View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1395_low_1 (Length: 526)

Name: NF1395_low_1
Description: NF1395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1395_low_1
NF1395_low_1
[»] chr2 (5 HSPs)
chr2 (72-509)||(7873281-7873704)
chr2 (71-174)||(14107035-14107138)
chr2 (71-139)||(37771304-37771372)
chr2 (71-198)||(7695340-7695467)
chr2 (74-121)||(42049031-42049079)
[»] scaffold0063 (1 HSPs)
scaffold0063 (71-226)||(57392-57547)
[»] chr4 (2 HSPs)
chr4 (71-238)||(38640125-38640291)
chr4 (72-135)||(53814151-53814214)
[»] scaffold0050 (1 HSPs)
scaffold0050 (69-197)||(36143-36271)
[»] chr3 (7 HSPs)
chr3 (82-233)||(14755849-14756000)
chr3 (72-139)||(40024136-40024203)
chr3 (72-180)||(25647154-25647262)
chr3 (69-155)||(14193434-14193520)
chr3 (70-152)||(47235045-47235128)
chr3 (69-252)||(37122720-37122903)
chr3 (85-139)||(24282865-24282919)
[»] chr6 (2 HSPs)
chr6 (71-209)||(20702437-20702575)
chr6 (72-174)||(31303523-31303627)
[»] chr5 (3 HSPs)
chr5 (76-238)||(13954916-13955078)
chr5 (82-155)||(7392688-7392761)
chr5 (72-157)||(12566633-12566718)
[»] chr1 (6 HSPs)
chr1 (70-174)||(16146849-16146952)
chr1 (76-156)||(7857022-7857102)
chr1 (77-169)||(52277913-52278004)
chr1 (76-139)||(24658295-24658358)
chr1 (73-115)||(46815062-46815104)
chr1 (82-114)||(4391343-4391375)
[»] chr7 (4 HSPs)
chr7 (72-139)||(34389405-34389472)
chr7 (77-174)||(3477727-3477824)
chr7 (74-139)||(42533938-42534003)
chr7 (73-207)||(7191105-7191239)
[»] chr8 (2 HSPs)
chr8 (76-247)||(10249038-10249209)
chr8 (82-121)||(1578868-1578907)


Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 72 - 509
Target Start/End: Complemental strand, 7873704 - 7873281
Alignment:
Q  72 gaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgcag 171  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||     
T  7873704 gaacaaccacaaccaccacgatccttatgacgacaaaccatccgaaagttcgttgaagaaggattaatcgtaaatgaaagagaggttgccacacctacaa 7873605  T
Q  172 ccgtcggaagtagatcacacatatcgatgccacacatcgcaccctccacatcacatgtccgttaccatcactgacctccccaaatcacccaacaacaacc 271  Q
    |||| ||||||||||||||||||||| ||||||||||| |||              ||||||||||||||||||||||||| ||||||||||||||||||    
T  7873604 ccgttggaagtagatcacacatatcggtgccacacatcacac--------------gtccgttaccatcactgacctccccgaatcacccaacaacaacc 7873519  T
Q  272 tacaccttccgccgccggaaaccagaccacacatgacaccaccttcactacacaaccagcacggagaaaccctccaacacataacaccacctccgcctca 371  Q
    |||||||||||| |||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7873518 tacaccttccgctgccggaaaccagaccacacacggcaccaccttcactgcacaaccagcacggagaaaccctccaacacataacaccacctccgcctca 7873419  T
Q  372 caaaaaggacaaacaacctagtcaaaacccaaccgctctagttgccaaaagcgaggccgcacacgcagcagcagagtgcggactgctgcccacgcaacaa 471  Q
    ||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||    
T  7873418 caaaaagcacaaaccacctagtcaaaacccaaccgctccagttgccaaaagcgaggtcgcacacgcagcagcagagtgcggactgctgcccacacagcaa 7873319  T
Q  472 caaccaccgcaaggccacaccaagacaaaccagcagca 509  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  7873318 caaccaccgtaaggccacaccaagacaaaccagcagca 7873281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 71 - 174
Target Start/End: Original strand, 14107035 - 14107138
Alignment:
Q  71 cgaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgca 170  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||  |||||||||||| | ||||||| || |||||||||||||   |||||| ||||    
T  14107035 cgaacaaccacaatcaccatgatccttacgacgacaaacgatccgggagttcgttgaaggaagattaatcgtgaatgaaagagatgccaccacacttgca 14107134  T
Q  171 gccg 174  Q
    ||||    
T  14107135 gccg 14107138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 37771304 - 37771372
Alignment:
Q  71 cgaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaat 139  Q
    ||||||||||||  ||||||||| ||||| |||||||||||||||  |||||||||||  |||||||||    
T  37771304 cgaacaaccacacacaccacgattcttacaacgacaaacgatccgggagttcgttgaaagaggattaat 37771372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 71 - 198
Target Start/End: Complemental strand, 7695467 - 7695340
Alignment:
Q  71 cgaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgca 170  Q
    |||||||| |||||||||| |||||||| || || ||||||||    | ||| |||||| | ||||||| || |||||||||||||| ||  ||| ||||    
T  7695467 cgaacaactacaaccaccatgatccttatgaagagaaacgatctaggatttctttgaagcatgattaatcgtgaatgaaagagatgtcgctccacgtgca 7695368  T
Q  171 gccgtcggaagtagatcacacatatcga 198  Q
    |  | ||||| |||||||||||||||||    
T  7695367 gttgccggaaatagatcacacatatcga 7695340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 121
Target Start/End: Original strand, 42049031 - 42049079
Alignment:
