View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1395_high_10 (Length: 279)
Name: NF1395_high_10
Description: NF1395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1395_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 35482721 - 35482559
Alignment:
| Q |
11 |
cacagatactactccataaccaattcttcaatctacttcccaagatgctttcaccatgtatcagttctgtaaacactctaaatctaaaatttcttaatat |
110 |
Q |
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| T |
35482721 |
cacaaatactacaccataaccaattcttcaatctacttcccaagatgctttcaccatgtatcagttctgtaaacactctaaatctaaaatttcttaatat |
35482622 |
T |
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| Q |
111 |
cccaccctcttcctccaatctcaaccattctttttaccgctttaaatcaatctcagccgtcct |
173 |
Q |
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| T |
35482621 |
cccaccctcttcctccaatctcaaccgttctttttaccgctttaaatcaatctcagccgtcct |
35482559 |
T |
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