ||||||||  | ||||   |||||| || |||||||||||| |||| |  |||||||||||||||    
T  16261779 gattatgataaagactaacccccttaccttagataaagattaattccaacttaggcttcactttagctcctaagctcacccaatcttgattcctcaagct 16261878  T
Q  173 attcttttcaaaaccctt 190  Q
     |||| | ||||||||||    
T  16261879 cttctctccaaaaccctt 16261896  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 17912428 - 17912328
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaa--ttgattcctcaagc 171  Q
    ||||||| |||  |||||||||| | |||||||| |||||||| || | |||  ||||||||| |||||||||||| || ||||  ||||||| ||||||    
T  17912428 gattatgataaagactaacccccttaccttagataaagattaatcccacctcaggcttcaatttagctcctaagctcactccaaccttgattcttcaagc 17912329  T
Q  172 t 172  Q
    |    
T  17912328 t 17912328  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 38168239 - 38168312
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaag 147  Q
    ||||||| |||  |||||||||| | ||||||||||||||||| || ||||   ||||||||| ||||||||||    
T  38168239 gattatgataaagactaacccccttaccttagatgaagattaatcccaacttaggcttcaatttagctcctaag 38168312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 2449182 - 2449106
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagctt 150  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||||||||||||    
T  2449182 gattatgataaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagctcctaagctt 2449106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 158
Target Start/End: Complemental strand, 12030103 - 12030019
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaat 158  Q
    ||||||| |||| | |||||||| | |||||||| |||||||| || ||||   ||||||||| |||||||||||| || |||||    
T  12030103 gattatgataatgattaacccccttaccttagataaagattaatcccaacttaggcttcaatttagctcctaagctcactccaat 12030019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 13954834 - 13954754
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccc 154  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||||||||||| ||||    
T  13954834 gattatggtaaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagctcctaagctcaccc 13954754  T

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Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 44229220 - 44229268
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaac 49  Q
    ||||||||| ||||| ||| |||| |||||||||||||||||| |||||    
T  44229220 aagagcacggatttaacatcaattgttcatcaacccattttcatacaac 44229268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 45861124 - 45861204
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccc 154  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||||||||||| ||||    
T  45861124 gattatggtaaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagctcctaagctcaccc 45861204  T

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Target: scaffold1500 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: scaffold1500
Description:

Target: scaffold1500; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 1535 - 1336
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  1535 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 1436  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  1435 ccttagaagaagattaacctaaactcttgcttcaattcagctcctaatcttaccccaattgattcctcaagctattctcttcaaaacccttgttcttctc 1336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 1e-61; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 23514796 - 23514995
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| | || |||||||||| |     
T  23514796 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgaacatgattatgatgataactaaccccctta 23514895  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||    
T  23514896 ccttagaagaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagttattctcttcaaaacccttgttcttctc 23514995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 35791119 - 35790932
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  35791119 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 35791020  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacc 187  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||    
T  35791019 ccttagaagaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctcttctctccaaaacc 35790932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 1219541 - 1219351
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| ||||||||||||||| |     
T  1219541 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataatcactaaccccctta 1219442  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||| ||||| | |||| | ||||||||||    
T  1219441 ccttagaagaagattaacccaaactcttgcttcaatttagctcctaagcttacccaattggattcttcaagttcttctctccaaaaccctt 1219351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 11212086 - 11211886
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgc-aaaatcacacacgattatgttaatcactaacccccgtc 99  Q
    |||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||| |||||   ||| ||||||| |||| |||||||||| |     
T  11212086 aagagcacgaatttagcaagaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgaacatgattatgataataactaaccccctta 11211987  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaa--ttgattcctcaagctattcttttcaaaacccttgttcatc 197  Q
    |||| || || ||||||||| |||||||||||||||||||||||| ||||||||||||  ||||||| |||||||||||  |||||||||||||||| ||    
T  11211986 cctttgaagatgattaaccctaactcttgcttcaattcagctcct-agcttaccccaattttgattcttcaagctattcccttcaaaacccttgttcttc 11211888  T
Q  198 tc 199  Q
    ||    
T  11211887 tc 11211886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 7425559 - 7425747
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  7425559 aagagcacgaatttagcaataattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 7425658  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||  |  |||| ||||||||| ||||| |||||| ||||||||||    
T  7425659 ccttagaagaagattaacccaaactcttgcttcaattcagctcctaag--tcacccacttgattcctaaagctcttctttccaaaaccctt 7425747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 17471609 - 17471434
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcac-acacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||||||||||||||||| ||||||||| ||||| ||||||    ||| ||||||| |||| |||||||||| |     
T  17471609 aagagcacgaatttatcaacaattgttcatcaacccattttcatacaacatgagaaaatacaaaatttgtacatgattatgataataactaaccccctta 17471510  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattc 176  Q
    |||| || || ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17471509 cctttgaagatgattaactcaaactcttgcttcaattcagctcct-agcttaccccaattgattcctcaagctattc 17471434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 23328792 - 23328982
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacac-gattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||  |||||||| |||||||||||||||||| |||||||||||| ||| |||||   | |  ||||||| |||| |||||||||| |     
T  23328792 aagagcacgaatttgacatgaattgttcatcaacccattttcatacaacatgaaaagatgtaaaatttgaaattgattatgataataactaaccccctta 23328891  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||| ||||| | |||| | ||||||||||    
T  23328892 ccttagaagaagattaacccaaactcttgcttcaatttagctcctaagcttacccaattggattcttcaagttcttctctccaaaaccctt 23328982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 24616396 - 24616586
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacac-gattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||  |||||||| |||||||||||||||||| |||||||||||| ||| |||||   | |  ||||||| |||| |||||||||| |     
T  24616396 aagagcacgaatttgacatgaattgttcatcaacccattttcatacaacatgaaaagatgtaaaatttgaaattgattatgataataactaaccccctta 24616495  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||| ||||| | |||| | ||||||||||    
T  24616496 ccttagaagaagattaacccaaactcttgcttcaatttagctcctaagcttacccaattggattcttcaagttcttctctccaaaaccctt 24616586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 24712772 - 24712962
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacac-gattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||  |||||||| |||||||||||||||||| |||||||||||| ||| |||||   | |  ||||||| |||| |||||||||| |     
T  24712772 aagagcacgaatttgacatgaattgttcatcaacccattttcatacaacatgaaaagatgtaaaatttgaaattgattatgataataactaaccccctta 24712871  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||| ||||| | |||| | ||||||||||    
T  24712872 ccttagaagaagattaacccaaactcttgcttcaatttagctcctaagcttacccaattggattcttcaagttcttctctccaaaaccctt 24712962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 24745790 - 24745980
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacac-gattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||  |||||||| |||||||||||||||||| |||||||||||| ||| |||||   | |  ||||||| |||| |||||||||| |     
T  24745790 aagagcacgaatttgacatgaattgttcatcaacccattttcatacaacatgaaaagatgtaaaatttgaaattgattatgataataactaaccccctta 24745889  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||| ||||| | |||| | ||||||||||    
T  24745890 ccttagaagaagattaacccaaactcttgcttcaatttagctcctaagcttacccaattggattcttcaagttcttctctccaaaaccctt 24745980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 27010076 - 27010262
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    ||||||||||||||  |||||||| |||||||||||||||||| |||||||||  ||||||||||    ||| |||| || |||| |||||||||| | |    
T  27010076 aagagcacgaatttgacatgaattgttcatcaacccattttcatacaacatgagcaaatgcaaaaatt-acatgattgtgataataactaacccccttac 27010174  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||  |  |||| ||||||||| ||||| |||| | ||||||||||    
T  27010175 cttagaagaagattaacccaaactcttgcttcaattcagctcctaag--tcacccacttgattcctaaagctcttctctccaaaaccctt 27010262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 19500134 - 19500278
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||||||||||||||| | |||||||||||||||||| ||||||||| |||||||||||| ||||| ||||||| ||||||||||||||| | |    
T  19500134 aagagcacgaatttagcatgaagtgttcatcaacccattttcatacaacatgagaaaatgcaaaattacacatgattatgataatcactaacccccttac 19500233  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctccta 145  Q
    ||| || |  ||||| | | ||| |||||||||||||||||||||    
T  19500234 ctttgaagttgattatctctaacccttgcttcaattcagctccta 19500278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 25426863 - 25427008
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||| ||||| ||||||| ||||||||||||||| | |    
T  25426863 aagagcacgaatttagcatgaattgttcatcaacccattttcatacaacatgagaaaatgcaaaattacacatgattatgataatcactaacccccttac 25426962  T
Q  101 cttagatgaagattaac-ccaaactcttgcttcaattcagctccta 145  Q
    ||| || |  ||||| | | || | |||||||||||||||||||||    
T  25426963 ctttgaagttgattatctctaaccccttgcttcaattcagctccta 25427008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 18778009 - 18777865
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    ||||||||||||||| |||||||| |||||||||||||||||| ||||||||| |||||||||||| ||||| ||||||| ||||||||||||||| | |    
T  18778009 aagagcacgaatttaacatgaattgttcatcaacccattttcatacaacatgagaaaatgcaaaattacacatgattatgataatcactaacccccttac 18777910  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctccta 145  Q
    ||| || |   |||| | | ||| |||||||||||||||||||||    
T  18777909 ctttgaagttaattatctctaacccttgcttcaattcagctccta 18777865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 22366498 - 22366354
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||||||||| |||||||||||| ||||| ||||||| ||||||||||||||| | |    
T  22366498 aagagcacgaatttagcatgaattgctcatcaacccattttcatacaacatgagaaaatgcaaaattacacatgattatgataatcactaacccccttac 22366399  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctccta 145  Q
    ||| || |  ||||| | | ||| |||||||||||||| ||||||    
T  22366398 ctttgaagttgattatctctaacccttgcttcaattcaactccta 22366354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 4200002 - 4199858
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||| ||||||||| || ||||||||| ||||| ||||||| ||||| ||||||||| | |    
T  4200002 aagagcacgaatttagcatgaattattcatcaactcattttcatacaacatgagaatatgcaaaattacacatgattatgataatccctaacccccttac 4199903  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctccta 145  Q
    ||| || |  ||||| | | ||| |||||||||||||||||||||    
T  4199902 ctttgaagttgattatctctaacccttgcttcaattcagctccta 4199858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 10777991 - 10777820
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgc-aaaatcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||| |||||   ||| ||||||| ||||||||| ||||| |     
T  10777991 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataatcactacccccctta 10777892  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || || ||||| ||  ||| |||||||||||||||||||| || | |||||| |||||||||||||||    
T  10777891 cctttgaagatgattatccttaacccttgcttcaattcagctcct-aggtcaccccacttgattcctcaagct 10777820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 21073612 - 21073468
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||||||||||||||||| ||||| |||||||||||| ||||||||| |||||||||||| ||||| ||||||| |||| |||||||||| | |    
T  21073612 aagagcacgaatttagcatgaattgttcattaacccattttcatacaacatgagaaaatgcaaaattacacatgattatgataataactaacccccttac 21073513  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctccta 145  Q
    ||| || |  ||||| ||  ||  || ||||||||||||||||||    
T  21073512 ctttgaagttgattatccttaatcctagcttcaattcagctccta 21073468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 12609 - 12704
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaaccccc 96  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||| |||||| ||||| ||||||| |||| ||||||||||    
T  12609 aagagcacgaatttagcatgaattgttcatcaacccattttcatacaacatgagaaaatacaaaattacacatgattatgataataactaaccccc 12704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 16105969 - 16106066
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    ||||||| |||  |||||||||| | ||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16105969 gattatgataaagactaacccccttaccttagaagaagattaacctaaactcttgcttcaattcagctcct-agcttaccccaattgattcctcaagct 16106066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 29188301 - 29188133
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||||| ||||||||||| |||||| ||||||||||| ||||||||| ||||||||||||   ||| ||||||  ||||||||||||||| | |    
T  29188301 aagagcacgaatctagcatgaattgttcatcgacccattttcatacaacatgagaaaatgcaaaat--tacatgattataataatcactaacccccttac 29188204  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    ||| || |  ||||| | | ||| |||||||||||||||||||| || | |||||| ||||||||| |||||    
T  29188203 ctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcaccccacttgattcctaaagct 29188133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 43443412 - 43443270
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    ||||||||||||||| |||||||| |||||||| ||||||||| | ||||||| || ||||  ||| ||||| ||||||| ||||||||||||||| | |    
T  43443412 aagagcacgaatttaacatgaattgttcatcaatccattttcatataacatgagaatatgc--aattacacatgattatgataatcactaacccccttac 43443315  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctccta 145  Q
    ||| || |  ||||| | | ||| |||||||||||||||||||||    
T  43443314 ctttgaagttgattatctctaacccttgcttcaattcagctccta 43443270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 21932402 - 21932231
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  21932402 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 21932303  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||||||||||    
T  21932302 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattcctcaagct 21932231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 21938572 - 21938401
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  21938572 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 21938473  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||||||||||    
T  21938472 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattcctcaagct 21938401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 35582271 - 35582442
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  35582271 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 35582370  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  35582371 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 35582442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 172
Target Start/End: Complemental strand, 36989790 - 36989620
Alignment:
Q  2 agagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| ||| |||||| ||   ||| ||||||| |||| |||||||||| | |    
T  36989790 agagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaattgcaaagattgtacatgattatgataataactaacccccttac 36989691  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    ||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  36989690 ctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 36989620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 22883105 - 22882960
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    |||||||| |||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  22883105 aagagcacaaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 22883006  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctccta 145  Q
     ||| || |  ||||| ||| ||| |||||||||||||||||||||    
T  22883005 tctttgaagttgattatccctaacccttgcttcaattcagctccta 22882960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 2032148 - 2032220
Alignment:
Q  87 actaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaatt 159  Q
    |||||||||| | |||||||| | ||||||||||||||   ||||||||| |||||||||||| |||||||||    
T  2032148 actaacccccttaccttagataaggattaacccaaacttaggcttcaatttagctcctaagctcaccccaatt 2032220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 23981422 - 23981350
Alignment:
Q  87 actaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaatt 159  Q
    |||||||||| | ||| ||||||||||||| |||||||   ||||||||| |||||||||||| |||||||||    
T  23981422 actaacccccttacctaagatgaagattaatccaaacttaggcttcaatttagctcctaagctcaccccaatt 23981350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 11343010 - 11343107
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    ||||||| |||  |||||||||| | |||| || |||||||||||| |||   |||||||||||||||||| || | |||||| |||||||||||||||    
T  11343010 gattatgataaaaactaacccccttacctttgaagaagattaaccctaacctctgcttcaattcagctcct-aggtcaccccacttgattcctcaagct 11343107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 32951069 - 32951118
Alignment:
Q  129 cttcaattcagctcctaagcttaccccaa-ttgattcctcaagctattct 177  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||| ||||    
T  32951069 cttcaatttagctcctaagcttaccccaatttgattcttcaagctcttct 32951118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 20623288 - 20623364
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagctt 150  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||||||||||||    
T  20623288 gattatgataaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagctcctaagctt 20623364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 21233472 - 21233396
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagctt 150  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||||||||||||    
T  21233472 gattatgataaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagctcctaagctt 21233396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 37053063 - 37053139
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagctt 150  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||||||||||||    
T  37053063 gattatgataaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagctcctaagctt 37053139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0529 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: scaffold0529
Description:

Target: scaffold0529; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 3197 - 3395
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||||||   |||  |||||| |||| | |||||||| | |    
T  3197 aagagcacgaatttagcaagaattgttcatcaacccattttcatacaacatgagaaaatgcaaaattgtacataattatgataataattaacccccttac 3296  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||| ||||    
T  3297 cttagaagaagattaaccgaaactcttgcttcaattcagctcctaagcttaccccaattgattcttcaagctattcccttcaaaacccttgttcttctc 3395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 5e-61; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 15760135 - 15759941
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| | || |||||||||| |     
T  15760135 aagagcacgaatttagcaataattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgaacatgattatgatgataactaaccccctta 15760036  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttc 194  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15760035 ccttagaagaagattaacacaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattctcttcaaaacccttgttc 15759941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 15950812 - 15950614
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  15950812 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 15950713  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   |||||||||||||||| ||||    
T  15950712 cctttgaagaagattaacccaaactcttgcttcaattcagctcct-agcttaccccaattgattcctcaagctatttccttcaaaacccttgttcttctc 15950614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 14250919 - 14250721
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa--tcacacacgattatgttaatcactaacccccgt 98  Q
    ||||||||||||||| ||  |||| |||||||||||||||||| ||||||||| |||||||||||  | | ||| ||||| | | || |||||||||| |    
T  14250919 aagagcacgaatttaacaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaaatga-acatgattacgatgataactaaccccctt 14250821  T
Q  99 cccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatct 198  Q
     ||||||| |||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  14250820 accttagaagaagat-aactcaaactcttgcttcaattcagctcctaatcttaccccaattgattcctcaagctattctcttcaaaacccttgttcttct 14250722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 18980042 - 18979854
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  18980042 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 18979943  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||  |  |||| ||||||||| ||||| |||| | ||||||||||    
T  18979942 ccttagaagaagattaacccaaactcttgcttcaattcagctcctaag--tcacccacttgattcctaaagctcttctctccaaaaccctt 18979854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 13758605 - 13758795
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    |||||||||||||||||   |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  13758605 aagagcacgaatttagccacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 13758704  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||| ||||| | |||| | ||||||||||    
T  13758705 ccttagaagaagattaacccaaactcttgcttcaatttagctcctaagcttacccaattggattcttcaagttcttctctccaaaaccctt 13758795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 15927803 - 15927991
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  ||||  ||||||| ||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  15927803 aagagcacgaatttagcaacaattgatcatcaatccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 15927902  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||  |  |||| ||||||||| ||||| |||| | ||||||||||    
T  15927903 ccttagaagaagattaacccaaactcttgcttcaattcagctcctaag--tcacccacttgattcctaaagctcttctctccaaaaccctt 15927991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 13572911 - 13573097
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    ||||||||||||||  |||||||| |||||||||||||||||| |||||||||  ||||||||||    ||| |||| || |||| |||||||||| | |    
T  13572911 aagagcacgaatttgacatgaattgttcatcaacccattttcatacaacatgagcaaatgcaaaaatt-acatgattgtgataataactaacccccttac 13573009  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||  |  |||| ||||||||| ||||| |||| | ||||||||||    
T  13573010 cttagaagaagattaacccaaactcttgcttcaattcagctcctaag--tcacccacttgattcctaaagctcttctctccaaaaccctt 13573097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 2437692 - 2437862
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||||||||||| ||||| ||||| | |||||||||| ||||||||| ||||||||||||   ||| ||||||| |||| |||||||||| | |    
T  2437692 aagagcacgaatttagcaagaattgttcattatcccattttcatacaacatgagaaaatgcaaaattgtacatgattatgataataactaacccccttac 2437791  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    ||| || || |||||  || ||| |||||||||||||||||||| || | ||||||||||||||||||||||    
T  2437792 ctttgaagatgattattcctaacccttgcttcaattcagctcct-aggtcaccccaattgattcctcaagct 2437862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 10989644 - 10989814
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    ||||||||||||||||||||| || |||||||||||||||||| ||||||||| || ||||||||| | ||| ||||||| ||||||||||||||| | |    
T  10989644 aagagcacgaatttagcatgatttgttcatcaacccattttcatacaacatgagaatatgcaaaattatacatgattatgataatcactaacccccatac 10989743  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    ||| || |  ||||| ||| ||| |||||||||||| |||||||| | | ||| || |||||||||||||||    
T  10989744 ctttgaagttgattatccctaacccttgcttcaattaagctcctatg-tcacctcacttgattcctcaagct 10989814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 13911041 - 13910897
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||| ||||||||| || ||||||||| ||||| ||||||| |||||| |||||||| | |    
T  13911041 aagagcacgaatttagcatgaattgttcatcaactcattttcatacaacatgagaatatgcaaaattacacatgattatgataatcaataacccccttac 13910942  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctccta 145  Q
    ||| || |  ||||| | | ||| |||||||||||||||||||||    
T  13910941 ctttgaagttgattatctctaacccttgcttcaattcagctccta 13910897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 7822963 - 7823134
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  7822963 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 7823062  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||||||||||    
T  7823063 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattcctcaagct 7823134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 7830274 - 7830445
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  7830274 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 7830373  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||||||||||    
T  7830374 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattcctcaagct 7830445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 27176668 - 27176839
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  27176668 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 27176767  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||||||||||    
T  27176768 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattcctcaagct 27176839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 16478979 - 16478837
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||||| || |||||||| |||||||||||||||||| ||||||||| ||||||||||||   | | ||||||| ||||||||||||||| | |    
T  16478979 aagagcacgaatctaacatgaattgttcatcaacccattttcatacaacatgagaaaatgcaaaat--taaatgattatgataatcactaacccccttac 16478882  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctccta 145  Q
    ||| || |  ||||| ||  ||| || |||||| |||||||||||    
T  16478881 ctttgaagttgattatccttaaccctagcttcacttcagctccta 16478837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 27101658 - 27101487
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  27101658 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 27101559  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  27101558 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 27101487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 27109006 - 27108835
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  27109006 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 27108907  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  27108906 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 27108835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 38783750 - 38783579
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  38783750 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 38783651  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  38783650 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 38783579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 48622687 - 48622623
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa 65  Q
    ||||||||||||||||||| |||| |||||||||||||||||  | ||||||| |||||||||||    
T  48622687 aagagcacgaatttagcatcaattgttcatcaacccattttcgtaaaacatgagaaaatgcaaaa 48622623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 18253862 - 18253800
Alignment:
Q  3 gagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa 65  Q
    |||||||||||||| |  |||| |||||||||||||||||| ||||||||| |||||||||||    
T  18253862 gagcacgaatttagtaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaa 18253800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 184
Target Start/End: Complemental strand, 25292282 - 25292173
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagcta 173  Q
    ||||||| |||  |||||||||| |  |||||||||||||||  ||||||    ||||||||| |||||||||||||| |||||||||||||||||| |     
T  25292282 gattatgataaagactaacccccttatcttagatgaagattagaccaaacctaggcttcaatttagctcctaagctta-cccaattgattcctcaagttc 25292184  T
Q  174 ttcttttcaaa 184  Q
    |||| ||||||    
T  25292183 ttctcttcaaa 25292173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 15516791 - 15516691
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaa--ttgattcctcaagc 171  Q
    ||||||| |||  |||||||||| | | || || || ||||||||| |||||||||||||||||||||||||  ||||||||||  ||||||| ||||||    
T  15516791 gattatgataaagactaacccccttacatttgaagatgattaaccctaactcttgcttcaattcagctcctagacttaccccaatcttgattcttcaagc 15516692  T
Q  172 t 172  Q
    |    
T  15516691 t 15516691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 15862174 - 15862259
Alignment:
Q  21 aatttttcatcaacccattttcacacaacatgaaaaaatgc-aaaatcacacacgattatgttaatcactaacccccgtcccttag 105  Q
    |||| |||||||||||||||||| ||||||||| ||||||| ||||| | ||| ||||||| |||| |||||||||| | ||||||    
T  15862174 aattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattatacatgattatgataataactaacccccttaccttag 15862259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 16418732 - 16418797
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaat 66  Q
    ||||||||||||||  |||||||| |||||||||||||||||| ||||||||| || ||| |||||    
T  16418732 aagagcacgaatttgacatgaattgttcatcaacccattttcatacaacatgagaagatgtaaaat 16418797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 10000391 - 10000326
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaat 66  Q
    ||||||||||||||  ||| |||| |||||||||||||||| | ||||||||| || |||||||||    
T  10000391 aagagcacgaatttgacataaattgttcatcaacccatttttatacaacatgagaagatgcaaaat 10000326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 7293335 - 7293415
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccc 154  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||||||||||||||||    
T  7293335 gattatgataaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagctcctaagcttaccc 7293415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 16212073 - 16212157
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaat 158  Q
    ||||||| |||  |||||||||| | ||||||||||||||||| || ||||   ||||||||| |||||||||||| || |||||    
T  16212073 gattatgataaagactaacccccttaccttagatgaagattaatcccaacttaggcttcaatttagctcctaagctcactccaat 16212157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 158
Target Start/End: Complemental strand, 13036955 - 13036884
Alignment:
Q  87 actaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaat 158  Q
    |||||||||| | |||||||| |||||||| || ||||   ||||||||| ||||||||||||||| |||||    
T  13036955 actaacccccttaccttagataaagattaatcccaacttaggcttcaatttagctcctaagcttactccaat 13036884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 13321349 - 13321440
Alignment:
Q  87 actaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaa-ttgattcctcaagctattct 177  Q
    |||||||||| | |||||||| | |||||| ||||||    |||||| || |||||||||||||||||||| ||||||| ||||||| ||||    
T  13321349 actaacccccttaccttagataatgattaatccaaacctaggcttcactttagctcctaagcttaccccaatttgattcttcaagctcttct 13321440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 184
Target Start/End: Complemental strand, 14113933 - 14113823
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagcta 173  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||| |||||||||||| | | ||||| ||||| |     
T  14113933 gattatgataaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagcttctaagcttacccaattggattcttcaagttc 14113834  T
Q  174 ttcttttcaaa 184  Q
    |||| ||||||    
T  14113833 ttctcttcaaa 14113823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 14423571 - 14423474
Alignment:
Q  87 actaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaa 184  Q
    |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||| |||||||||||| | | ||||| ||||| | |||| ||||||    
T  14423571 actaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagcttctaagcttacccaattggattcttcaagttcttctcttcaaa 14423474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 42056218 - 42056101
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttacccca-attgattcctcaagct 172  Q
    ||||||| |||  |||||||||| | |||||||| |||||||| || ||||   |||||| || |||||||||||| |||| |  |||||| ||||||||    
T  42056218 gattatgataaagactaacccccttaccttagataaagattaatcccaacttaggcttcactttagctcctaagctcacccaatcttgattactcaagct 42056119  T
Q  173 attcttttcaaaaccctt 190  Q
     |||| | ||||||||||    
T  42056118 cttctctccaaaaccctt 42056101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 11516546 - 11516622
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagctt 150  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||||||||||||    
T  11516546 gattatgataaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagctcctaagctt 11516622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 15441508 - 15441432
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagctt 150  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||||||||||||    
T  15441508 gattatgataaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagctcctaagctt 15441432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 30262073 - 30261997
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagctt 150  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||||||||||||    
T  30262073 gattatgataaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagctcctaagctt 30261997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 5e-61; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 1556240 - 1556434
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| | || |||||||||| |     
T  1556240 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgaacatgattatgatgataactaaccccctta 1556339  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttc 194  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1556340 ccttagaagaagattaacacaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattctcttcaaaacccttgttc 1556434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 19610253 - 19610452
