View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13956_high_1 (Length: 635)
Name: NF13956_high_1
Description: NF13956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13956_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 26)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 18 - 633
Target Start/End: Original strand, 30059953 - 30060568
Alignment:
| Q |
18 |
gtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttaaacaagttaattttccaatgttaggaaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30059953 |
gtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttagacaagttaattttccaatgttaggaaac |
30060052 |
T |
|
| Q |
118 |
atacgagacaaagattcacattctctaatgactatatgtttaagattttgtaaacaagtcaagcctttcggaagacaactcagtttattgcaatatttta |
217 |
Q |
| |
|
|| |||||||||| |||| || ||||||||||||| ||||||||||||| |||| ||||| ||| || ||||||||||||||| || | ||||| |
|
|
| T |
30060053 |
atgagagacaaagaccgacatacttcaatgactatatgtctaagattttgtaagcaagccaagcgttttgggagacaactcagtttacgacagtctttta |
30060152 |
T |
|
| Q |
218 |
ttttcaatatttcgagnnnnnnnaggttgtaaattgaatcaggcaacttttctatgttaagataacaaatttccaaataccttaaatgaattaaactacc |
317 |
Q |
| |
|
||||||| ||||| || | |||||||||||| ||||||||||||| ||| | |||| ||| || |||||||||||||||||||||||||||||| |
|
|
| T |
30060153 |
ttttcaagatttccagtttttgtaagttgtaaattgagtcaggcaacttttttatatcaagagaacgaagttccaaataccttaaatgaattaaactacc |
30060252 |
T |
|
| Q |
318 |
tagtaatggctctcggataaaggttatgcataaaacccgaagagaaaggtttgttgggaagtaatcatgtttttcttttgacaaagttctacaaaactca |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
30060253 |
tagtaatggctctcggataaaggttatgcataaaacccgaagagaaaggtttgttgggaagtaatcatgtttttcttttgaaaaagtactacaaaactca |
30060352 |
T |
|
| Q |
418 |
aaccatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtctttattgtcaaaactaatgtggtgtgtgctttttgacaaac |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30060353 |
aaccatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtctttattgtcaaaactaatgtggtgtgtgctttttgacaaac |
30060452 |
T |
|
| Q |
518 |
tagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaagatcatgcatcttgaatgaaatgtcgccaga |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30060453 |
tagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaaggtcatgcatcttgaatgaaatgtcgccaga |
30060552 |
T |
|
| Q |
618 |
aaattcatccattttt |
633 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30060553 |
aaattcatccattttt |
30060568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 633
Target Start/End: Original strand, 30749227 - 30749842
Alignment:
| Q |
18 |
gtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttaaacaagttaattttccaatgttaggaaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30749227 |
gtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttagacaagttaattttccaatgttaggaaac |
30749326 |
T |
|
| Q |
118 |
atacgagacaaagattcacattctct-aatgactatatgtttaagattttgtaaacaagtcaagcctttcggaagacaactcagtttattgcaatatttt |
216 |
Q |
| |
|
|| |||||||||||| |||| || | ||||||||||||| ||||||||||||| |||| ||||| ||| || ||||||||||||||| || |||| |
|
|
| T |
30749327 |
atgagagacaaagatttacat-ctgtcaatgactatatgtctaagattttgtaagcaagccaagcgttttgggagacaactcagtttacgacagcgtttt |
30749425 |
T |
|
| Q |
217 |
attttcaatatttcgagnnnnnnnaggttgtaaattgaatcaggcaacttttctatgttaagataacaaatttccaaataccttaaatgaattaaactac |
316 |
Q |
| |
|
|||||||| ||||| || | |||||||||||| | ||||||||||| ||| | |||| ||| || ||||||||||||||||||||||||||| | |
|
|
| T |
30749426 |
attttcaagatttccagtttttgtaagttgtaaattgagttaggcaacttttttatatcaagagaacgaagttccaaataccttaaatgaattaaactcc |
30749525 |
T |
|
| Q |
317 |
ctagtaatggc-tctcggataaaggttatgcataaaacccgaagagaaaggtttgttgggaagtaatcatgtttttcttttgacaaagttctacaaaact |
415 |
Q |
| |
|
||||| ||||| ||| ||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| |
|
|
| T |
30749526 |
ctagtgatggcatct-ggataaaggatgtgcgtaaaacccgaagagaaaggtttgttgggaagtaatcatgtttttcttttgacaaaatactacacaact |
30749624 |
T |
|
| Q |
416 |
caaaccatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtctttattgtcaaaactaatgtggtgtgtgctttttgacaa |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
30749625 |
caaaccatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtcgttattgtcaaaactaatatggtgtgtgcttttcgacaa |
30749724 |
T |
|
| Q |
516 |
actagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaagatcatgcatcttgaatgaaatgtcgcca |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30749725 |
actagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaagatcatgaatcttgaatgaaatgtcgcca |
30749824 |
T |
|
| Q |
616 |
gaaaattcatccattttt |
633 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
30749825 |
gaaaattcatccattttt |
30749842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 632
Target Start/End: Complemental strand, 30242891 - 30242280
Alignment:
| Q |
18 |
gtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttaaacaagttaattttccaatgttaggaaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30242891 |
gtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatatacacacttaatgttcttagacaagttaattttccaatgttaggaaac |
30242792 |
T |
|
| Q |
118 |
atacgagacaaagattcacattctctaatgactatatgtttaagattttgtaaacaagtcaagcctttcggaagacaactcagtttattgcaatatttta |
217 |
Q |
| |
