View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13957_low_2 (Length: 267)
Name: NF13957_low_2
Description: NF13957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13957_low_2 |
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| [»] chr4 (4 HSPs) |
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| [»] scaffold0115 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 76 - 267
Target Start/End: Complemental strand, 24613477 - 24613286
Alignment:
| Q |
76 |
tatgatttagcgtatatttgagcattaccaagcttaacctgaagctcactcgcttagtaccctaggacacagggctggaacgaggctaaggaccaaagct |
175 |
Q |
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| T |
24613477 |
tatgatttagcgtatatttgagcattaccaagcttaacctgaagctcactcgcttagtaccttaggacacagggctggaacgaggctaaggaccaaagct |
24613378 |
T |
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| Q |
176 |
gatgcaccaaaacataacacccaaattctgcagcatcttagcagctcttgcagcaacagaaactgaccaggctagtactgatacgccaaaac |
267 |
Q |
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| T |
24613377 |
gatgcaccaaaacataacacccaaattctgcagcatcttagcagctcttgcagcaacagaaactgaccaggctagtactgatacgccaaaac |
24613286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 76 - 251
Target Start/End: Complemental strand, 24620981 - 24620806
Alignment:
| Q |
76 |
tatgatttagcgtatatttgagcattaccaagcttaacctgaagctcactcgcttagtaccctaggacacagggctggaacgaggctaa-ggaccaaagc |
174 |
Q |
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| T |
24620981 |
tatgattaagcgtatatttgagcaataccaagcttaacctaaagcttactcgcttagtaccttaggacgcagggctggaacaaggctaagggaccaaaac |
24620882 |
T |
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| Q |
175 |
tgatgcaccaaaacataacacccaaattctgcagcatcttagcagctcttgcagcaacagaaactgaccaggctagt |
251 |
Q |
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| T |
24620881 |
tgatgcaccaaaacataac-cccaaattctgcagcatcttagcagctcttgcaacaatagacactaaccaggctagt |
24620806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 76 - 227
Target Start/End: Complemental strand, 24653096 - 24652946
Alignment:
| Q |
76 |
tatgatttagcgtatatttgagcattaccaagcttaacctgaagctcactcgcttagtaccctaggacacagggctggaacgaggctaaggaccaaagct |
175 |
Q |
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| T |
24653096 |
tatgattcaacgtatatttgagcattaccaagcttaacctgaagctcactcgcttagtatcttaggatgcatggctagaacgaggctaaggaccaaagct |
24652997 |
T |
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| Q |
176 |
gatgcaccaaaacataacacccaaattctgcagcatcttagcagctcttgca |
227 |
Q |
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| T |
24652996 |
gatgcgccaaatcataac-cccgaattctacaacatcttagcagctcttgca |
24652946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 2531261 - 2531201
Alignment:
| Q |
104 |
caagcttaacctgaagctcactcgcttagtaccctaggacacagggctggaacgaggctaa |
164 |
Q |
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| T |
2531261 |
caagcttaacctgaagctcacttgcttgacaccttaggacgcatggctggaacgaagctaa |
2531201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 38704 - 38764
Alignment:
| Q |
104 |
caagcttaacctgaagctcactcgcttagtaccctaggacacagggctggaacgaggctaa |
164 |
Q |
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| T |
38704 |
caagcttaacctgaagctcacttgcttgacaccttaggacacatggctagaacgaagctaa |
38764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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