View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13959_low_4 (Length: 249)
Name: NF13959_low_4
Description: NF13959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13959_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 27523681 - 27523906
Alignment:
| Q |
1 |
gattgctaatttccttcttttttacgggatgttattccttaattcattcaaatatttgtttatgttgaaaattctaccttcaatcgtggcttcctaattg |
100 |
Q |
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| T |
27523681 |
gattgctaatttccttcttttttacgggatgttattccttaattctttcaaatatttgtttatgttgaaaattctaccttcaatcgtggcttcctaattg |
27523780 |
T |
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| Q |
101 |
cggcatttggattgttcagaatctctatttctctattatttctacctcctgtcatggtgaaaagaacttggtgatgacaacttataatttgtaggcataa |
200 |
Q |
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| T |
27523781 |
cggcatttggattgttcagaatctctatttctctattatttctacctcctgtcatggtgaaaagaacttggtgataacaacttataatttgtaggcataa |
27523880 |
T |
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| Q |
201 |
aaataatgaatttcaattgcaaatgt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
27523881 |
aaataatgaatttcaattgcaaatgt |
27523906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 12858276 - 12858395
Alignment:
| Q |
2 |
attgctaatttccttcttttttacgggatgttattccttaattcattcaaatatttgtttatgttgaaaattctaccttcaatcgtggcttcctaattgc |
101 |
Q |
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||||||||||||| |||||| || |||||||||| |||||||| |||||||||||||||||||||||||||||||| || || ||||| |||||||||| |
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| T |
12858276 |
attgctaatttccatcttttata--ggatgttatttcttaattctttcaaatatttgtttatgttgaaaattctaccatc-attgtggcctcctaattgc |
12858372 |
T |
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| Q |
102 |
ggcatttggattgttcagaatct |
124 |
Q |
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| T |
12858373 |
gacatttggattgttcagaatct |
12858395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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