|
|| |||||||||| ||||||| |||||||||||||| ||||||||||||| |||| |||| ||| || ||||||||||||||| |||| ||||| |
|
|
| T |
30242791 |
atgagagacaaagaccgacattctttaatgactatatgtctaagattttgtaagcaagccaagtgttttgggagacaactcagtttacgacaatgtttta |
30242692 |
T |
|
| Q |
218 |
ttttcaatatttcgagnnnnnnnaggttgtaaattgaatcaggcaacttttctatgttaagataacaaatttccaaataccttaaatgaattaaactacc |
317 |
Q |
| |
|
||||||| ||||| || |||||||||||||| |||||||| |||| |||| |||| ||| || ||||||||||||||||||||||||||| || |
|
|
| T |
30242691 |
ttttcaagatttccagcttttttaggttgtaaattgagtcaggcaaatttttgatgtcaagagaacgaagttccaaataccttaaatgaattaaactccc |
30242592 |
T |
|
| Q |
318 |
tagtaatggctctcggataaaggttatgcataaaacccgaagagaaaggtttgttgggaagtaatcatgtttttcttttgacaaagttctacaaaactca |
417 |
Q |
| |
|
|||| ||||| |||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| || | | || |||| | |
|
|
| T |
30242591 |
tagtgatggcatccggataaaggatgtgcataaaacccgaagagaaaggtatgttgggaagttatcatgttttt-ttttggcataat--aactcaactga |
30242495 |
T |
|
| Q |
418 |
aaccatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtctttattgtcaaaactaatgtggtgtgtgctttttgacaaac |
517 |
Q |
| |
|
||| |||||| ||||||||||||| |||||||||||| ||| || ||||||||| ||||||| | |||||||| |||||||||||||||||||||||||| |
|
|
| T |
30242494 |
aacaatgttctcaaggattcaacttttttgaaagcattcttatcaaaggataacaagtctttgtagtcaaaaccaatgtggtgtgtgctttttgacaaac |
30242395 |
T |
|
| Q |
518 |
tagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaagatcatgcatcttgaatgaaatgtcgccaga |
617 |
Q |
| |
|
| |||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
30242394 |
tggtcatgtttttgttctccaaatacatacattctggccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccaga |
30242295 |
T |
|
| Q |
618 |
aaattcatccatttt |
632 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
30242294 |
atattcatccatttt |
30242280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 629
Target Start/End: Complemental strand, 30677687 - 30677079
Alignment:
| Q |
18 |
gtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttaaacaagttaattttccaatgttaggaaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30677687 |
gtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttaaacaagttaattttctaatgttaggaaac |
30677588 |
T |
|
| Q |
118 |
atacgagacaaagattcacattctctaatgactatatgtttaagattttgtaaacaagtcaagcctttcggaagacaactcagtttattgcaatatttta |
217 |
Q |
| |
|
|||||||||||||||||||| | | ||||||||||||| |||||||||||||||||| ||||| ||| ||||| || || ||||||| || | ||||| |
|
|
| T |
30677587 |
atacgagacaaagattcacaatattcaatgactatatgtctaagattttgtaaacaagccaagcgttttggaagccagctaagtttatcacagtgtttta |
30677488 |
T |
|
| Q |
218 |
ttttcaatatttcgagnnnnnnnaggttgtaaattgaatcaggcaacttttctatgttaagataacaaatttccaaataccttaaatgaattaaactacc |
317 |
Q |
| |
|
||||||| ||||| || |||||||||||||| ||||||||| | | ||||| |||| ||| || ||||||||||||||||||||||||||| || |
|
|
| T |
30677487 |
ttttcaagatttccagcttttttaggttgtaaattgagtcaggcaacatatttatgtcaagagaacgaagttccaaataccttaaatgaattaaactccc |
30677388 |
T |
|
| Q |
318 |
tagtaatggctctcggataaaggttatgcataaaacccgaagagaaaggtttgttgggaagtaatcatgtttttcttttgacaaagttctacaaaactca |
417 |
Q |
| |
|
|||| ||||| |||||||||| | |||||||||||||||||||||||| |||||||||| |||||||||||| ||| || || || |||| | |
|
|
| T |
30677387 |
tagtgatggcatccggataaaggatgtgcataaaacccgaagagaaaggtatgttgggaagaaatcatgtttttttttggaataa---taactcaactga |
30677291 |
T |
|
| Q |
418 |
aaccatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtctttattgtcaaaactaatgtggtgtgtgctttttgacaaac |
517 |
Q |
| |
|
||| |||||| ||||||||||||| |||||||||||| ||| || ||||||||| ||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
30677290 |
aacaatgttctcaaggattcaacttttttgaaagcattcttatcaaaggataacaagtctttgaggtcaaaaccaatgtggtgtgtgctttttgacaaac |
30677191 |
T |
|
| Q |
518 |
tagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaagatcatgcatcttgaatgaaatgtcgccaga |
617 |
Q |
| |
|
| |||| |||| ||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| || |||||||| ||||| |
|
|
| T |
30677190 |
tggtcatgttttttttctccaaatacatacattctggccccattactaattgagcgagatcatggacaagatcatgcatcttaaaagaaatgtctccaga |
30677091 |
T |
|
| Q |
618 |
aaattcatccat |
629 |
Q |
| |
|
| |||||||||| |
|
|
| T |
30677090 |
atattcatccat |
30677079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 633
Target Start/End: Original strand, 30399661 - 30400273
Alignment:
| Q |
18 |
gtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttaaacaagttaattttccaatgttaggaaac |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| |
|
|
| T |
30399661 |
gtttagatcacgtaactctgacaagctattccctttctctaaactaacaatgtacacacttaatgtttttagactagttaattttccaatgttaggaaac |
30399760 |
T |
|
| Q |
118 |
atacgagacaaagattcacattctctaatgactatatgtttaagattttgtaaacaagtcaagcctttcggaagacaactcagtttattgcaatatttta |
217 |
Q |
| |
|
|| |||||||||||| ||| | | ||| ||||||||| ||||||||||||| ||| ||||| ||| || |||||| |||||| | |||| ||||| |
|
|
| T |
30399761 |
attcgagacaaagatatacaatattcaataactatatgtctaagattttgtaagaaagccaagcgttttgggagacaaatcagttcaccacaatgtttta |
30399860 |
T |
|
| Q |
218 |
ttttcaatatttcgagnnnnnnnaggttgtaaattgaatcaggcaacttttctatgttaagataacaaatttccaaataccttaaatgaattaaactacc |
317 |
Q |
| |
|
||||||| |||| || | |||||||||||| |||||||||| || ||||| ||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
