View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13956_low_2 (Length: 559)
Name: NF13956_low_2
Description: NF13956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13956_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 17 - 546
Target Start/End: Original strand, 40113623 - 40114152
Alignment:
| Q |
17 |
tttagagcatcatgccatgcacgaggtgcttgccgaagaccatagatagctttatgaagcttgcaaacatgattcagatactgtttatcttttagtcccg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
40113623 |
tttagagcatcatgccatgcacgaggtgcttgccgaagaccatagatagctttatgaagcttgcaaacatgattcggatactgtttatcttttagtcctg |
40113722 |
T |
|
| Q |
117 |
gaggttgactcatgtaaacatcttctttgagtaatccttgaaggaacgcattgttaacatcaagttggtgcagacgccaccctttccccaatgctatggt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40113723 |
gaggttgactcatgtaaacatcttctttgagtaatccttgaaggaacgcattgttaacatcaagttggtgcagacgccaccctttccccaatgctatggt |
40113822 |
T |
|
| Q |
217 |
gagaactagttttattgtttgaggccgaaccaccggagcaaaagtctctttgaagtcaacacctggacattgagtgaaacccttagccacaagacgtgct |
316 |
Q |
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| T |
40113823 |
gagaactagttttattgtttgaggccgaaccaccggagcaaaagtctatttgaagtcaacacccggacattgagtgaaacccttagccacaagacgtgct |
40113922 |
T |
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| Q |
317 |
ttgtatctagaaacagagccatcagagtttcttttgatgcgaaataaccatttgcaatcaacaatgttttgatgtgatggtggtggcccaagtgtccatg |
416 |
Q |
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| T |
40113923 |
ttgtatctagaaatagagccatcagagtttcttttgatgcgaaataaccatttgcaatcaacaatgttttgatgtgatggtggtggcacaagtgtccatg |
40114022 |
T |
|
| Q |
417 |
tgccatttcgaattaaggcatcaaactcctcagaaatagcttgtctccaatgggaatagttcatggctggtctgatattagatggttcaaggtgctccgt |
516 |
Q |
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| T |
40114023 |
tgccatttcgaattaaggcatcaaactcctcagaaatagcttgtctccaatgggaatattttatggcttgtcggatattagatggttcaaggttctcagg |
40114122 |
T |
|
| Q |
517 |
taatggatgagcagatgcatggtaaagttt |
546 |
Q |
| |
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| T |
40114123 |
taatggatgaacagatgcatggtaaagttt |
40114152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 468
Target Start/End: Original strand, 9005633 - 9005889
Alignment:
| Q |
212 |
atggtgagaactagttttattgtttgaggccgaaccaccggagcaaaagtctctttgaagtcaacacctggacattgagtgaaacccttagccacaagac |
311 |
Q |
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|||||||||| ||||| |||||||| || |||| || || ||||| |||||||| || || | ||||||||||| ||| | || || || || |||| |
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| T |
9005633 |
atggtgagaatgagtttaattgtttgtggacgaataacaggtgcaaatgtctctttaaaatctattcctggacattgtgtgtatccttttgcaactagac |
9005732 |
T |
|
| Q |
312 |
gtgctttgtatctagaaacagagccatcagagtttcttttgatgcgaaataaccatttgcaatcaacaatgttttgatgtgatggtggtggcccaagtgt |
411 |
Q |
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| T |
9005733 |
gagctttgtatctagagatagtgccatctggatttctttttatacgaaacaaccatttacattcaacaatgttgtggccagaaggtggtggaactagagt |
9005832 |
T |
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| Q |
412 |
ccatgtgccatttcgaattaaggcatcaaactcctcagaaatagcttgtctccaatg |
468 |
Q |
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| T |
9005833 |
ccaggtaccattgcgtattaacgcatcaaattcttctgaaatggcttgcctccaatg |
9005889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 24 - 498
Target Start/End: Original strand, 654756 - 655223
Alignment:
| Q |
24 |
catcatgccatgcacgaggtgcttgccgaagaccatagatagctttatgaagcttgcaaacatgattcagatactgtttatcttttagtcccggaggttg |
123 |
Q |
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|||||||||||||||||||||||| | ||||||||| || | ||| ||||| ||||| |||||||| |||| ||||||||| | ||||| ||||| || |
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| T |
654756 |
catcatgccatgcacgaggtgcttatctaagaccataaattgatttgtgaagtttgcacacatgatttggatattgtttatctctgagtcctggaggctg |
654855 |
T |
|
| Q |
124 |
