View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13959_high_1 (Length: 299)
Name: NF13959_high_1
Description: NF13959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13959_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 47524225 - 47523960
Alignment:
| Q |
18 |
gtaatataactaccatcaagcaatacaaggccatataggtctattcagggatttaaggcacatgatagtgttctgaaattctaagaaagtattatcaaca |
117 |
Q |
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| T |
47524225 |
gtaatataactaccatcaagcaatacaaggccatacaggtctattcagggatttatggcacatgatagtgttctgaaattctaagaaagttttatcaaca |
47524126 |
T |
|
| Q |
118 |
aattgacacttgttttctccggttatcctagcaaaaccaaacgcttttgtccacgtgtctatagcatccttggaggaatgcaaaaccaagcttccaactc |
217 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47524125 |
aattgacacttgtcttctccggttatcctagcaaaaccaaacgcttttgtccacgtgtctatagcatcctcggaggaatgcaaaaccaagcttccaactc |
47524026 |
T |
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| Q |
218 |
ctaagcgtgtcaactgtttctcaagctcgtgcatcaacaaacgacacattccttgtcttcgatatt |
283 |
Q |
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| T |
47524025 |
ctaagcgtgtcaactgttcctcaagctcgtgcatcaacaaacgacacattccttgtcttcgatatt |
47523960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 44 - 286
Target Start/End: Complemental strand, 47529571 - 47529329
Alignment:
| Q |
44 |
aaggccatataggtctattcagggatttaaggcacatgatagtgttctgaaattctaagaaagtattatcaacaaattgacacttgttttctccggttat |
143 |
Q |
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| T |
47529571 |
aaggccatttaggtttcttcagtggtttaaggcacatgacagtgtcctgaaattctaagaaagtaatatcaacaaattgacgcttgtctttacctgtcat |
47529472 |
T |
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| Q |
144 |
cctagcaaaaccaaacgcttttgtccacgtgtctatagcatccttggaggaatgcaaaaccaagcttccaactcctaagcgtgtcaactgtttctcaagc |
243 |
Q |
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| T |
47529471 |
cctctcaaaaccaaaagattttgtccatgtgtctatagcatcctcggatgaatgcaaaaccatgctttctactcctaagcgagtcaattgtttctcaagt |
47529372 |
T |
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| Q |
244 |
tcgtgcatcaacaaacgacacattccttgtcttcgatattctt |
286 |
Q |
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| T |
47529371 |
tcatccatcaacaaacgacacattccttgtcctcgatgttctt |
47529329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 70 - 283
Target Start/End: Complemental strand, 47551222 - 47551009
Alignment:
| Q |
70 |
ttaaggcacatgatagtgttctgaaattctaagaaagtattatcaacaaattgacacttgttttctccggttatcctagcaaaaccaaacgcttttgtcc |
169 |
Q |
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| T |
47551222 |
ttaagacacatgatagtgtcctgaaattcaaagaaagtataatgaacaaatttacacttgtcttcattcgtcatctcaacaaaatgaaatgattttttcc |
47551123 |
T |
|
| Q |
170 |
acgtgtctatagcatccttggaggaatgcaaaaccaagcttccaactcctaagcgtgtcaactgtttctcaagctcgtgcatcaacaaacgacacattcc |
269 |
Q |
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| T |
47551122 |
aagtgtctatagcatccttggaggaatgcaaaaccaagctcccaactcctaagttaatcaattgttcctcaagccccttcatcaacaaacaacacattcc |
47551023 |
T |
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| Q |
270 |
ttgtcttcgatatt |
283 |
Q |
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|||||||||||||| |
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| T |
47551022 |
ttgtcttcgatatt |
47551009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 31 - 280
Target Start/End: Original strand, 44870214 - 44870463
Alignment:
| Q |
31 |
catcaagcaatacaaggccatataggtctattcagggatttaaggcacatgatagtgttctgaaattctaagaaagtattatcaacaaattgacacttgt |