30399861 |
ttttcaaggtttccagtttttgtaagttgtaaattgagtcaggcaactcttgtatgtcaagataaagaagctccaaataccttaaatgaattaaactacc |
30399960 |
T |
|
| Q |
318 |
tagtaatggctctcggataaaggttatgcataaaacccgaagagaaaggtttgttgggaagtaatcatgtttttcttttgacaaagttctacaaaactca |
417 |
Q |
| |
|
|||||||||| | |||||||||||| |||||||||||||||||||| ||| ||||||||||||||| |||| |||||||| ||||| | |||||||| |
|
|
| T |
30399961 |
tagtaatggcccccggataaaggttgtgcataaaacccgaagagaagggtctgttgggaagtaatcctgttcttcttttggaaaagt---agaaaactca |
30400057 |
T |
|
| Q |
418 |
aaccatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtctttattgtcaaaactaatgtggtgtgtgctttttgacaaac |
517 |
Q |
| |
|
|||||||||||||||||||||||| || |||| ||| ||| ||||| |||||| | | | | || |||||| ||||||||||||||||||||||||| |
|
|
| T |
30400058 |
aaccatgttcgcaaggattcaacttttctgaaggcaccctcatcgaatgataacaaattatcagagttaaaacttatgtggtgtgtgctttttgacaaac |
30400157 |
T |
|
| Q |
518 |
tagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaagatcatgcatcttgaatgaaatgtcgccaga |
617 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30400158 |
tagtcatgtttgcattctccaaatatatacattcttgccccattactgacttagcgagatcatggacaagatcatgcatcttgaatgaaatgttgccaga |
30400257 |
T |
|
| Q |
618 |
aaattcatccattttt |
633 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30400258 |
aaattcatccattttt |
30400273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 629
Target Start/End: Original strand, 29871771 - 29872369
Alignment:
| Q |
19 |
tttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttaaacaagttaattttccaatgttaggaaaca |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29871771 |
tttagatcacgtaactctgtcaaactattccctttctctaaactaacaatgtacacacttaatgttcttaaacaagttaattttccaatgttaggaaaca |
29871870 |
T |
|
| Q |
119 |
tacgagacaaagattcacattctctaatgactatatgtttaagattttgtaaacaagtcaagcctttcggaagacaactcagtttattgcaatattttat |
218 |
Q |
| |
|
||| |||||||||| ||||||| ||||||||||||| |||||||||||||||||| ||||| ||||||||| || || ||||||| || |||||||| |
|
|
| T |
29871871 |
tactagacaaagatcgacattcttcaatgactatatgtctaagattttgtaaacaagccaagcgtttcggaagccagctaagtttatcacagtattttat |
29871970 |
T |
|
| Q |
219 |
tttcaatatttcgagnnnnnnnaggttgtaaattgaatcaggcaacttttctatgttaagataacaaatttccaaataccttaaatgaattaaactacct |
318 |
Q |
| |
|
|||||| ||||| || || ||||||||||| ||||||||||||| ||||| |||| ||| || | ||||||||||||||||||||||||| || |
|
|
| T |
29871971 |
tttcaagatttccagcttttttagattgtaaattgagtcaggcaacttttttatgtcaagaaaacgaagtcccaaataccttaaatgaattaaactcccc |
29872070 |
T |
|
| Q |
319 |
agtaatggctctcggataaaggttatgcataaaacccgaagagaaaggtttgttgggaagtaatcatgtttttcttttgacaaagttctacaaaactcaa |
418 |
Q |
| |
|
||| ||||| |||||||||| | |||||||||||| |||||||| | || |||||||| |||||||||| ||||| || | ||||| | |
|
|
| T |
29872071 |
agtgatggcatccggataaaggatgcgcataaaacccggagagaaagatatgctgggaagttatcatgtttt--ttttggtaa------gaataactc-a |
29872161 |
T |
|
| Q |
419 |
accatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtctttattgtcaaaactaatgtggtgtgtgctttttgacaaact |
518 |
Q |
| |
|
|| |||||| ||||||||||||| |||||||||||| | || ||||||||| |||| | ||||| | ||||||||||||||||||||||||||| |
|
|
| T |
29872162 |
acaatgttctcaaggattcaacttttttgaaagcattttcatcaaaggataac---actttgtagtcaacaacaatgtggtgtgtgctttttgacaaact |
29872258 |
T |
|
| Q |
519 |
agtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaagatcatgcatcttgaatgaaatgtcgccagaa |
618 |
Q |
| |
|
|||| |||| |||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
29872259 |
ggtcatgtttttgttctccaaatgcatacattcttgccccattattgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccagaa |
29872358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 629
Target Start/End: Complemental strand, 30713941 - 30713336
Alignment:
| Q |
18 |
gtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttaaacaagttaattttccaatgttaggaaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30713941 |
gtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttagacaagttaattttccaatgttaggaaac |
30713842 |
T |
|
| Q |
118 |
atacgagacaaagattcacattctctaatgactatatgtttaagattttgtaaacaagtcaagcctttcggaagacaactcagtttattgcaatatttta |
217 |
Q |
| |
|
|| |||||||||||| ||||||| ||||||||||||| |||||||||||||||||| ||||| ||||||||| ||||| |||||||| || | ||||| |
|
|
| T |
30713841 |
attcgagacaaagatcgacattcttcaatgactatatgtctaagattttgtaaacaagccaagcgtttcggaaggcaactaagtttattacagtgtttta |
30713742 |
T |
|
| Q |
218 |
ttttcaatatttcgagnnnnnnnaggttgtaaattgaatcaggcaacttttctatgttaagataacaaatttccaaataccttaaatgaattaaactacc |
317 |
Q |
| |
|
||||||| ||||| || | |||||||||||| ||||||||||||| |||| |||| || |||||||||||||||||||||||||||||| | |
|
|
| T |
30713741 |
ttttcaagatttccagtttttgtaagttgtaaattgagtcaggcaacttttttatgccaagagaatgaatttccaaataccttaaatgaattaaactcc- |
30713643 |
T |
|
| Q |
318 |
tagtaatggctctcggataaaggttatgcataaaacccgaagagaaaggtttgttgggaagtaatcatgtttttcttttgacaaagttctacaaaactca |
417 |
Q |
| |
|
|| ||| | | | ||||| | ||| |||||| |||||||| |||| |||||||| ||||||||||| || | | | |||| | || ||| |
|
|
| T |
30713642 |
--atactgggacctgtagaaaggatgtgcttaaaactcgaagagagctgtttaatgggaagtgatcatgttttt-ttgcaatataattctcc--aagtca |
30713548 |
T |
|
| Q |
418 |
aaccatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtctttattgtcaaaactaatgtggtgtgtgctttttgacaaac |
