View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13959_low_5 (Length: 244)

Name: NF13959_low_5
Description: NF13959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13959_low_5
NF13959_low_5
[»] chr4 (3 HSPs)
chr4 (170-228)||(45175389-45175447)
chr4 (68-101)||(45175456-45175489)
chr4 (48-85)||(15078419-15078456)
[»] chr2 (2 HSPs)
chr2 (133-224)||(17854342-17854431)
chr2 (48-85)||(21125150-21125187)
[»] scaffold0403 (1 HSPs)
scaffold0403 (48-85)||(3606-3643)
[»] chr8 (4 HSPs)
chr8 (48-85)||(23655777-23655814)
chr8 (48-85)||(20009813-20009850)
chr8 (48-85)||(21841267-21841304)
chr8 (48-85)||(22371790-22371827)
[»] scaffold0298 (1 HSPs)
scaffold0298 (46-85)||(20798-20837)
[»] scaffold0261 (2 HSPs)
scaffold0261 (46-85)||(14649-14688)
scaffold0261 (46-85)||(22828-22867)
[»] chr7 (1 HSPs)
chr7 (46-85)||(15102039-15102078)
[»] chr3 (2 HSPs)
chr3 (46-85)||(11303450-11303489)
chr3 (48-85)||(16827882-16827919)
[»] scaffold0165 (1 HSPs)
scaffold0165 (48-85)||(5245-5282)
[»] scaffold0149 (2 HSPs)
scaffold0149 (48-85)||(6690-6727)
scaffold0149 (48-85)||(11121-11158)
[»] scaffold0108 (1 HSPs)
scaffold0108 (48-85)||(47939-47976)
[»] scaffold0102 (1 HSPs)
scaffold0102 (48-85)||(40553-40590)
[»] scaffold0026 (1 HSPs)
scaffold0026 (48-85)||(28872-28909)
[»] chr5 (1 HSPs)
chr5 (48-85)||(21890392-21890429)


Alignment Details
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 45175447 - 45175389
Alignment:
Q  170 tgattgtgtacatgttgacgaaatcagctcactttataccactgcaaactaactataat 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45175447 tgattgtgtacatgttgacgaaatcagctcactttataccactgcaaactaactataat 45175389  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 101
Target Start/End: Complemental strand, 45175489 - 45175456
Alignment:
Q  68 ggacaacatttccatggacttcgttggtgctacc 101  Q
    ||||||||||||||||||||||||||||||||||    
T  45175489 ggacaacatttccatggacttcgttggtgctacc 45175456  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 15078456 - 15078419
Alignment:
Q  48 gatgtgccgtagtggaagtgggacaacatttccatgga 85  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  15078456 gatgtgccagagtggaagtgggacaacatttccatgga 15078419  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 17854431 - 17854342
Alignment:
Q  133 ctaccaaagactcagagaaagtttgactctatatgggtgattgtgtacatgttgacgaaatcagctcactttataccactgcaaactaacta 224  Q
    |||||||| |||||||| |||||||||||||||||| |||| ||| ||| |||||||  ||||||||||||||||||||| | |||||||||    
T  17854431 ctaccaaaaactcagaggaagtttgactctatatggatgatcgtggacaagttgacg--atcagctcactttataccactacgaactaacta 17854342  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 21125150 - 21125187
Alignment:
Q  48 gatgtgccgtagtggaagtgggacaacatttccatgga 85  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  21125150 gatgtgccagagtggaagtgggacaacatttccatgga 21125187  T

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Target: scaffold0403 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0403
Description:

Target: scaffold0403; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 3643 - 3606
Alignment:
Q  48 gatgtgccgtagtggaagtgggacaacatttccatgga 85  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  3643 gatgtgccggagtggaagtgggacaacatttccatgga 3606  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 23655814 - 23655777
Alignment:
Q  48 gatgtgccgtagtggaagtgggacaacatttccatgga 85  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  23655814 gatgtgccggagtggaagtgggacaacatttccatgga 23655777  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 20009813 - 20009850
Alignment:
Q  48 gatgtgccgtagtggaagtgggacaacatttccatgga 85  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  20009813 gatgtgccagagtggaagtgggacaacatttccatgga 20009850  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 21841304 - 21841267
Alignment:
Q  48 gatgtgccgtagtggaagtgggacaacatttccatgga 85  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  21841304 gatgtgccagagtggaagtgggacaacatttccatgga 21841267  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 22371827 - 22371790
Alignment:
Q  48 gatgtgccgtagtggaagtgggacaacatttccatgga 85  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  22371827 gatgtgcctgagtggaagtgggacaacatttccatgga 22371790  T

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Target: scaffold0298 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0298
Description:

Target: scaffold0298; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 20837 - 20798
Alignment:
Q  46 tggatgtgccgtagtggaagtgggacaacatttccatgga 85  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  20837 tggatgtgccggagtggaagtgggacaacatttctatgga 20798  T

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Target: scaffold0261 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 14649 - 14688
Alignment:
Q  46 tggatgtgccgtagtggaagtgggacaacatttccatgga 85  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  14649 tggatgtgccggagtggaagtgggacaacatttctatgga 14688  T

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Target: scaffold0261; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 22828 - 22867
Alignment:
Q  46 tggatgtgccgtagtggaagtgggacaacatttccatgga 85  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  22828 tggatgtgccggagtggaagtgggacaacatttctatgga 22867  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 15102039 - 15102078
Alignment:
Q  46 tggatgtgccgtagtggaagtgggacaacatttccatgga 85  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  15102039 tggatgtgccggagtggaagtgggacaacatttctatgga 15102078  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 11303450 - 11303489
Alignment:
Q  46 tggatgtgccgtagtggaagtgggacaacatttccatgga 85  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  11303450 tggatgtgccggagtggaagtgggacaacatttctatgga 11303489  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 16827882 - 16827919
Alignment:
Q  48 gatgtgccgtagtggaagtgggacaacatttccatgga 85  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  16827882 gatgtgccagagtggaagtgggacaacatttccatgga 16827919  T

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Target: scaffold0165 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 5282 - 5245
Alignment:
Q  48 gatgtgccgtagtggaagtgggacaacatttccatgga 85  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  5282 gatgtgccatagtggaagtgggacaacatctccatgga 5245  T

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Target: scaffold0149 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 6690 - 6727
Alignment:
Q  48 gatgtgccgtagtggaagtgggacaacatttccatgga 85  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  6690 gatgtgccggagtggaagtgggacagcatttccatgga 6727  T

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Target: scaffold0149; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 11121 - 11158
Alignment:
Q  48 gatgtgccgtagtggaagtgggacaacatttccatgga 85  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  11121 gatgtgccggagtggaagtgggacagcatttccatgga 11158  T

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Target: scaffold0108 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 47976 - 47939
Alignment:
Q  48 gatgtgccgtagtggaagtgggacaacatttccatgga 85  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  47976 gatgtgccagagtggaagtgggacaacatttccatgga 47939  T

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Target: scaffold0102 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 40590 - 40553
Alignment:
Q  48 gatgtgccgtagtggaagtgggacaacatttccatgga 85  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  40590 gatgtgccagagtggaagtgggacaacatttccatgga 40553  T

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Target: scaffold0026 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 28909 - 28872
Alignment:
Q  48 gatgtgccgtagtggaagtgggacaacatttccatgga 85  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  28909 gatgtgccagagtggaagtgggacaacatttccatgga 28872  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 21890392 - 21890429
Alignment:
Q  48 gatgtgccgtagtggaagtgggacaacatttccatgga 85  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  21890392 gatgtgccagagtggaagtgggacaacatttccatgga 21890429  T

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