130 |
Q |
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| T |
44870214 |
catcaagcaatgcgaggccatataggtatattcagtggtttaaggcacatgatagagttgtgaaattctaagaaagtattatcaataagtttacacttgt |
44870313 |
T |
|
| Q |
131 |
tttctccggttatcctagcaaaaccaaacgcttttgtccacgtgtctatagcatccttggaggaatgcaaaaccaagcttccaactcctaagcgtgtcaa |
230 |
Q |
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||| | || ||||||||||||||||||| ||||||||| |||| ||||||||| | || |||||||||||||| ||||| ||||||||||| ||||| |
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| T |
44870314 |
cttcactcgtcatcctagcaaaaccaaacgattttgtccaagtgtttatagcatcttcagatgaatgcaaaaccaatcttcctactcctaagcgagtcaa |
44870413 |
T |
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| Q |
231 |
ctgtttctcaagctcgtgcatcaacaaacgacacattccttgtcttcgat |
280 |
Q |
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||||| ||||||||| | |||||||||||||||||||||| ||| ||||| |
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| T |
44870414 |
ctgttcctcaagctcatccatcaacaaacgacacattcctcgtcctcgat |
44870463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 283
Target Start/End: Original strand, 9819367 - 9819619
Alignment:
| Q |
31 |
catcaagcaatacaaggccatataggtctattcagggatttaaggcacatgatagtgttctgaaattctaagaaagtattatcaacaaattgacacttgt |
130 |
Q |
| |
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||||||||||| ||||||||| ||||| | ||||| | ||| || |||||| || | |||||||||||||| ||||||| ||||| ||| |||||||| | |
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| T |
9819367 |
catcaagcaatgcaaggccatttaggtgttttcagtgctttgagacacatggtactattctgaaattctaaaaaagtatgatcaataaactgacacttat |
9819466 |
T |
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| Q |
131 |
tttctccggttatcctagcaaaaccaaacgcttttgtccacgtgtctatagcatccttggaggaatgcaaaaccaagcttccaactcctaagcgtgtcaa |
230 |
Q |
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| T |
9819467 |
ctttactggccatcctggcaaaaccaaatgatcttgtccaagtgttcatagcatcctctgaggaatgcagaagtaatttctcaactcctaagcgagttaa |
9819566 |
T |
|
| Q |
231 |
ctgtttctcaagctcgtgcatcaacaaacgacacattccttgtcttcgatatt |
283 |
Q |
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| T |
9819567 |
ctgtttctcaatctcatccatcaacaaatgacacattccttgtcgtcgatatt |
9819619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 31 - 283
Target Start/End: Complemental strand, 9854613 - 9854361
Alignment:
| Q |
31 |
catcaagcaatacaaggccatataggtctattcagggatttaaggcacatgatagtgttctgaaattctaagaaagtattatcaacaaattgacacttgt |
130 |
Q |
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| T |
9854613 |
catcaagcaatgcaagaccatataggtgttttcagtgctttgagacacatggtactattctgaaattctaaaaaagtatgatcaataaactgacacttat |
9854514 |
T |
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| Q |
131 |
tttctccggttatcctagcaaaaccaaacgcttttgtccacgtgtctatagcatccttggaggaatgcaaaaccaagcttccaactcctaagcgtgtcaa |
230 |
Q |
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| T |
9854513 |
ctttactggccatcctggcaaaaccaaatgattttgtccaaatgttcatagcatcctctgaggaatgcagaagtaatttctcaactcctaagcgagttaa |
9854414 |
T |
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| Q |
231 |
ctgtttctcaagctcgtgcatcaacaaacgacacattccttgtcttcgatatt |
283 |
Q |
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||||||||||| ||| | |||||||||| |||| |||||||||| |||||||| |
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| T |
9854413 |
ctgtttctcaatctcatccatcaacaaatgacagattccttgtcgtcgatatt |
9854361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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