actcatgtaaacatcttctttgagtaatccttgaaggaacgcattgttaacatcaagttggtgcagacgccaccctttccccaatgctatggtgagaact |
223 |
Q |
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| |||||||||| ||||| |||||| || ||||||| || ||| |||| || || | ||| |||| | || | ||||| ||||| | || ||||||| | |
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| T |
654856 |
agtcatgtaaacttcttccttgagtgatgcttgaagaaatgcactgtttacgtctaattgatgcatatgctatccttttcccaagacaatagtgagaatt |
654955 |
T |
|
| Q |
224 |
agttttattgtttgaggccgaaccaccggagcaaaagtctctttgaagtcaacacctggacattgagtgaaacccttagccacaagacgtgctttgtatc |
323 |
Q |
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| T |
654956 |
agtttgatggattgaggccgaacaactggtgc-aaggtttctttgaaatctaccactgggcattgagtaaagcctttagccactaatcgtgctttgtatc |
655054 |
T |
|
| Q |
324 |
tagaaacagagccatcagagtttcttttgatgcgaaataaccatttgcaatcaacaatgttttgatgtgatggtggtggcccaagtgtccatgtgccatt |
423 |
Q |
| |
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||| || |||||| ||||| ||||| |||| |||||||| || || || |||| |||||||||| |||||| |||||| ||||| |
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| T |
655055 |
tagctgtagtaccatcatgatttctcttgatatgaaacaaccattttca------gatattatgattcactggtggtggcacaagtgaccatgtaccatt |
655148 |
T |
|
| Q |
424 |
tcgaattaaggcatcaaactcctcagaaatagcttgtctccaatgggaatagttcatggctggtctgatattaga |
498 |
Q |
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|||||||||||||| | ||| || ||||| |||||||||||||| |||| | ||||||| |||||||| |||| |
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| T |
655149 |
tcgaattaaggcattgagctcttcggaaatggcttgtctccaatgagaatgttgcatggcttgtctgatactaga |
655223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 6406610 - 6406555
Alignment:
| Q |
17 |
tttagagcatcatgccatgcacgaggtgcttgccgaagaccatagatagctttatg |
72 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6406610 |
tttagagcatcatgccatgcacgaggtgcttgccgaagaccatagatagctttatg |
6406555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 45190095 - 45190030
Alignment:
| Q |
120 |
gttgactcatgtaaacatcttctttgagtaatccttgaaggaacgcattgttaacatcaagttggt |
185 |
Q |
| |
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| T |
45190095 |
gttgactcatgtaaacttgttctgtgagagatccttgaaggaaagcattgttaacatcaagttggt |
45190030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 372
Target Start/End: Original strand, 9036779 - 9036921
Alignment:
| Q |
230 |
attgtttgaggccgaaccaccggagcaaaagtctctttgaagtcaacacctggacattgagtgaaacccttagccacaagacgtgctttgtatctagaaa |
329 |
Q |
| |
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|||||||| |||| ||||||||| ||||| || || | |||||| || || ||| |||||| || || || || ||||| || |||||||| | || || |
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| T |
9036779 |
attgtttggggcctaaccaccggtgcaaaggtttcatggaagtctactccatgacgttgagtaaagccttttgcaacaaggcgagctttgtagcgagcaa |
9036878 |
T |
|
| Q |
330 |
cagagccatcagagtttcttttgatgcgaaataaccatttgca |
372 |
Q |
| |
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| T |
9036879 |
gagagccatcagcttgtcttttgatgcgaaacaaccatttgca |
9036921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 9036701 - 9036737
Alignment:
| Q |
152 |
ccttgaaggaacgcattgttaacatcaagttggtgca |
188 |
Q |
| |
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||||||||||| |||||||||||||||||||| |||| |
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| T |
9036701 |
ccttgaaggaaggcattgttaacatcaagttgatgca |
9036737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 326
Target Start/End: Complemental strand, 39486151 - 39486111
Alignment:
| Q |
286 |
ttgagtgaaacccttagccacaagacgtgctttgtatctag |
326 |
Q |
| |
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|||||||||||||||||||||||| | ||||||||| |||| |
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| T |
39486151 |
ttgagtgaaacccttagccacaagtcttgctttgtacctag |
39486111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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