View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13958_high_1 (Length: 279)
Name: NF13958_high_1
Description: NF13958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13958_high_1 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 125 - 279
Target Start/End: Original strand, 26544391 - 26544544
Alignment:
| Q |
125 |
ttttgaacatattttccaagattttttgacaatacaaaagttcgcaatgtaattcaaaaccatgacggatccctcgacatgatttagcttaccttagtct |
224 |
Q |
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| T |
26544391 |
ttttgaccatattttccaagatttt-tgacaatacaaaagttcgcaatgtaattgaaaaccatgacggatccctcgacatgatttagcttaccttagtct |
26544489 |
T |
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| Q |
225 |
cagtggcatcatttgatgtaagaacagcagacacaacaccaggtttggccttctt |
279 |
Q |
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| T |
26544490 |
cagtggcatcatttgatgtaagaacagcagacacaacaccaggtttggccttctt |
26544544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 26544250 - 26544360
Alignment:
| Q |
17 |
acgaaggatcacagttacactacaaccgcaataaaaaatggtagaaaatggatcccatggttttaaaccgtggtccacaaccaaaattgtgtccgcaata |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
26544250 |
acgaaggatcacagttacactacaaccgcaataaaaaatggtagaaaatggatcccatggttttaaaccgtggtccacagccaaaattgtgtccgcagta |
26544349 |
T |
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| Q |
117 |
taaaggatttt |
127 |
Q |
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| T |
26544350 |
taaaggatttt |
26544360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 173 - 279
Target Start/End: Original strand, 42990 - 43096
Alignment:
| Q |
173 |
gtaattcaaaaccatgacggatccctcgacatgatttagcttaccttagtctcagtggcatcatttgatgtaagaacagcagacacaacaccaggtttgg |
272 |
Q |
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||||||||||| |||||| ||||| | |||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
42990 |
gtaattcaaaagcatgacagatccgtaaacatgattcagcttatcttagtctcagtggcatcatttgatgtaagaacagcagagacaacaccatatttgg |
43089 |
T |
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| Q |
273 |
ccttctt |
279 |
Q |
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||||||| |
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| T |
43090 |
ccttctt |
43096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 25283870 - 25283956
Alignment:
| Q |
174 |
taattcaaaaccatgacggatccctcgacatgatttagcttaccttagtctcagtggcatcatttgatgtaagaacagcagacacaa |
260 |
Q |
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||||||||||||||||||||||||| |||||||| | ||||||||| |||||| |||| ||||||||||||||| ||||||||||| |
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| T |
25283870 |
taattcaaaaccatgacggatccctaaacatgattaaacttaccttaatctcagcggcaacatttgatgtaagaatagcagacacaa |
25283956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 3195 - 3149
Alignment:
| Q |
174 |
taattcaaaaccatgacggatccctcgacatgatttagcttacctta |
220 |
Q |
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||||||||||||||||||||||||| ||||| || ||||||||||| |
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| T |
3195 |
taattcaaaaccatgacggatccctaaacatggttaagcttacctta |
3149 |
T |
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