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||| | ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  19610253 aagagcacgaatttagcaataattgttcatcaacccattttcatacaacatcagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 19610352  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||| ||| ||||    
T  19610353 ccttagaagaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctcttctctccaaaaccctttttcttctc 19610452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 87 - 199
Target Start/End: Complemental strand, 1657678 - 1657566
Alignment:
Q  87 actaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaac 186  Q
    |||||||||| | ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1657678 actaacccccttaccttagaagaagattaacccaaactcttgtttcaattcagctcctaagcttaccccaattgattcctcaagctattctcttcaaaac 1657579  T
Q  187 ccttgttcatctc 199  Q
    |||||||| ||||    
T  1657578 ccttgttcttctc 1657566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 16232127 - 16232315
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  16232127 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 16232226  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||  |  |||| ||||||||| ||||| |||| | ||||||||||    
T  16232227 ccttagaagaagattaacccaaactcttgcttcaattcagctcctaag--tcacccacttgattcctaaagctcttctctccaaaaccctt 16232315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 15862804 - 15862916
Alignment:
Q  87 actaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaac 186  Q
    |||||||||| | ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  15862804 actaacccccttaccttagaagaagattaacccaaactcttgcttcaattcacctcctaagcttaccccaattgattcctcaagctattctcttcaaaac 15862903  T
Q  187 ccttgttcatctc 199  Q
     ||||||| ||||    
T  15862904 tcttgttcttctc 15862916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 23978004 - 23978194
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    |||||||||||||||||   |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||| ||| |     
T  23978004 aagagcacgaatttagccacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaacgccctta 23978103  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||| ||||| | |||| | ||||||||||    
T  23978104 ccttagaagaagattaacccaaactcttgcttcaatttagctcctaagcttacccaattggattcttcaagttcttctctccaaaaccctt 23978194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 18086844 - 18086697
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||  |||| |||||||||| |     
T  18086844 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatactaataactaaccccctta 18086745  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaag 147  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18086744 ccttagaagaagattaacccaaactcttgcttcaattcagctcctaag 18086697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 29869797 - 29869609
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacac-gattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||  |||||||| |||||||||||||||||| ||||||||| || ||| |||||   | |  ||||||| |||| |||||||||| |     
T  29869797 aagagcacgaatttgacatgaattgttcatcaacccattttcatacaacatgagaagatgtaaaattttaaattgattatgataataactaaccccctta 29869698  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||  |  |||| ||||||||| ||||| |||| | ||||||||||    
T  29869697 ccttagaagaagatcaacccaaactcttgcttcaattcagctcctaag--tcacccacttgattcctaaagctcttctctccaaaaccctt 29869609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 27654000 - 27653856
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    ||||||||||||||||||||| || |||||||| ||||||||| ||||||||| |||||||||||| ||||| ||||||| |||||||||||||||   |    
T  27654000 aagagcacgaatttagcatgatttgttcatcaatccattttcatacaacatgagaaaatgcaaaattacacatgattatgataatcactaaccccctcac 27653901  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctccta 145  Q
    ||| || |  ||||| | | ||| |||||||||||||||||||||    
T  27653900 ctttgaagttgattatctctaacccttgcttcaattcagctccta 27653856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 16825769 - 16825678
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaac 92  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||| ||||| ||||||| |||||||||||    
T  16825769 aagagcacgaatttagcatgaattgttcatcaacccattttcatacaacatgagaaaatgcaaaattacacatgattatgataatcactaac 16825678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 1650122 - 1649975
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||||| ||||||||||| |||||||||||||||||| ||||||||| ||||||||||||   ||| ||||||| |||  |||||||||| | |    
T  1650122 aagagcacgaatctagcatgaattgttcatcaacccattttcatacaacatgagaaaatgcaaaat--tacatgattatgataaagactaacccccttac 1650025  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaagctt 150  Q
    |||| ||||||||||  ||||||    ||||||||| |||||||||||||    
T  1650024 cttaaatgaagattagaccaaacctaggcttcaatttagctcctaagctt 1649975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 25175798 - 25175944
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatga-aaaaatgcaaaatcacacacgattatgttaatcactaacccccgtc 99  Q
    |||||||||||||||||||||||| |||||||| ||||||||| ||||||||| ||||||||||||| | ||| ||||||| ||||||||||||||| |     
T  25175798 aagagcacgaatttagcatgaattgttcatcaatccattttcatacaacatgagaaaaatgcaaaattatacatgattatggtaatcactaaccccctta 25175897  T
Q  100 ccttagatgaagattaac-ccaaactcttgcttcaattcagctccta 145  Q
    |||| || |  ||||| | | || | |||||||||||||||||||||    
T  25175898 cctttgaagttgattatctctaaccccttgcttcaattcagctccta 25175944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 4991445 - 4991524
Alignment:
Q  120 aaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctca 200  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  4991445 aaactcttgcttcaattcagctcctaatcttaccccaatt-attcctcaagctattctcttcaaaacccttgttcttctca 4991524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 22225759 - 22225588
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||||||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  22225759 aagagcacgaatttaacaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaacccccata 22225660  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || || |||||  || ||| |||||||||||||||||||| || | |||| |||||||||||||||||    
T  22225659 cctttgaagatgattattcctaacccttgcttcaattcagctcct-aggtcacccaaattgattcctcaagct 22225588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 22251587 - 22251416
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||||||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  22251587 aagagcacgaatttaacaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaacccccata 22251488  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || || |||||  || ||| |||||||||||||||||||| || | |||| |||||||||||||||||    
T  22251487 cctttgaagatgattattcctaacccttgcttcaattcagctcct-aggtcacccaaattgattcctcaagct 22251416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 16240401 - 16240468
Alignment:
Q  132 caattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  16240401 caattcagctcctaagcttaccccaattgattcctcaagctattctcttcaaaacccttgttcttctc 16240468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 16376394 - 16376223
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  16376394 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 16376295  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||||||||||    
T  16376294 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattcctcaagct 16376223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 16383718 - 16383547
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  16383718 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 16383619  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||||||||||    
T  16383618 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattcctcaagct 16383547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 10488934 - 10489105
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  10488934 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 10489033  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  10489034 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 10489105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 172
Target Start/End: Complemental strand, 16556158 - 16555989
Alignment:
Q  3 gagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtccc 101  Q
    ||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| | ||    
T  16556158 gagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaacccccttacc 16556059  T
Q  102 ttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    || || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  16556058 tttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 16555989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 172
Target Start/End: Complemental strand, 16632714 - 16632545
Alignment:
Q  3 gagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtccc 101  Q
    ||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| | ||    
T  16632714 gagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaacccccttacc 16632615  T
Q  102 ttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    || || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  16632614 tttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 16632545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 19299472 - 19299617
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| | |||||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  19299472 aagagcacgaatttaacaacaattgtccatcaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 19299571  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctccta 145  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||||    
T  19299572 cctttgaagttgattatctctaacccttgcttcaattcagctccta 19299617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 13620815 - 13620751
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa 65  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| |||||||||||    
T  13620815 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaa 13620751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 27751757 - 27751829
Alignment:
Q  87 actaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaatt 159  Q
    |||||||||| | |||||||| |||||||| |||||||   ||||||||| |||||||||||| |||||||||    
T  27751757 actaacccccttaccttagataaagattaatccaaacttaggcttcaatttagctcctaagctcaccccaatt 27751829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 190
Target Start/End: Original strand, 23995249 - 23995366
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttacccca-attgattcctcaagct 172  Q
    ||||||| |||  |||||||||| | |||||||| |||||||| || ||||   |||||| || |||||||||||| |||| |  |||||||||||||||    
T  23995249 gattatgataaagactaacccccttaccttagataaagattaatcccaacttaggcttcactttagctcctaagctcacccaatcttgattcctcaagct 23995348  T
Q  173 attcttttcaaaaccctt 190  Q
     |||| | ||||||||||    
T  23995349 cttctctccaaaaccctt 23995366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 29666211 - 29666287
Alignment:
Q  102 ttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaa-ttgattcctcaagctattct 177  Q
    |||||| | |||||| |||||||   ||||||||| |||||||||||| ||||||| ||||||| ||||||| ||||    
T  29666211 ttagataatgattaatccaaacttaggcttcaatttagctcctaagctcaccccaatttgattcttcaagctcttct 29666287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 3e-59; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 7132086 - 7131887
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| | ||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  7132086 aagagcacgaatttagcaacaattgttcatcaacccattttcatataacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 7131987  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  7131986 ccttagaagaagattaatccaaactcttgcttcaattcagctcctaatcttaccccaattgattcctcaagctattctcttcaaaacccttgttcttctc 7131887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 17145678 - 17145479
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||| |||| ||||||||| |||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  17145678 aagagcacgaatttaacatcaattgttcatcaactcattttcatacaacatgagaaaatgcaaaaattgaacatgattatgataataactaaccccctta 17145579  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  17145578 ccttagaagaagattaacacaaactcttacttcaattcagctcctaagcttaccccaattgattcctcaagctattctcttcaaaacccttgttcttctc 17145479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 47357889 - 47358075
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||  ||||||||||| |||   |||| || |||| |||||||||| | |    
T  47357889 aagagcacgaatttagcatgaattgttcatcaacccattttcatacaacatgaggaaatgcaaaattacat--gattgtgataataactaacccccttac 47357986  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| | ||||||||||    
T  47357987 cttagaagaagattaacccaa-ctcttgcttcaattcagctcctaagcttaccccaattgattccttaagctcttctctccaaaaccctt 47358075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 18169205 - 18169402
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  18169205 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 18169304  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    |||| || |||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  18169305 cctt-gaagaagattaaccctaattcttgcttcaattcagctccta-gcttaccccaattgattcctcaagctattctcttcaaaacccttgttcttctc 18169402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 74 - 199
Target Start/End: Original strand, 14996447 - 14996572
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagcta 173  Q
    ||||||| |||| |||||||||| | ||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14996447 gattatgataataactaacccccttaccttaaaagaagattaacccaaactcttgcttcaattcagctcctaaacttaccccaattgattcctcaagcta 14996546  T
Q  174 ttcttttcaaaacccttgttcatctc 199  Q
    |||| |||||||||||||||| ||||    
T  14996547 ttctcttcaaaacccttgttcttctc 14996572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 20000958 - 20001148
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    |||||||||||||||||   |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  20000958 aagagcacgaatttagccacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 20001057  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||| ||||| | |||| | ||||||||||    
T  20001058 ccttagaagaagattaacccaaactcttgcttcaatttagctcctaagcttacccaattggattcttcaagttcttctctccaaaaccctt 20001148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 15287266 - 15287078
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    |||||||||||||||||   |||| ||||||| |||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  15287266 aagagcacgaatttagctataattgttcatcatcccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 15287167  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||  |  |||| ||||||||| ||||| |||| | ||||||||||    
T  15287166 ccttagaagaagattaacccaaactcttgcttcaattcagctcctaag--tcacccacttgattcctaaagctcttctctccaaaaccctt 15287078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 26339254 - 26339408
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacac-gattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||  |||||||| |||||||||||||||||| |||||||||||| ||| |||||   | |  ||||||| |||| |||||||||| |     
T  26339254 aagagcacgaatttgacatgaattgttcatcaacccattttcatacaacatgaaaagatgtaaaatttgaaattgattatgataataactaaccccctta 26339353  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccc 154  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  26339354 ccttagaagaagattaacccaaactcttgcttcaatttagctcctaagcttaccc 26339408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 15294375 - 15294228
