View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_low_8 (Length: 599)
Name: NF13955_low_8
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 494; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 45 - 581
Target Start/End: Complemental strand, 47372178 - 47371642
Alignment:
| Q |
45 |
tctaaaatataaaccttttcagcaagtgagtgcaaataaa-gtatcatacacgaataaaggttggtcagaaaatcaaccaactctagtttctagataaat |
143 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47372178 |
tctaaaatataaaccttttcagcaagtgagcgcaaataaaagtatcatacacgaataaaggttggtcagaaaatcaaccaactctagtttctagataaat |
47372079 |
T |
|
| Q |
144 |
ttcaacttactttaaatttgtaatatatcatggaaataacaagtcataataattttttcataaacaaagtaagtaattgactatacattcaaaatgacat |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47372078 |
ttcaacttactttaaatttgtaatatatcatggaaataacaagtcataaattttttttcataaacaaagtaagtaattgactatacattcaaaatgacat |
47371979 |
T |
|
| Q |
244 |
atacattcttattttaccaagttggtgagcttccttcaaagaaaatttcaaaactctcttggcacgcagagtaaacaatttcttttaataacggcaaaat |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47371978 |
atacattcttattttaccaagttggtgagcttccttcaatgaaaatttcaaaactctcttggcacgcatagtaaacaatttcttttaataacggcaaaat |
47371879 |
T |
|
| Q |
344 |
cactatctctcctaattatcttttcacgtgcatctttcagttaatttcatacatccgtttacataaatattggtgccctccacccaacaaaatatattct |
443 |
Q |
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| T |
47371878 |
cactatctctcctaattatcttttcacgtgcatctttcagttaatttcatacattcgtttacataaatattggtg-cctccacccaacaaaatatattct |
47371780 |
T |
|
| Q |
444 |
tattcgacaaaatagtgtcacaacatctaagaatgttcactcaaattggtgaaacactatgcatctccgtcgctaccaatgttcacaacatctttcagtt |
543 |
Q |
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| T |
47371779 |
tattcgacaaaatagtgtcacaacatctaagaatgttcactcaaattggtgaaacactatgcatctccgtcgctaccaatgttcacaacatctttcagtt |
47371680 |
T |
|
| Q |
544 |
ttatgagattagggatatgttcgaataaatagtatatg |
581 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
47371679 |
ttatgagattagggatatgttcgaataaatagtatatg |
47371642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 319
Target Start/End: Complemental strand, 47814793 - 47814730
Alignment:
| Q |
256 |
tttaccaagttggtgagcttccttcaaagaaaatttcaaaactctcttggcacgcagagtaaac |
319 |
Q |
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| T |
47814793 |
tttaccaagttggcgagcttcctccaatgagagttccaaaactctcttggcacgcggagtaaac |
47814730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 47379246 - 47379184
Alignment:
| Q |
257 |
ttaccaagttggtgagcttccttcaaagaaaatttcaaaactctcttggcacgcagagtaaac |
319 |
Q |
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|||||||||||| ||||||||| ||| || | || ||||||||||||||||||| |||||||| |
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| T |
47379246 |
ttaccaagttggcgagcttcctccaatgagagttccaaaactctcttggcacgcggagtaaac |
47379184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 319
Target Start/End: Complemental strand, 40242339 - 40242276
Alignment:
| Q |
256 |
tttaccaagttggtgagcttccttcaaagaaaatttcaaaactctcttggcacgcagagtaaac |
319 |
Q |
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|||||||||||| ||||||||| ||| || | || ||||||||||||||||||| |||||||| |
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| T |
40242339 |
tttaccaagttgacgagcttcctccaatgagagttccaaaactctcttggcacgcggagtaaac |
40242276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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