517 |
Q |
| |
|
||| ||||||| |||||||||||| ||||||| ||| ||| ||||| |||||| | | || | || |||||| |||||||||||| |||||| |||| |
|
|
| T |
30713547 |
aacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaatttttcagagtgaaaacttatgtggtgtgtgttttttgtcaaat |
30713448 |
T |
|
| Q |
518 |
tagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaagatcatgcatcttgaatgaaatgtcgccaga |
617 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||||||||||||| || || ||||||| ||||| |
|
|
| T |
30713447 |
tagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaagatcatgcattttaaaagaaatgtttccaga |
30713348 |
T |
|
| Q |
618 |
aaattcatccat |
629 |
Q |
| |
|
| |||||||||| |
|
|
| T |
30713347 |
atattcatccat |
30713336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 18 - 618
Target Start/End: Original strand, 30206109 - 30206706
Alignment:
| Q |
18 |
gtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttaaacaagttaattttccaatgttaggaaac |
117 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||| |
|
|
| T |
30206109 |
gtttagatcgtgtaactctgccaagctattccctttctctaaactaacaatgtacacacttaatgttcttagacaggttaattttccaatgtatggaaac |
30206208 |
T |
|
| Q |
118 |
atacgagacaaagattcacattctctaatgactatatgtttaagattttgtaaacaagtcaagcctttcggaagacaactcagtttattgcaatatttta |
217 |
Q |
| |
|
|| || |||| || | || ||| ||||||| | |||| | ||||| |||||||||| |||||||||||||||||| || ||||| | |||| ||||| |
|
|
| T |
30206209 |
atgtgaaacaatgaatggcaatctttaatgacaagatgtctgagattctgtaaacaagccaagcctttcggaagacagctaagtttttgacaatctttta |
30206308 |
T |
|
| Q |
218 |
ttttcaatatttcgagnnnnnnnaggttgtaaattgaatcaggcaacttttctatgttaagataacaaatttccaaataccttaaatgaattaaactacc |
317 |
Q |
| |
|
||||||| ||||| || | |||||||||||| || |||||| ||| ||| | |||| ||| || ||||||||||||||||||||||||||| || |
|
|
| T |
30206309 |
ttttcaagatttccagtttttgtaagttgtaaattgagtccggcaacatttttatttcaagagaacgaagttccaaataccttaaatgaattaaactccc |
30206408 |
T |
|
| Q |
318 |
tagtaatggctctcggataaaggttatgcataaaacccgaagagaaaggtttgttgggaagtaatcatgtttttcttttgacaaagttctacaaaactca |
417 |
Q |
| |
|
|||| |||| | ||||||||| | |||||||||||||||| ||| |||||||||| |||||||||||||| ||| | || | | ||| || | |
|
|
| T |
30206409 |
tagtgatggtacctggataaaggatgtgcataaaacccgaagggaacggtttgttggcgagtaatcatgttttgttttggtgtaa-tgattcaa--ctga |
30206505 |
T |
|
| Q |
418 |
aaccatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtctttattgtcaaaactaatgtggtgtgtgctttttgacaaac |
517 |
Q |
| |
|
||| |||||| ||||||||||||| | |||| ||| ||| |||||| |||||| ||| | || || |||||| |||||||||||||||||||||||| |
|
|
| T |
30206506 |
aacaatgttctcaaggattcaactttcctgaaggcaccctcgtcgaatgataacacgtcatcatagtgaaaacttatgtggtgtgtgctttttgacaaag |
30206605 |
T |
|
| Q |
518 |
tagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaagatcatgcatcttgaatgaaatgtcgccaga |
617 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
30206606 |
tagtcatgtttgaattctccaaatacatacattcttgacccattactgattgagcaagatcatggacaagatcatgcatcttgaaagaaatgtctccaga |
30206705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 629
Target Start/End: Original strand, 30435406 - 30436011
Alignment:
| Q |
18 |
gtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttaaacaagttaattttccaatgttaggaaac |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
30435406 |
gtttagatcatgtaactctgtcaagctatttcctttctctaaactaacaatgtacacacttaatgttcttagacaagttaattttccaatgttgggaaac |
30435505 |
T |
|
| Q |
118 |
atacgagacaaagattcacattctctaatgactatatgtttaagattttgtaaacaagtcaagcctttcggaagacaactcagtttattgcaatatttta |
217 |
Q |
| |
|
|| ||| | |||||| ||||| || ||||||||||||| ||||||||||||| ||| ||||| ||| || ||||||||||||| | |||||||||| |
|
|
| T |
30435506 |
attcgaaataaagatccacatccttcaatgactatatgtctaagattttgtaagcaaaccaagcgttttgggagacaactcagttcacgacaatatttta |
30435605 |
T |
|
| Q |
218 |
ttttcaatatttcgagnnnnnnnaggttgtaaattgaatcaggcaacttttctatgttaagataacaaatttccaaataccttaaatgaattaaactacc |
317 |
Q |
| |
|
||||||| ||||| || | |||||||||||| | ||||||||||| ||| | |||| |||||| ||||||||||||||||||||||||||| | |
|
|
| T |
30435606 |
ttttcaagatttccagtttttgtaagttgtaaattgagttaggcaacttttttatatcaagagaacaaagttccaaataccttaaatgaattaaactcc- |
30435704 |
T |
|
| Q |
318 |
tagtaatggctctcggataaaggttatgcataaaacccgaagagaaaggtttgttgggaagtaatcatgtttttcttttgacaaagttctacaaaactca |
417 |
Q |
| |
|
|| ||| || | | | ||| | ||| |||||| |||||||| |||| |||||||| ||||||||||| || | | | |||| | || ||| |
|
|
| T |
30435705 |
--atactgggccttgtagagaggatgtgcttaaaactcgaagagagctgtttaatgggaagtgatcatgttttt-ttggaatataattctcc--aagtca |
30435799 |
T |
|
| Q |
418 |
aaccatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtctttattgtcaaaactaatgtggtgtgtgctttttgacaaac |
517 |
Q |
| |
|
||| ||||||| |||||||||||| ||||||| ||| ||| ||||| |||||| | | || | || |||||| |||||||||||| |||||| |||| |
|
|
| T |
30435800 |
aacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagttaaaacttatgtggtgtgtgttttttgtcaaat |
30435899 |
T |
|
| Q |
518 |
tagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaagatcatgcatcttgaatgaaatgtcgccaga |
617 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| | |
|
|
| T |
30435900 |
tagtcatgtttgcattctccaaatacatacattctttccccgttactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccaaa |
30435999 |
