View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1395_high_2 (Length: 445)
Name: NF1395_high_2
Description: NF1395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1395_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 142 - 369
Target Start/End: Original strand, 27303477 - 27303700
Alignment:
| Q |
142 |
tccttaatataagacatttaacatatttaaagtactgttagaaaatgtattatatttctctct-ataatatcaacaattgtaaggataaaatatgtaaaa |
240 |
Q |
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| T |
27303477 |
tccttaatataagacatttaacatatttaaagtactgttagaaaatgtattatatttctctcttacaacatcaacaattgtaaggataaaatatgtaaaa |
27303576 |
T |
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| Q |
241 |
ctagctaacacaatattttgagaaatttattactaaaattagttttttaattaatgtgatttttcatttgtaagttgatatttcatttcttacaaaattt |
340 |
Q |
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| T |
27303577 |
ctagctaacacaatattttgagaattttattactaaaattagttttttaataaatgtgatttttcatttg-----tgatatttcattgcttacaaaattt |
27303671 |
T |
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| Q |
341 |
cattatgtgtttatttcaagttatcattg |
369 |
Q |
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| T |
27303672 |
cattatgtgtttatttcaagttatcattg |
27303700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 27303324 - 27303406
Alignment:
| Q |
22 |
ctatgttacattaatgacatattaacggtttgtattaaatgcttcttattaaatttattcgtcaactcactttactattaata |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27303324 |
ctatgttacattaatgacatattaacggtttgtattaaatgcttcttattaaatttattcgtcaactcactttactattaata |
27303406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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