View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13957_low_1 (Length: 458)
Name: NF13957_low_1
Description: NF13957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13957_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 9 - 359
Target Start/End: Original strand, 33062277 - 33062627
Alignment:
| Q |
9 |
gataatactagtatgtagaagtccaaatccaacatgtaggaacaacaaacaactaagcaagaatatacaatatttcaccatcaaaccatggatgacaaca |
108 |
Q |
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| T |
33062277 |
gataatactagtatgtagaagtccaaatccaacatgtaggaacaacaaacaactaagcaagaatatacaatatttcaccatcaaaccatggatgacaaca |
33062376 |
T |
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| Q |
109 |
tccacatgccaagttgagttaaatttgtatctattgtataattctttttgtgtataatatgaataatgttctaaaaatatgtttatatagataatgatgc |
208 |
Q |
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| T |
33062377 |
tccacatgtcaagttgagttaaatttgtatctagtgtatatatctttttgtgtataatatgaataatgttctaaaaatatgtttatatagataatgatgc |
33062476 |
T |
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| Q |
209 |
aagaggaagaaaattggagtcagagaaacccagagtgaatgggtatttcataaacaatatttcatatcaagaaaaattaatcagctcggtgacatcattt |
308 |
Q |
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| T |
33062477 |
aagaggaagaaaattggagtcagagaaacccagagtgaatgggtatttcataaacaatatttcatatcaagaaaaattaataagctcggtgacatcattt |
33062576 |
T |
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| Q |
309 |
tgcatctaatacattatatggctcaatcttggctaaaacatgtagtatttg |
359 |
Q |
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| T |
33062577 |
tgcatctaatacattatatggctcaatcttggctaaaacatgtagtatttg |
33062627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 33062717 - 33062785
Alignment:
| Q |
372 |
tataatttaggaactcaagttagtctaaaagatgagctcattgagctagacaaaaattgacatcattga |
440 |
Q |
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| T |
33062717 |
tataatttaggaactcaagttagtctaaaagatgagctcattgagctagacaaaaattgacatcattga |
33062785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 33081696 - 33081748
Alignment:
| Q |
23 |
gtagaagtccaaatccaacatgtaggaacaacaaacaactaagcaagaatata |
75 |
Q |
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| T |
33081696 |
gtagaagtccaaatccaacatgtaggaacaacaaacaactaagcaagaatata |
33081748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 307
Target Start/End: Original strand, 33081782 - 33081894
Alignment:
| Q |
195 |
atagataatgatgcaagaggaagaaaattggagtcagagaaacccagagtgaatgggtatttcataaacaata---tttcatatcaagaaaaattaatca |
291 |
Q |
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| T |
33081782 |
atagataataatgcaagaggaagagaatcggagtcaga--aagtcagagtaaatgg-tatttcataaacaatagtatttcatatcaagaaaaattaataa |
33081878 |
T |
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| Q |
292 |
gctcggtgacatcatt |
307 |
Q |
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| T |
33081879 |
gatcagtgacatcatt |
33081894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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