T |
|
| Q |
618 |
aaattcatccat |
629 |
Q |
| |
|
| |||||||||| |
|
|
| T |
30436000 |
atattcatccat |
30436011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 30339044 - 30338748
Alignment:
| Q |
18 |
gtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttaaacaagttaattttccaatgttaggaaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
30339044 |
gtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttagacaagataattttccaatgttaggaaac |
30338945 |
T |
|
| Q |
118 |
atacgagacaaagattcacattctctaatgactatatgtttaagattttgtaaacaagtcaagcctttcggaagacaactcagtttattgcaatatttta |
217 |
Q |
| |
|
|| |||||||||| ||||||| |||||||||||| ||||||||||||| |||| ||||| ||| ||||||||||||||||||| ||| ||||| |
|
|
| T |
30338944 |
attagagacaaagaccgacattcttcaatgactatatgcctaagattttgtaagcaagccaagcgttttggaagacaactcagtttatcacaacgtttta |
30338845 |
T |
|
| Q |
218 |
ttttcaatatttcgagnnnnnnnaggttgtaaattgaatcaggcaacttttctatgttaagataacaaatttccaaataccttaaatgaattaaact |
314 |
Q |
| |
|
||||||| ||||| || | |||||||||||| | ||||||||||||||||| ||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
30338844 |
ttttcaagatttccagtttttgtaagttgtaaattgagttaggcaacttttctatgtcaagataagtaagttccaaataccttaaatgaattaaact |
30338748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 30482988 - 30483284
Alignment:
| Q |
18 |
gtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttaaacaagttaattttccaatgttaggaaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30482988 |
gtttagatcacgtaactctgtcaagctattccctttctctacactaacaatgtacacacttaatgttcttagacaagttaattttccaatgttaggaaac |
30483087 |
T |
|
| Q |
118 |
atacgagacaaagattcacattctctaatgactatatgtttaagattttgtaaacaagtcaagcctttcggaagacaactcagtttattgcaatatttta |
217 |
Q |
| |
|
|| |||||||||| ||||||| |||||||||||| ||||||||||||| |||| ||||| ||| || ||||||||||| ||| || | ||||| |
|
|
| T |
30483088 |
atttgagacaaagaccgacattcttcaatgactatatgcctaagattttgtaagcaagccaagcgttttgggagacaactcagattacgacagtctttta |
30483187 |
T |
|
| Q |
218 |
ttttcaatatttcgagnnnnnnnaggttgtaaattgaatcaggcaacttttctatgttaagataacaaatttccaaataccttaaatgaattaaact |
314 |
Q |
| |
|
||||||| ||||| || | |||||||||||| | ||||||||||||||||| ||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
30483188 |
ttttcaagatttccagtttttgtaagttgtaaattgagttaggcaacttttctatgtcaagataaataagttccaaataccttaaatgaattaaact |
30483284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 29852895 - 29853191
Alignment:
| Q |
18 |
gtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttaaacaagttaattttccaatgttaggaaac |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||| ||||||||||||||| |
|
|
| T |
29852895 |
gtttagatcacataactctgtcaagctattccctttctctaaactaacaatgtacatgcttaatgttcttagacaagataatttgccaatgttaggaaac |
29852994 |
T |
|
| Q |
118 |
atacgagacaaagattcacattctctaatgactatatgtttaagattttgtaaacaagtcaagcctttcggaagacaactcagtttattgcaatatttta |
217 |
Q |
| |
|
|| ||||||||||| |||| || |||||||||||||| ||||||||||||| |||| |||| |||||| ||||||||||||| | ||| | ||||| |
|
|
| T |
29852995 |
atgagagacaaagatcgacatcctttaatgactatatgtctaagattttgtaagcaagccaagtgtttcgggagacaactcagttcaccgcagtctttta |
29853094 |
T |
|
| Q |
218 |
ttttcaatatttcgagnnnnnnnaggttgtaaattgaatcaggcaacttttctatgttaagataacaaatttccaaataccttaaatgaattaaact |
314 |
Q |
| |
|
||||||||||||| || | |||||||||||| || |||||| ||| ||||| |||| ||| || ||||||||||||||||||||||||||| |
|
|
| T |
29853095 |
ttttcaatatttccagtttttgtaagttgtaaattgagtccggcaacatttttatgtcaagagaacgaagttccaaataccttaaatgaattaaact |
29853191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 415 - 629
Target Start/End: Complemental strand, 30338647 - 30338433
Alignment:
| Q |
415 |
tcaaaccatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtctttattgtcaaaactaatgtggtgtgtgctttttgaca |
514 |
Q |
| |
|
|||||| | |||||||||||||||||| |||||||||||| | ||||||||||| ||| || ||||||||| ||||||||||||||||||||||| |
|
|
| T |
30338647 |
tcaaacaaagttcgcaaggattcaacttttttgaaagcattttcatcgaaggataaaaagttgttgctgtcaaaaccaatgtggtgtgtgctttttgaca |
30338548 |
T |
|
| Q |
515 |
aactagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaagatcatgcatcttgaatgaaatgtcgcc |
614 |
Q |
| |
|
|| ||||| |||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
30338547 |
aattagtcgtgtttttattctccaaacacatacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctcc |
30338448 |
T |
|
| Q |
615 |
agaaaattcatccat |
629 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
30338447 |
agaatattcatccat |
30338433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 415 - 629
Target Start/End: Original strand, 30483385 - 30483599
Alignment:
| Q |
415 |
tcaaaccatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtctttattgtcaaaactaatgtggtgtgtgctttttgaca |
514 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||| | ||||||||||| | | || ||| ||||| ||||||||||||||||||||||| |
|
|
| T |
30483385 |
tcaaacaatgttcgcaaggattcaacttttttgaaagcattttcatcgaaggataaaaatttcttgctgttaaaaccaatgtggtgtgtgctttttgaca |
30483484 |
T |
|
| Q |
515 |
aactagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaagatcatgcatcttgaatgaaatgtcgcc |
614 |
Q |
| |
|
|| ||||| |||| |||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
30483485 |
aattagtcgtgtttttattctccaaacacgtacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctcc |
30483584 |
T |
|
| Q |
615 |
agaaaattcatccat |
629 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
30483585 |
agaatattcatccat |
30483599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 486 - 629
Target Start/End: Original strand, 29853363 - 29853506
Alignment:
| Q |
486 |
aaaactaatgtggtgtgtgctttttgacaaactagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggaca |
585 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29853363 |
aaaacttatgtggtgtgtgctttttgtcaaactagtcatgtttgcattctccaaatacacacattcttgccccattactgattgagcgagatcatggaca |
29853462 |
T |
|
| Q |
586 |
agatcatgcatcttgaatgaaatgtcgccagaaaattcatccat |
629 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| |||||||||| |
|
|
| T |
29853463 |
agatcatgcatcttgaaaaaaatgtctccagagtattcatccat |
29853506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 422 - 611
Target Start/End: Complemental strand, 30331249 - 30331060
Alignment:
| Q |
422 |
atgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtctttattgtcaaaactaatgtggtgtgtgctttttgacaaactagt |
521 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||| | | |||| |||||| | | || ||||||||| ||||| || |||||||||| ||||||||| |
|
|
| T |
30331249 |
atgttcgcaaggattcaacttttttgaaggcaccgtcatcgattgataacaaattattggagtcaaaacttatgtgatgggtgctttttgtcaaactagt |
30331150 |
T |
|
| Q |
522 |
caagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaagatcatgcatcttgaatgaaatgtc |
611 |
Q |
| |
|
|| |||||||||||||| ||||||| ||| |||| ||| || ||||||||||||||||| || ||||||| || |||| || |||||||| |
|
|
| T |
30331149 |
catgtttgcattctccagatacatatattgttgctccagtattgattgagcaagatcattgaaaagatcacgcgtctttaaagaaatgtc |
30331060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 412 - 553
Target Start/End: Complemental strand, 17418291 - 17418150
Alignment:
| Q |
412 |
aactcaaaccatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtctttattgtcaaaactaatgtggtgtgtgctttttg |
511 |
Q |
| |
|
|||| |||| |||||||||||||||||||| ||||||| ||||||| | || |||| |||||| | | || ||||| ||||||||||||||||||| |
|
|
| T |
17418291 |
aactgaaacaatgttcgcaaggattcaacttttttgaaggcatcctcattgagtgatagcgagtcatcagagtgaaaacatatgtggtgtgtgctttttg |
17418192 |
T |
|
| Q |
512 |
acaaactagtcaagtttgcattctccaaatacatacattctt |
553 |
Q |
| |
|
||||| || ||| |||||||||||| |||||||||||||||| |
|
|
| T |
17418191 |
acaaaataatcatgtttgcattctctaaatacatacattctt |
17418150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 17418676 - 17418576
Alignment:
| Q |
18 |
gtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttaaacaagttaattttccaatgttaggaaac |
117 |
Q |
| |
|
||||||||||| ||||||| ||||||||| ||| ||||| ||||||||||||| | ||||||||||||| | ||||||||||||| ||| ||||||| |
|
|
| T |
17418676 |
gtttagatcacctaactctaccaagctattacctctctctgaactaacaatgtataagcttaatgttcttagagaagttaattttccgatgcaaggaaac |
17418577 |
T |
|
| Q |
118 |
a |
118 |
Q |
| |
|
| |
|
|
| T |
17418576 |
a |
17418576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 499 - 608
Target Start/End: Original strand, 17982972 - 17983081
Alignment:
| Q |
499 |
tgtgtgctttttgacaaactagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaagatcatgcatct |
598 |
Q |
| |
|
||||| ||||||||||| |||||| ||||||||| ||| || |||||| |||||| |||||||||||||||||||||||| ||||| ||||| | |
|
|
| T |
17982972 |
tgtgtactttttgacaagttagtcacagatgcattctctaaaaccacacattcatgccccgctactgattgagcaagatcatggacgagatcgtgcattt |
17983071 |
T |
|
| Q |
599 |
tgaatgaaat |
608 |
Q |
| |
|
|||| ||||| |
|
|
| T |
17983072 |
tgaaagaaat |
17983081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 564 - 609
Target Start/End: Complemental strand, 30521601 - 30521556
Alignment:
| Q |
564 |
tgattgagcaagatcatggacaagatcatgcatcttgaatgaaatg |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
30521601 |
tgattgagcaagatcatggacaagatcatgcaacttgaaagaaatg |
30521556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 564 - 609
Target Start/End: Complemental strand, 30561941 - 30561896
Alignment:
| Q |
564 |
tgattgagcaagatcatggacaagatcatgcatcttgaatgaaatg |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
30561941 |
tgattgagcaagatcatggacaagatcatgcaacttgaaagaaatg |
30561896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 531 - 611
Target Start/End: Original strand, 30475472 - 30475552
Alignment:
| Q |
531 |
attctccaaatacatacattcttgccccattactgattgagcaagatcatggacaagatcatgcatcttgaatgaaatgtc |
611 |
Q |
| |
|
|||||||||| |||||| ||| |||||| |||||||||||||||||||| || || |||||||||||||| | |||||| |
|
|
| T |
30475472 |
attctccaaaatcatacactctgaccccataactgattgagcaagatcatgcactaggtcatgcatcttgaaagtaatgtc |
30475552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 602
Target Start/End: Original strand, 15347065 - 15347102
Alignment:
| Q |
565 |
gattgagcaagatcatggacaagatcatgcatcttgaa |
602 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
15347065 |
gattgagcaagatcatgaacaagatcatgcatcgtgaa |
15347102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 570 - 603
Target Start/End: Original strand, 16396737 - 16396770
Alignment:
| Q |
570 |
agcaagatcatggacaagatcatgcatcttgaat |
603 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
16396737 |
agcaagatcatgaacaagatcatgcatcttgaat |
