View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1395_high_18 (Length: 247)
Name: NF1395_high_18
Description: NF1395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1395_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 6113305 - 6113528
Alignment:
| Q |
1 |
tggtctttcttttaattcagtgggtggttcaccatattatatgtgcaattatattattgttaagaaatcttttgattacttgaagttacaataatccatc |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6113305 |
tggtctttcttttaattcagtgggtggtttaccatattatatgtgcaattctattattgttaagaaatcttctgattacttgaagttacaataatccatc |
6113404 |
T |
|
| Q |
101 |
gccacaatctttcacccactgtcccttctagcgaaatcactggagccaccagtttctgtcctctgccatcaaaccactggaaatgtgcggtactaccagc |
200 |
Q |
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|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6113405 |
gccacaatctttcacccaccgtcccttctagcgaaatcactggagccaccagtttctgtattctgccatcaaaccactggaaatgtgcggtactaccagc |
6113504 |
T |
|
| Q |
201 |
tcgagggagttcatcgcccaactg |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
6113505 |
tcgagggagttcatcgcccaactg |
6113528 |
T |
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