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    |||||||||||||||||   |||| ||||||| |||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  15294375 aagagcacgaatttagctataattgttcatcatcccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 15294276  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaag 147  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15294275 ccttagaagaagattaacccaaactcttgcttcaattcagctcctaag 15294228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 22352085 - 22351897
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacac-gattatgttaatcactaacccccgtc 99  Q
    ||||||| ||||||  |||||||| |||||||||||||||||| ||||||||| || ||| |||||   | |  ||||||| |||| |||||||||| |     
T  22352085 aagagcatgaatttgacatgaattgttcatcaacccattttcatacaacatgagaagatgtaaaatttgaaattgattatgataataactaaccccctta 22351986  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||  |  |||| ||||||||| ||||| |||| | ||||||||||    
T  22351985 ccttagaagaagattaacccaaactcttgcttcaattcagctcctaag--tcacccacttgattcctaaagctcttctctccaaaaccctt 22351897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 74 - 190
Target Start/End: Original strand, 14952087 - 14952201
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagcta 173  Q
    ||||||| |||  |||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||  |  |||| ||||||||| |||||     
T  14952087 gattatgataaagactaacccccttaccttagaagaagattaacccaaactcttgcttcaattcagctcctaag--tcacccacttgattcctaaagctc 14952184  T
Q  174 ttcttttcaaaaccctt 190  Q
    |||| | ||||||||||    
T  14952185 ttctctccaaaaccctt 14952201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 18248453 - 18248569
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatg-caaaatcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||| |||| |||||||||||||||||| ||||||||| ||||||  |||||   ||| ||||||| |||| |||||||||| |     
T  18248453 aagagcacgaatttaacatcaattgttcatcaacccattttcatacaacatgagaaaatgtaaaaattgtacaagattatgataataactaaccccctta 18248552  T
Q  100 ccttagatgaagattaa 116  Q
    |||||||||| ||||||    
T  18248553 ccttagatgatgattaa 18248569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 19020721 - 19020785
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa 65  Q
    |||||||||||||||||| ||||| |||||||||||||||||| ||||||||| |||||||||||    
T  19020721 aagagcacgaatttagcaagaattgttcatcaacccattttcatacaacatgacaaaatgcaaaa 19020785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 10644454 - 10644519
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaat 66  Q
    ||||||||||||||  |||||||| |||||||||||||||||| |||||||||  |||||||||||    
T  10644454 aagagcacgaatttgacatgaattgttcatcaacccattttcatacaacatgagcaaatgcaaaat 10644519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 8378386 - 8378450
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa 65  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| |||||| ||||    
T  8378386 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgtaaaa 8378450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 15272241 - 15272124
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttacccca-attgattcctcaagct 172  Q
    ||||||| |||  |||||||||| | |||||||| |||||||| || ||||   |||||| || |||||||||||| |||| |  |||||||||||||||    
T  15272241 gattatgataaagactaacccccttaccttagataaagattaatcccaacttaggcttcactttagctcctaagctcacccaatcttgattcctcaagct 15272142  T
Q  173 attcttttcaaaaccctt 190  Q
     |||| | ||||||||||    
T  15272141 cttctctccaaaaccctt 15272124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 22738504 - 22738568
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa 65  Q
    |||| |||||||||| ||| |||| ||| ||| |||||||||| ||||||||| |||||||||||    
T  22738504 aagaacacgaatttaacatcaattgttcctcagcccattttcatacaacatgagaaaatgcaaaa 22738568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 26680519 - 26680599
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccc 154  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||||||||||||||||    
T  26680519 gattatgataaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagctcctaagcttaccc 26680599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 187
Target Start/End: Complemental strand, 15135937 - 15135823
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttacccca-attgattcctcaagct 172  Q
    ||||||| |||  |||||||||| | |||||||| |||||||| || ||||   |||||| || |||||||||||| |||| |  |||||||||||||||    
T  15135937 gattatgataaagactaacccccttaccttagataaagattaatcccaacttaggcttcactttagctcctaagctcacccaatcttgattcctcaagct 15135838  T
Q  173 attcttttcaaaacc 187  Q
     |||| | |||||||    
T  15135837 cttctctccaaaacc 15135823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 13246739 - 13246824
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaatt 159  Q
    ||||||| |||  |||||||||| | |||||||| |||||||| || ||||   ||||||||| |||||||||||| || ||||||    
T  13246739 gattatgataaagactaacccccttaccttagataaagattaatcccaacttaggcttcaatttagctcctaagctcactccaatt 13246824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 16609043 - 16608967
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagctt 150  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||||||||||||    
T  16609043 gattatgataaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagctcctaagctt 16608967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 3e-59; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 16935828 - 16936027
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||| ||||||| ||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  16935828 aagagcatgaatttaacaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 16935927  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  16935928 ccttagaagaagattaacccaaactctttcttcaattcagctcctaagcttaccccaattgattcctcaagctattctcttcaaaacccttgttcttctc 16936027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 17006488 - 17006687
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||| ||||||| ||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  17006488 aagagcatgaatttaacaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 17006587  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  17006588 ccttagaagaagattaacccaaactctttcttcaattcagctcctaagcttaccccaattgattcctcaagctattctcttcaaaacccttgttcttctc 17006687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 42177990 - 42177791
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  42177990 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 42177891  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    ||||||| ||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  42177890 ccttagaagaagattaacctaaactcttgcttcaattcagcccctaatcttaccccaattgattcctcaagctattctcttcaaaacccttgttcttctc 42177791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 34824710 - 34824900
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| ||||||||||||||| |     
T  34824710 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataatcactaaccccctta 34824809  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||| ||||| | |||| | ||||||||||    
T  34824810 ccttagaagaagattaacccaaactcttgcttcaatttagctcctaagcttacccaattggattcttcaagttcttctctccaaaaccctt 34824900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 12641663 - 12641473
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    |||||||||||||||||   |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  12641663 aagagcacgaatttagccacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 12641564  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||| ||||| | |||| | ||||||||||    
T  12641563 ccttagatgaagattaacccaaactcttgcttcaatttagctcctaagcttacccaattggattcttcaagttcttctctccaaaaccctt 12641473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 12728627 - 12728817
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  12728627 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 12728726  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||| ||||| | |||| | ||||||||||    
T  12728727 ccttagaagaagattaacccaaactcttgcttcaatttagctcctaagcttacccaattggattcttcaagttcttctctccaaaaccctt 12728817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 3798624 - 3798434
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    |||||||||||||||||   |||| |||||||||||||||||| ||||||||| ||||||||||| | | ||| ||||||| |||| |||||||||| |     
T  3798624 aagagcacgaatttagccacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattatacatgattatgataataactaaccccctta 3798525  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| | | ||||| ||||| | |||| | ||||||||||    
T  3798524 ccttagaagaagattaacccaaactcttgcttcaatttagctcataagcttacccaattggattcttcaagttcttctctccaaaaccctt 3798434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 8944081 - 8944235
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  8944081 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 8944180  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccc 154  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  8944181 ccttagaagaagattaacccaaactcttgcttcaatttagctcctaagcttaccc 8944235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 12635889 - 12635699
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||| ||||||| |||||||||  |||||||||| |   ||| ||||||| |||| |||||||||| |     
T  12635889 aagagcacgaatttagcaacaattgttcatcaacctattttcatacaacatgaggaaatgcaaaaattgtacatgattatgataataactaaccccctta 12635790  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||| ||||| | |||| | ||||||||||    
T  12635789 ccttagaagaagattaacccaaactcttgcttcaatttagctcctaagcttacccaattggattcttcaagttcttctctccaaaaccctt 12635699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 23774371 - 23774561
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcaca-cacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||  |||||||| |||||||||||||||||| |||||||||||| ||| |||||   | |  ||||||| |||| |||||||||| |     
T  23774371 aagagcacgaatttgacatgaattgttcatcaacccattttcatacaacatgaaaagatgtaaaatttgaacttgattatgataataactaaccccctta 23774470  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||| ||||| | |||| | ||||||||||    
T  23774471 ccttagaagaagattaacccaaactcttgcttcaatttagctcctaagcttacccaattggattcttcaagttcttctctccaaaaccctt 23774561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 19886678 - 19886583
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaaccccc 96  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||| ||||| ||||||| |||| ||||||||||    
T  19886678 aagagcacgaatttagcatgaattgttcatcaacccattttcatacaacatgagaaaatgcaaaattacacatgattatgataataactaaccccc 19886583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 25213421 - 25213499
Alignment:
Q  120 aaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||| |||||||||||||||| ||||    
T  25213421 aaactcttgcttcaattcagctcctaatcttaccccaatt-attcctcaatctattctcttcaaaacccttgttcttctc 25213499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 11231359 - 11231188
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  11231359 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 11231260  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  11231259 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 11231188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 22513206 - 22513035
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  22513206 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 22513107  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  22513106 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 22513035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 23778066 - 23778002
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa 65  Q
    |||||||||||||||||| ||||| |||||||||||||||||| ||||||||| |||||||||||    
T  23778066 aagagcacgaatttagcaagaattgttcatcaacccattttcatacaacatgagaaaatgcaaaa 23778002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 24685802 - 24685631
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  24685802 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 24685703  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  24685702 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 24685631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 28775828 - 28775657
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  28775828 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 28775729  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  28775728 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 28775657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5888651 - 5888586
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaat 66  Q
    ||||||||||||||  |||||||| |||||||||||||||||| ||||||||| || ||| |||||    
T  5888651 aagagcacgaatttgacatgaattgttcatcaacccattttcatacaacatgagaagatgtaaaat 5888586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 21142130 - 21142178
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaac 49  Q
    ||||||||||||||| ||| |||| |||||||||||||||||| |||||    
T  21142130 aagagcacgaatttaacatcaattgttcatcaacccattttcatacaac 21142178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 14906384 - 14906308
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagctt 150  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||||||||||||    
T  14906384 gattatgataaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagctcctaagctt 14906308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 22863237 - 22863321
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaat 158  Q
    ||||||| |||  |||||||||| | |||||||| |||||||| || ||||   ||| ||||| |||||||||||| ||||||||    
T  22863237 gattatgataaagactaacccccttaccttagataaagattaatcccaacttaggctgcaatttagctcctaagctcaccccaat 22863321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 23820390 - 23820466
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagctt 150  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||||||||||||    
T  23820390 gattatgataaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagctcctaagctt 23820466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 25265320 - 25265224
Alignment:
Q  87 actaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaa-ttgattcctcaagctattcttttca 182  Q
    |||||||||| | | |||||| | |||||| ||||||    |||||| || |||||||||||||||||||| ||||||| ||||||| |||| ||||    
T  25265320 actaacccccttacattagataatgattaatccaaacctaggcttcactttagctcctaagcttaccccaatttgattcttcaagctcttctcttca 25265224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 3957 - 4149
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    |||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| ||||| |||| |     
T  3957 aagagcacgaatttagcaagaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaacccctta 4056  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgt 192  Q
    ||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  4057 ccttagaagatgattaaccctaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattgccttcaaaacccttgt 4149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 10769 - 10570
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  10769 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 10670  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    |||| || || ||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||| ||||    
T  10669 cctttgaagatgattaaccctaactcttgcttcaattcagctcctaatcttaccacaattgattcctcaagctattctcttcaaaacccttgttcttctc 10570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0761 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0761
Description:

Target: scaffold0761; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 1592 - 1412
Alignment:
Q  5 gcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtccctt 103  Q
    |||||| |||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| | ||||    
T  1592 gcacgattttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgaacatgattatgataataactaacccccttacctt 1493  T
Q  104 agatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaa 184  Q
    ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1492 agaagaagattaacccaaacccttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattctcttcaaa 1412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 34179 - 33980
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaaca-tgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgt 98  Q
    ||||||||||||||||||  |||||||||||||||||||| || |||||| ||| ||||||||||| |   ||| ||||||| | |  |||||||||| |    
T  34179 aagagcacgaatttagcaacaatttttcatcaacccattt-catacaacaatgagaaaatgcaaaaattgaacatgattatgatgaagactaaccccctt 34081  T
Q  99 cccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatct 198  Q
     ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||    
T  34080 accttagatgaagattaacccaaactcttgcttcaatttagctcctaagcttacgccaattgattcctcaagctattctcttcaaaacccttgttcttct 33981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 7477 - 7279
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    |||||||||||||||| |  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  7477 aagagcacgaatttagtaataattgttcatcaacccattttcatacaacatgagaaaatgcaaaaatggaacatgattatgataataactaaccccctta 7378  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    |||| || |||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  7377 cctttgaagaagattaaccctaattcttgcttcaattcagctccta-gcttaccccaattgattcctcaagctattctcttcaaaacccttgttcttctc 7279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 7e-51; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 22228043 - 22228236
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    |||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  22228043 aagagcacgaatttagcaagaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 22228142  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgtt 193  Q
    |||| || || ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||  |||||||||||||||    
T  22228143 cctttgaagatgattaaccctaactcttgcttcaattcagctcttaagcttaccccaattgattcttcaagttattcccttcaaaacccttgtt 22228236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 22232740 - 22232933
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    |||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  22232740 aagagcacgaatttagcaagaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaaccccctta 22232839  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgtt 193  Q
    |||| || || ||||||||| |||||||||||||||||||||| ||| ||||||||||||||||| ||||| |||||  |||||||||||||||    
T  22232840 cctttgaagatgattaaccctaactcttgcttcaattcagctcataaacttaccccaattgattcatcaagatattcacttcaaaacccttgtt 22232933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 46523624 - 46523813
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||||   ||| ||||||| |||| |||||||||| | |    
T  46523624 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaatggaacatgattatgataataactaacccccttac 46523723  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    |||||| |||||||||||||||||||||||| |||| | ||||||||||||||| | | ||||| ||||| | |||| | ||||||||||    
T  46523724 cttagaagaagattaacccaaactcttgctttaatttatctcctaagcttacccaattggattcttcaagttcttctctccaaaaccctt 46523813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 7640955 - 7640765
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacac-gattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||  |||||||| |||||||||||||||||| |||||||||||| ||| |||||   | |  ||||||| |||| |||||||||| |     
T  7640955 aagagcacgaatttgacatgaattgttcatcaacccattttcatacaacatgaaaagatgtaaaatttgaaattgattatgataataactaaccccctta 7640856  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||| ||||| | |||| | ||||||||||    
T  7640855 ccttagaagaagattaacccaaactcttgcttcaatttagctcctaagcttacccaattggattcttcaagttcttctctccaaaaccctt 7640765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 22035682 - 22035872
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacac-gattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||  |||||||| |||||||||||||||||| ||||||||| || ||| |||||   | |  ||||||| |||| |||||||||| |     
T  22035682 aagagcacgaatttgacatgaattgttcatcaacccattttcatacaacatgagaagatgtaaaatttgaaattgattatgataataactaaccccctta 22035781  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | | ||||| ||||| | |||| | ||||||||||    
T  22035782 ccttagaagaagattaacccaaactcttgcttcaattcagctcctaagcttacccaattggattcttcaagttcttctctccaaaaccctt 22035872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 18059779 - 18059608
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||||||||||||||||| ||||||||| |||||||||| || | ||| ||||||| |||| |||||||||| |     
T  18059779 aagagcacgaatttaacaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaagattatacatgattatgataataactaaccccctta 18059680  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || || |||||  || ||| |||||||||||||||||||| || | ||||||||||||||||||||||    
T  18059679 cctttgaagatgattattcctaacccttgcttcaattcagctcct-aggtcaccccaattgattcctcaagct 18059608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 45051657 - 45051804
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||| ||||||| ||||||||||| |||||||||||||||||| ||||||||| ||||||||||||  |||| ||||||| |||  |||||||||| | |    
T  45051657 aagaacacgaatctagcatgaattgttcatcaacccattttcatacaacatgagaaaatgcaaaat--cacatgattatgataaagactaacccccttac 45051754  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaagctt 150  Q
    |||| ||||||||||  ||||||    ||||||||| |||||||||||||    
T  45051755 cttaaatgaagattagaccaaacctaggcttcaatttagctcctaagctt 45051804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 5072405 - 5072260
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||| |||  ||||||||||    ||| |||| || |||| |||||||||| | |    
T  5072405 aagagcacgaatttagcatgaattgttcatcaacccattttcatacaacttgagtaaatgcaaaaatt-acatgattgtgataataactaacccccttac 5072307  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaag 147  Q
    ||| || |||||||||||| ||   ||||||||||||||||||||||    
T  5072306 ctttgaagaagattaaccctaatctttgcttcaattcagctcctaag 5072260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 2116492 - 2116636
Alignment:
Q  4 agcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtccctt 103  Q
    ||||||||| ||||||||||| |||||||||||||||| | ||||||||| ||||||||||||   ||| ||||||| ||||||||||||||  | ||||    
T  2116492 agcacgaatctagcatgaattgttcatcaacccatttttatacaacatgagaaaatgcaaaat--tacatgattatgataatcactaacccctttacctt 2116589  T
Q  104 agatgaagattaacccaaactcttgcttcaattcagctcctaagctt 150  Q
    | ||||||||||  ||||||    ||||||||| ||||| |||||||    
T  2116590 aaatgaagattagaccaaacctaggcttcaatttagctcataagctt 2116636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 15861356 - 15861254
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagcta 173  Q
    ||||||| |||  |||||||||| | |||| || || ||||||||| |||||||||||||||||||||||||  |||| |||||||||||||||||||||    
T  15861356 gattatgataaagactaacccccttacctttgaagatgattaaccctaactcttgcttcaattcagctcctagacttatcccaattgattcctcaagcta 15861257  T
Q  174 ttc 176  Q
    |||    
T  15861256 ttc 15861254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 17148802 - 17148974
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    |||||||||||||||||   |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| ||||||| |||| |||||||||| |     
T  17148802 aagagcacgaatttagccacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaattgtacatgattatgataataactaacccccctt 17148901  T
Q  100 -ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
     |||| || |  ||||| ||| ||| ||||||||||||||||||||| | | |||||| |||||||||||||||    
T  17148902 acctttgaagttgattatccccaacccttgcttcaattcagctcctatg-tcaccccacttgattcctcaagct 17148974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 17004873 - 17005044
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  17004873 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 17004972  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  17004973 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 17005044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 19962520 - 19962375
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| | |||||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  19962520 aagagcacgaatttaacaacaattgtccatcaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 19962421  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctccta 145  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||||    
T  19962420 cctttgaagttgattatctctaacccttgcttcaattcagctccta 19962375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 18601135 - 18601071
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa 65  Q
    ||||||| |||||||||||||||| |||||||||||||||||| |||||||||  ||||||||||    
T  18601135 aagagcatgaatttagcatgaattgttcatcaacccattttcatacaacatgagcaaatgcaaaa 18601071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 18598913 - 18598849
Alignment:
Q  82 taatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaag 147  Q
    |||| |||||||||| | ||||||| |||||||||||||| |||||||||||||||||||||||||    
T  18598913 taataactaacccccttaccttagaagaagattaacccaa-ctcttgcttcaattcagctcctaag 18598849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 38055109 - 38054941
Alignment:
Q  4 agcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtccct 102  Q
    |||||||||||| ||  |||| |||| ||||||||||||| ||||||||| || ||||||| ||   ||| ||||||| |||| |||||||||| | |||    
T  38055109 agcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaagatgcaaagattgtacatgattatgataataactaacccccttacct 38055010  T
Q  103 tagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    | || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  38055009 ttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 38054941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0383 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 2627 - 2803
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa--tcacacacgattatgttaatcactaacccccgt 98  Q
    ||||||||||||| ||||  |||| |||||||||||||||||| ||||||||| |||||||||||  |   ||| ||||||| |||| |||||||||| |    
T  2627 aagagcacgaattgagcaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaaatttgtacatgattatgataataactaaccccctt 2726  T
Q  99 cccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattc 176  Q
     ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2727 accttagaagaagattaacccaaactcttgcttcaattcagctcct-agcttaccccaattgattcctcaagctattc 2803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 5233 - 5034
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| || ||||| |||||||||||||||||| ||||| ||| ||||||||||| |   ||| ||||||| |||| |||||| ||| |     
T  5233 aagagcacgaatttaacaagaattgttcatcaacccattttcatacaacgtgagaaaatgcaaaaattgtacatgattatgataataactaactccctta 5134  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    |||| || || ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||  || ||||||||||||| ||||    
T  5133 cctttgaagatgattaaccctaactcttgcttcaattcagctcctaagcttaccccaattgattcttcaagctattcccttaaaaacccttgttcttctc 5034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 21133 - 20937
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||||||   ||| ||||||| |||| |||||||||| | |    
T  21133 aagagcacgaatttagcaagaattgttcatcaacccattttcatacaacatgagaaaatgcaaaattgtacatgattatgataataactaacccccttac 21034  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    ||| || || |||||| || ||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||  |||||||| ||||||| ||||    
T  21033 ctttgaagatgattaatcctaacccttgcttcaattcagctcct-agcttaccccaattgattcctcaagct-ttcccttcaaaactcttgttcttctc 20937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 14078 - 13883
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||| ||||||| ||||| | |||||||||||||||| ||||||||| ||||||||||||   ||| ||||||| |||| |||||||||| | |    
T  14078 aagagcacga-tttagcaagaattgtgcatcaacccattttcatacaacatgagaaaatgcaaaattgtacatgattatgataataactaacccccttac 13980  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    ||| || || |||||| || ||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||  |||||||| ||||||| ||||    
T  13979 ctttgaagatgattaatcctaacccttgcttcaattcagctcct-agcttaccccaattgattcctcaagct-ttcccttcaaaactcttgttcttctc 13883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 270 - 456
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    ||||||||||||||  |||||||| |||||||||||||||||| | |||||||  || |||||||| |||   |||| || |||| |||||||||| | |    
T  270 aagagcacgaatttgacatgaattgttcatcaacccattttcatataacatgagcaa-tgcaaaattacat--gattttgataataactaacccccttac 366  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    |||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || | ||||||||||    
T  367 cttagaagaagattaatccaaactctcgcttcaattcagctcctaagcttaccccaattgattcctcaagctctcctctccaaaaccctt 456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 74 - 199
Target Start/End: Complemental strand, 912 - 787
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagcta 173  Q
    ||||||| |||  |||||||||| | ||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  912 gattatgataaagactaacccccttaccttagaagaagattaaccccaactcttgattcaattcagctcctaagcttaccccaattgattcctcaagcta 813  T
Q  174 ttcttttcaaaacccttgttcatctc 199  Q
    |||  ||||||| |||||||| ||||    
T  812 ttcccttcaaaatccttgttcttctc 787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 64540 - 64395
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    ||||||||||||||  |||||||| |||||||||||||||||| |||||||||  ||||||||||    ||| |||| || |||| |||||||||| | |    
T  64540 aagagcacgaatttgacatgaattgttcatcaacccattttcatacaacatgagcaaatgcaaaaatt-acatgattgtgataataactaacccccttac 64442  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaag 147  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  64441 cttagaagaagattaacccaaactcttgcttcaattcagctcctaag 64395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 107983 - 108045
Alignment:
Q  3 gagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa 65  Q
    |||||||||||||| |  |||| |||||||||||||||||| ||||||||| |||||||||||    
T  107983 gagcacgaatttagtaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaaa 108045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 6832 - 6979
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacac-gattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||  |||||||| |||||||||||||||||| ||||||||| || ||| |||||   | |  ||||||| |||| |||||||||| |     
T  6832 aagagcacgaatttgacatgaattgttcatcaacccattttcatacaacatgagaagatgtaaaatttgaaattgattatgataataactaaccccctta 6931  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaag 147  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6932 ccttagaagaagattaacccaaactcttgcttcaattcagctcctaag 6979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 74 - 199
Target Start/End: Complemental strand, 108105 - 107980
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagcta 173  Q
    ||||||| |||  |||||||||| | |||||||||||||||||  | ||||   ||||||||||||||||||||||||||||||||||||||||| ||||    
T  108105 gattatgataaagactaacccccttaccttagatgaagattaattccaacttaggcttcaattcagctcctaagcttaccccaattgattcctcacgcta 108006  T
Q  174 ttcttttcaaaacccttgttcatctc 199  Q
    |||| |||||||||||||||| ||||    
T  108005 ttctcttcaaaacccttgttcttctc 107980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 31692 - 31548
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||| ||||||||| || ||||||||| ||||| ||||||| ||||||||||||||| | |    
T  31692 aagagcacgaatttagcatgaattgttcatcaactcattttcatacaacatgagaatatgcaaaattacacatgattatgataatcactaacccccttac 31593  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctccta 145  Q
     || || |  ||||| | | ||| |||||||||||||||||||||    
T  31592 atttgaagttgattatctctaacccttgcttcaattcagctccta 31548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1711 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold1711
Description:

Target: scaffold1711; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 1321 - 1176
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtcc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||  ||||||||||    ||| |||| || |||| |||||||||| | |    
T  1321 aagagcacgaatttagcatgaattgttcatcaacccattttcatacaacatgagtaaatgcaaaaatt-acatgattgtgataataactaacccccctac 1223  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaag 147  Q
    ||| || |||||||||||| ||  |||||||||||||||||||||||    
T  1222 ctttgaagaagattaaccctaatccttgcttcaattcagctcctaag 1176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0467 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0467
Description:

Target: scaffold0467; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 10360 - 10166
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa-tcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||||| |   ||| |||||||   |  || ||||||| |     
T  10360 aagagcacgaatttagcaacaattattcatcaacccattttcatacaacatgagaaaatgcaaaaattgaacatgattatgaagaagacaaaccccctta 10261  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaacccttgttc 194  Q
    |||||||||| ||||||||| ||||   |||||| || ||||| ||||||||||||||||||||||||||||| | || |  |||||||||||||    
T  10260 ccttagatgatgattaaccccaacttaggcttcactttagctcataagcttaccccaattgattcctcaagctttcctctctaaaacccttgttc 10166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 6020 - 5912
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagcta 173  Q
    ||||||| |||  |||||||||| | ||||||||  ||||||| || |||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  6020 gattatgataaagactaacccccttaccttagatagagattaatcctaactcttgcttcaattcagctcctaagcttactctaattgattcctcaagcta 5921  T
Q  174 ttcttttca 182  Q
    |||| ||||    
T  5920 ttctcttca 5912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 2 - 190
Target Start/End: Complemental strand, 23769 - 23582
Alignment:
Q  2 agagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacac-gattatgttaatcactaacccccgtcc 100  Q
    |||||||||||||  ||||| || |||||||||||||||||| ||||||||| || ||| |||||   | |  || |||| |||| |||||||||| |      
T  23769 agagcacgaatttgacatgagttgttcatcaacccattttcatacaacatgagaagatgtaaaatttgaaattgaatatgataataactaacccccttaa 23670  T
Q  101 cttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttcaaaaccctt 190  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||  |  |||| ||||||||| ||||| |||| | ||||||||||    
T  23669 cttagaagaagattaacccaaactcttgcttcaattcagttcctaag--tcacccacttgattcctaaagctcttctctccaaaaccctt 23582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 82 - 190
Target Start/End: Complemental strand, 154370 - 154264
Alignment:
Q  82 taatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagctattcttttc 181  Q
    |||| |||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||  |  |||| ||||||||| ||||| |||| | |    
T  154370 taataactaacccccttaccttagaagaagattaacccaaactcttgcttcaattcagctcctaag--tcacccacttgattcctaaagctcttctctcc 154273  T
Q  182 aaaaccctt 190  Q
    |||||||||    
T  154272 aaaaccctt 154264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0420 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0420
Description:

Target: scaffold0420; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 13342 - 13249
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaaccccc 96  Q
    |||||||||||| ||||||||||| |||||||||||||||||| ||||||||| |||||| |||||   ||| ||||||| |||||||||||||||    
T  13342 aagagcacgaatctagcatgaattgttcatcaacccattttcatacaacatgagaaaatgaaaaat--tacatgattatgataatcactaaccccc 13249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 31544 - 31715
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  31544 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 31643  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  31644 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 31715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 39881 - 39933
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatga 53  Q
    ||||||||||||||||||  |||| |||||||||||||||||| |||||||||    
T  39881 aagagcacgaatttagcaacaattgttcatcaacccattttcatacaacatga 39933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 39338 - 39509
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaacccccgtc 99  Q
    ||||||||||||||| ||  |||| |||| ||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| |||||||||| |     
T  39338 aagagcacgaatttaacaacaattgttcaccaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccctta 39437  T
Q  100 ccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||| || |  ||||| | | ||| |||||||||||||||||||| || | |||| |||||||||| ||||||    
T  39438 cctttgaagttgattatctctaacccttgcttcaattcagctcct-aggtcacccaaattgattccccaagct 39509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 43232 - 43298
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatga-aaaaatgcaaaat 66  Q
    ||||||||||||||  ||||||||  ||||||||||||||||| ||||||||| |||||||||||||    
T  43232 aagagcacgaatttgacatgaattgctcatcaacccattttcatacaacatgagaaaaatgcaaaat 43298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 17750 - 17697
Alignment:
Q  146 agcttaccccaattgattcctcaagctattcttttcaaaacccttgttcatctc 199  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  17750 agcttaccccaattgattcctcaagctattctcttcaaaacccttgttcttctc 17697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 54109 - 54173
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa 65  Q
    ||||||||||||||||||| |||| |||||||||||||||||| | ||||||| |||||||||||    
T  54109 aagagcacgaatttagcatcaattgttcatcaacccattttcataaaacatgagaaaatgcaaaa 54173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0215 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0215
Description:

Target: scaffold0215; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 9363 - 9260
Alignment:
Q  4 agcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtccctt 103  Q
    |||||||||||  |||||||| |||||||||||||||||| |||||||||  |||||||||||   ||| |||| || |||| |||||||||| | ||||    
T  9363 agcacgaatttgacatgaattgttcatcaacccattttcatacaacatgagcaaatgcaaaat--tacatgattgtgataataactaacccccttacctt 9266  T
Q  104 agatga 109  Q
    ||||||    
T  9265 agatga 9260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0215; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 16261 - 16158
Alignment:
Q  4 agcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaatcacacacgattatgttaatcactaacccccgtccctt 103  Q
    |||||||||||  |||||||| |||||||||||||||||| |||||||||  |||||||||||   ||| |||| || |||| |||||||||| | ||||    
T  16261 agcacgaatttgacatgaattgttcatcaacccattttcatacaacatgagcaaatgcaaaat--tacatgattgtgataataactaacccccttacctt 16164  T
Q  104 agatga 109  Q
    ||||||    
T  16163 agatga 16158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0892 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0892
Description:

Target: scaffold0892; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 3648 - 3712
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaa 65  Q
    |||||||| |||||||||| |||| |||||||||||||||||| | ||||||| |||||||||||    
T  3648 aagagcactaatttagcatcaattgttcatcaacccattttcataaaacatgagaaaatgcaaaa 3712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0772 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0772
Description:

Target: scaffold0772; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 170
Target Start/End: Original strand, 5848 - 5943
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaag 170  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||||||||||||| ||||||||||||||||||    
T  5848 gattatggtaaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagctcctaagctta-cccaattgattcctcaag 5943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 29397 - 29493
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaa-atcacacacgattatgttaatcactaaccccc 96  Q
    ||||||||||||||| ||  |||| |||||||||||||||||| ||||||||| |||||||||| ||   ||| ||||||| |||| ||||||||||    
T  29397 aagagcacgaatttaacaacaattgttcatcaacccattttcatacaacatgagaaaatgcaaagattgtacatgattatgataataactaaccccc 29493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7444 - 7509
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaacatgaaaaaatgcaaaat 66  Q
    ||||||||||||||  |||||||| |||||||||||||||||| ||||||||| || ||| |||||    
T  7444 aagagcacgaatttgacatgaattgttcatcaacccattttcatacaacatgagaagatgtaaaat 7509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 12078 - 12150
Alignment:
Q  87 actaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaatt 159  Q
    |||||||||| |  ||||||| | |||||| ||||||| | ||||||||| ||||||||||||||||||||||    
T  12078 actaacccccttatcttagataatgattaatccaaactttggcttcaatttagctcctaagcttaccccaatt 12150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 158
Target Start/End: Complemental strand, 26370 - 26286
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaat 158  Q
    ||||||| |||  |||||||||| | ||||||||||||||||| || | ||   ||||||||| |||||||||||| || |||||    
T  26370 gattatgataaagactaacccccttaccttagatgaagattaatcccatcttaggcttcaatttagctcctaagctcactccaat 26286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 130882 - 130979
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    ||||||| |||  |||||||||| | |||| || || |||||  || ||| |||||||||||||||||||| || | ||||||||||||||||||||||    
T  130882 gattatgataaagactaacccccttacctttgaagatgattatgcctaacccttgcttcaattcagctcct-aggtcaccccaattgattcctcaagct 130979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0367 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0367
Description:

Target: scaffold0367; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 17226 - 17142
Alignment:
Q  87 actaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaattgattcctcaagct 172  Q
    |||||||||| | ||||||| ||  ||||  || ||| |||||||||||||||||||| || | ||||||||||||||||||||||    
T  17226 actaacccccttaccttagaagattattattcctaacccttgcttcaattcagctcct-aggtcaccccaattgattcctcaagct 17142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 13315 - 13198
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttacccca-attgattcctcaagct 172  Q
    ||||||| |||  |||||||||| | |||||||| |||||||| || ||||   |||||| || |||||||||||| |||| |  |||||||||||||||    
T  13315 gattatgataaagactaacccccttaccttagataaagattaatcccaacttaggcttcactttagctcctaagctcacccaatcttgattcctcaagct 13216  T
Q  173 attcttttcaaaaccctt 190  Q
     |||| | ||||||||||    
T  13215 cttctctccaaaaccctt 13198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12148 - 12100
Alignment:
Q  1 aagagcacgaatttagcatgaatttttcatcaacccattttcacacaac 49  Q
    ||||||||||||||| ||| |||| |||||||||||||||||| |||||    
T  12148 aagagcacgaatttaacatcaattgttcatcaacccattttcatacaac 12100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 37010 - 36930
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccc 154  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||||||||||||||||    
T  37010 gattatgataaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagctcctaagcttaccc 36930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 25546 - 25608
Alignment:
Q  87 actaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagct 149  Q
    |||||||||| | |||||||| | ||||||||||||||   ||||||||| ||||||||||||    
T  25546 actaacccccttaccttagataaggattaacccaaacttaggcttcaatttagctcctaagct 25608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0597 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0597
Description:

Target: scaffold0597; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 908 - 835
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaag 147  Q
    ||||||| |||  |||||||||| | ||||||||||||||||| || ||||   ||||||||| ||||||||||    
T  908 gattatgataaagactaacccccttaccttagatgaagattaatcccaacttaggcttcaatttagctcctaag 835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0465 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0465
Description:

Target: scaffold0465; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 9912 - 9839
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaag 147  Q
    ||||||| |||  |||||||||| | ||||||||||||||||| || ||||   ||||||||| ||||||||||    
T  9912 gattatgataaagactaacccccttaccttagatgaagattaatcccaacttaggcttcaatttagctcctaag 9839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 57422 - 57305
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaa-ttgattcctcaagct 172  Q
    ||||||| |||  |||||||||| | |||||||| |||||||| || ||||   |||||| || |||| ||||||| |||| |  |||||||||||||||    
T  57422 gattatgataaagactaacccccttaccttagataaagattaatcccaacttaggcttcactttagctactaagctcacccaatcttgattcctcaagct 57323  T
Q  173 attcttttcaaaaccctt 190  Q
     |||| | ||||||||||    
T  57322 cttctctccaaaaccctt 57305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 146908 - 147008
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagcttaccccaa--ttgattcctcaagc 171  Q
    ||||||| |||  |||||||||| | |||||||| |||||||| || ||||   ||||||||| |||||||||||| || ||||  ||||||| ||||||    
T  146908 gattatgataaagactaacccccttaccttagataaagattaatcccaacttaggcttcaatttagctcctaagctcactccaatcttgattcttcaagc 147007  T
Q  172 t 172  Q
    |    
T  147008 t 147008  T

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Target: scaffold0141 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 22859 - 22935
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagctt 150  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||||||||||||    
T  22859 gattatgataaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagctcctaagctt 22935  T

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Target: scaffold0141; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 27114 - 27190
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagctt 150  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||||||||||||    
T  27114 gattatgataaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagctcctaagctt 27190  T

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Target: scaffold0124 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 1526 - 1450
Alignment:
Q  74 gattatgttaatcactaacccccgtcccttagatgaagattaacccaaactcttgcttcaattcagctcctaagctt 150  Q
    ||||||| |||  |||||||||| | ||||||||||||||||  ||||||    ||||||||| |||||||||||||    
T  1526 gattatgataaagactaacccccttaccttagatgaagattagaccaaacctaggcttcaatttagctcctaagctt 1450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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