16396770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 602
Target Start/End: Original strand, 17927655 - 17927692
Alignment:
| Q |
565 |
gattgagcaagatcatggacaagatcatgcatcttgaa |
602 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
17927655 |
gattgagcaagatcatgaacaagatcatgcattttgaa |
17927692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 602
Target Start/End: Original strand, 15335696 - 15335732
Alignment:
| Q |
566 |
attgagcaagatcatggacaagatcatgcatcttgaa |
602 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
15335696 |
attgagcaagatcatgaacaagatcatgcattttgaa |
15335732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 629
Target Start/End: Original strand, 26706928 - 26707530
Alignment:
| Q |
18 |
gtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttaaacaagttaattttccaatgttaggaaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| |||||||| |
|
|
| T |
26706928 |
gtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttagacaggataattttccaatgctaggaaac |
26707027 |
T |
|
| Q |
118 |
atacgagacaaagattcacattctctaatgactatatgtttaagattttgtaaacaagtcaagcctttcggaagacaactcagtttattgcaatatttta |
217 |
Q |
| |
|
|| |||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||| |||| |||| ||||| |
|
|
| T |
26707028 |
attcgagacaaagatccacatccttcaatgactatatgtctaagattttgtaaacaagtcaagtgtttaggaagacaactcagattatcacaatctttta |
26707127 |
T |
|
| Q |
218 |
ttttcaatatttcgagnnnnnnnaggttgtaaattgaatcaggcaacttttctatgttaagataacaaatttccaaataccttaaatgaattaaactacc |
317 |
Q |
| |
|
||||||| ||||| || | |||||||||||| | ||| ||||||| ||| | |||||||| || |||||||||||||||||||||||| || || |
|
|
| T |
26707128 |
ttttcaagatttccagtttttttaagttgtaaattgagttaggaaacttttttatatcaagataacgaagttccaaataccttaaatgaattaagctccc |
26707227 |
T |
|
| Q |
318 |
tagtaatggctctcggataaaggttatgcataaaacccgaagagaaaggtttgttgggaagtaatcatgtttttcttttgacaaagttctacaaaactca |
417 |
Q |
| |
|
|||| || | | || | ||||||||||||||||||| ||||| |||||||| |||||| |||| || | | | |||| | || ||| |
|
|
| T |
26707228 |
tagtgataatacctg------ggatgtgcataaaacccgaagagagcggtttaatgggaagtgatcatggtttt-ttggggaataattcttc--aagtca |
26707318 |
T |
|
| Q |
418 |
aaccatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtctttattgtcaaaactaatgtggtgtgtgctttttgacaaac |
517 |
Q |
| |
|
||| |||||||||||||||||||| ||||||| | ||| ||||| ||||| | | || |||||| ||||||||||||||||||| ||||| |
|
|
| T |
26707319 |
aacaatgttcgcaaggattcaacttttttgaagataccctcatcgaatgataaaaaagtatcggagttaaaacttatgtggtgtgtgctttttgtcaaac |
26707418 |
T |
|
| Q |
518 |
tagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaagatcatgcatcttgaatgaaatgtcgccaga |
617 |
Q |
| |
|
|| ||| ||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
26707419 |
tactcatgtttgcattctccaaatacatgcattcttgtcccattactgattgagcgagatcatggataagatcatgcatcttgaaagaaatgtctccaga |
26707518 |
T |
|
| Q |
618 |
aaattcatccat |
629 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
26707519 |
atattcacccat |
26707530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 4e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 19 - 632
Target Start/End: Complemental strand, 20297109 - 20296490
Alignment:
| Q |
19 |
tttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttaaacaagttaattttccaatgttaggaaaca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||| |
|
|
| T |
20297109 |
tttagatcacgtaactctgtcaagctattccctttctttaaactaacaatgtacacacttaatgttcttagacaagataattttccaatgctaggaaaca |
20297010 |
T |
|
| Q |
119 |
tacgagacaaagattcacattctctaatgactatatgtttaagattttgtaaacaagtcaagcctttcggaagacaactcagtttattgcaatattttat |
218 |
Q |
| |
|
| ||||||||||| ||| ||| ||||||||||||| |||||||||||| || | |||| |||||||||||||||||| |||| || | |||| |
|
|
| T |
20297009 |
ttcgagacaaagaccaacaatcttcaatgactatatgtctaagattttgtaggcaggccaagtgtttcggaagacaactcagattatcacagcgtattat |
20296910 |
T |
|
| Q |
219 |
tttcaatatttcgagnnnnnnnaggttgtaaattgaatcaggcaacttttctatgttaagataacaaatttccaaataccttaaatgaattaaactacct |
318 |
Q |
| |
|
|||||| |||| | | |||||||||||| |||||||||| || |||| ||||| || || |||||||||||||||||||||||||| || |
|
|
| T |
20296909 |
tttcaaggtttccaatttttgcaagttgtaaattgagtcaggcaactcttttatgacaagattacgaagctccaaataccttaaatgaattaaactctct |
20296810 |
T |
|
| Q |
319 |
agtaatggctctcggataaaggttatgcataaaacccgaagagaaaggtttgttgggaagtaatcatgtttttcttttgacaaagttctacaa------a |
412 |
Q |
| |
|
||| || || | || |||||| | ||| |||||||||||||||||||||||||||| ||||||||| | | ||| || || | || | |
|
|
| T |
20296809 |
agtgatcgcacatgggtaaaggatgtgcgcaaaacccgaagagaaaggtttgttgggatgtaatcatgatctattttggaataatgatgataatcactca |
20296710 |
T |
|
| Q |
413 |
actcaaaccatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtctttattgtcaaaactaatgtggtgtgtgctttttga |
512 |
Q |
| |
|
||| |||| |||||||||||||||||||| |||||| ||| |||||| || ||||||| ||||| | | |||||||| |||||||||||||||| ||| |
|
|
| T |
20296709 |
actgaaacaatgttcgcaaggattcaacttctttgaaggcacccttgttgatggataacaagtctgtgtagtcaaaaccaatgtggtgtgtgcttcgtga |
20296610 |
T |
|
| Q |
513 |
caaactagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaagatcatgcatcttgaatgaaatgtcg |
612 |
Q |
| |
|
|||| |||| | |||| || |||||||||||||||||||| ||||| |||||| ||| ||||||| |||||||||||||||||||| |||| || |
|
|
| T |
20296609 |
caaattagtaacgtttttatcctccaaatacatacattctttccccactactgaatgaaggagatcataaacaagatcatgcatcttgaaataaatatct |
20296510 |
T |
|
| Q |
613 |
ccagaaaattcatccatttt |
632 |
Q |
| |
|
| |||| ||||||| ||||| |
|
|
| T |
20296509 |
ctagaatattcatctatttt |
20296490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 525 - 611
Target Start/End: Original strand, 52352049 - 52352135
Alignment:
| Q |
525 |
gtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaagatcatgcatcttgaatgaaatgtc |
611 |
Q |
| |
|
||||| |||||||| | |||||| ||| |||||| | |||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
52352049 |
gtttgtattctccataatcatacactctggccccacaattgattgagcaagatcatgtacaagatcatgcatcttgaaagaaatgtc |
52352135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 7099009 - 7099193
Alignment:
| Q |
19 |
tttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttaaacaagttaattttccaatgttaggaaaca |
118 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||| ||| ||||||| || |||||||| |||||||| |||| |||||||||||||| |||||||| |
|
|
| T |
7099009 |
tttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataattttccaatgtgaggaaaca |
7099108 |
T |
|
| Q |
119 |
tacgagacaaagattcacattctctaatgactatatgtttaagattttgtaaacaagtcaagcctttcggaagacaactcagttt |
203 |
Q |
| |
|
| |||||||| || | ||| || ||||| || |||| ||||||||||||| |||| |||| || ||||||||||||||||| |
|
|
| T |
7099109 |
tgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcagttt |
7099193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 487 - 608
Target Start/End: Original strand, 7099474 - 7099595
Alignment:
| Q |
487 |
aaactaatgtggtgtgtgctttttgacaaactagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaa |
586 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||||| | |||||| || ||| |||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
7099474 |
aaactaatatgatgtgtgctttttgacaagttagtcacatatgcattatctaaaaccatacattcttgcccccctactgattgagcaagatcatggacga |
7099573 |
T |
|
| Q |
587 |
gatcatgcatcttgaatgaaat |
608 |
Q |
| |
|
|||||||||| ||||| ||||| |
|
|
| T |
7099574 |
gatcatgcattttgaaagaaat |
7099595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 7582239 - 7582056
Alignment:
| Q |
17 |
agtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttaaacaagttaattttccaatgttaggaaa |
116 |
Q |
| |
|
||||||||||||||||||| | ||||||| |||||||| || | ||||| || ||||||||||||||||| |||| ||||||||||| | | |||| |
|
|
| T |
7582239 |
agtttagatcacgtaactccgctaagctatgtcctttctcggaatttacaatataaacacttaatgttcttaagcaagataattttccaacatgacgaaa |
7582140 |
T |
|
| Q |
117 |
catacgagacaaagattcacattctctaatgactatatgtttaagattttgtaaacaagtcaagcctttcggaagacaactcag |
200 |
Q |
| |
|
||| |||||||| | | ||| ||| |||||||| |||| ||||||||||||| |||| |||| || ||||||||||||||| |
|
|
| T |
7582139 |
catgcgagacaacaaatgacaatcttcaatgactaaatgtctaagattttgtaagcaagacaagtgttccggaagacaactcag |
7582056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 487 - 611
Target Start/End: Complemental strand, 7581772 - 7581648
Alignment:
| Q |
487 |
aaactaatgtggtgtgtgctttttgacaaactagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaa |
586 |
Q |
| |
|
|||||||| || || ||||||||||||| | | ||||| | ||||||| ||| ||||||||||||| ||| ||||||| ||||||||||||||| | |
|
|
| T |
7581772 |
aaactaatatgatgggtgctttttgacatatttgtcaaacattcattctctaaaaccatacattcttgcaccactactgatcgagcaagatcatggatga |
7581673 |
T |
|
| Q |
587 |
gatcatgcatcttgaatgaaatgtc |
611 |
Q |
| |
|
|||||||||| ||||| |||||||| |
|
|
| T |
7581672 |
gatcatgcattttgaaagaaatgtc |
7581648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 144 - 388
Target Start/End: Complemental strand, 25294262 - 25294018
Alignment:
| Q |
144 |
aatgactatatgtttaagattttgtaaacaagtcaagcctttcggaagacaactcagtttattgcaatattttattttcaatatttcgagnnnnnnnagg |
243 |
Q |
| |
|
||||| || |||| ||||||||||||| |||| ||| ||| ||||||| ||||||||||| ||||||||||||| || ||||| || | | |
|
|
| T |
25294262 |
aatgattagatgtctaagattttgtaagcaagccaaatgttttggaagaccactcagtttatcataatattttatttttaagatttccagtatttttaag |
25294163 |
T |
|
| Q |
244 |
ttgtaaattgaatcaggcaacttttctatgttaagataacaaatttccaaataccttaaatgaattaaactacctagtaatggctctcggataaaggtta |
343 |
Q |
| |
|
||||||||||| |||| |||| ||| ||||| |||| || ||| | |||||||||||||||||||||| || |||| | |||| || ||||||||| | |
|
|
| T |
25294162 |
ttgtaaattgagtcagacaacatttttatgtcaagagaataaagtgccaaataccttaaatgaattaagcttcctattgatggtacttggataaaggatg |
25294063 |
T |
|
| Q |
344 |
tgcataaaacccgaagagaaaggtttgttgggaagtaatcatgtt |
388 |
Q |
| |
|
|||||||||| |||||| || ||||||||| ||||| |||||||| |
|
|
| T |
25294062 |
tgcataaaactcgaagacaacggtttgttgagaagtgatcatgtt |
25294018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 565 - 602
Target Start/End: Original strand, 8187165 - 8187202
Alignment:
| Q |
565 |
gattgagcaagatcatggacaagatcatgcatcttgaa |
602 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8187165 |
gattgagcaagatcatgtacaagatcatgcatcttgaa |
8187202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 592
Target Start/End: Complemental strand, 25293862 - 25293834
Alignment:
| Q |
564 |
tgattgagcaagatcatggacaagatcat |
592 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25293862 |
tgattgagcaagatcatggacaagatcat |
25293834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University