Q  74 acaaccacaa-ccaccacgatccttacgacgacaaacgatccgaaagtt 121  Q
    |||||||||| |||||||||||||||||||||  ||||||||| |||||    
T  42049031 acaaccacaaaccaccacgatccttacgacgaggaacgatccggaagtt 42049079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 71 - 226
Target Start/End: Complemental strand, 57547 - 57392
Alignment:
Q  71 cgaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgca 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||| ||||||||| || || ||||||||| | ||||||| ||||    
T  57547 cgaacaaccacaaccaccacgatccttacgacgacaaacgatccgggagtttgttgaaggaggattaatcgtgaaagaaagagatatcgccacacttgca 57448  T
Q  171 gccgtcggaagtagatcacacatatcgatgccacacatcgcaccctccacatcaca 226  Q
    |||| || ||  | |||||| |||||| | ||||||||| |  |||||||| ||||    
T  57447 gccgccgaaaacatatcacaaatatcggtaccacacatcacctcctccacaccaca 57392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 38640125 - 38640291
Alignment:
Q  71 cgaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgca 170  Q
    |||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||| |||||||||  | |||||||||||||| |  |||||||||    
T  38640125 cgaacaaccacaaccaccacgatccttacgacgacaaacgattcgggagttcgttgaaggaggattaatcatgaatgaaagagatgtcgttacacctgca 38640224  T
Q  171 gccgtcggaagtagatcacacatatcgatgccacacatcgcaccctccacatcacatgtccgttacca 238  Q
    | ||  |||   | |||||||||||||   ||||||||| | ||||||||| ||||| ||||| ||||    
T  38640225 gtcgctggacacaaatcacacatatcggcaccacacatc-ccccctccacaccacatatccgtcacca 38640291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 53814151 - 53814214
Alignment:
Q  72 gaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggat 135  Q
    |||||||||||||||||||||||||||||||||| ||| |||||| ||| |||||||| |||||    
T  53814151 gaacaaccacaaccaccacgatccttacgacgacgaacaatccgagagtgcgttgaaggaggat 53814214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 69 - 197
Target Start/End: Complemental strand, 36271 - 36143
Alignment:
Q  69 cacgaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctg 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||  | |||| |||||||   ||||||||||    
T  36271 cacgaacaaccacaaccaccacgatccttacgacgacaaacgatccaggagttcgttgaaggaggattaatcatgaatggaagagataccgccacacctg 36172  T
Q  169 cagccgtcggaagtagatcacacatatcg 197  Q
    | ||||| | ||   ||||||||||||||    
T  36171 ccgccgtggaaaccggatcacacatatcg 36143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 14755849 - 14756000
Alignment:
Q  82 aaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgcagccgtcggaag 181  Q
    ||||||||| || |||||||||| |||||||| | ||||||||||||| | |||||||  | ||||||| ||||| |||||||| | || ||||| |||     
T  14755849 aaccaccacaatgcttacgacgaaaaacgatctggaagttcgttgaaggatgattaatcatgaatgaaaaagatgatgccacacgtacaaccgtctgaaa 14755948  T
Q  182 tagatcacacatatcgatgccacacatcgcaccctccacatcacatgtccgt 233  Q
    |||||||||||||||  | ||||||||||| ||||||||| |||||| ||||    
T  14755949 tagatcacacatatccgtaccacacatcgccccctccacaccacatgaccgt 14756000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 40024136 - 40024203
Alignment:
Q  72 gaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaat 139  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| |||||||||    
T  40024136 gaacaaccacaaccatcacgatccttacgacgacaaacgatccgagagtttgttgaaggaggattaat 40024203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 72 - 180
Target Start/End: Complemental strand, 25647262 - 25647154
Alignment:
Q  72 gaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgcag 171  Q
    |||||| ||||||||||||| ||||||||| |||||||||||||  ||| |||||||| | |||||||  | |||| ||||||| | |||||||||||||    
T  25647262 gaacaaacacaaccaccacggtccttacgatgacaaacgatccgggagtccgttgaaggatgattaatcatgaatggaagagatatcgccacacctgcag 25647163  T
Q  172 ccgtcggaa 180  Q
    |||| ||||    
T  25647162 ccgtaggaa 25647154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 14193520 - 14193434
Alignment:
Q  69 cacgaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagat 155  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||  |  ||||||||| | ||||||| || |||| |||||||    
T  14193520 cacgaacaaacacaaccaccacgatccttacgacgacaaacgatccgggatctcgttgaagtatgattaatcgtgaatggaagagat 14193434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 47235128 - 47235045
Alignment:
Q  70 acgaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagtt-cgttgaagaaggattaattgtaaatgaaaga 152  Q
    |||||||||||||||||||||||||||||| || || ||||| |||| |||| |||||||| ||||||||| ||  ||||||||    
T  47235128 acgaacaaccacaaccaccacgatccttacaacaacgaacgacccgagagttgcgttgaaggaggattaatcgtggatgaaaga 47235045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 69 - 252
Target Start/End: Complemental strand, 37122903 - 37122720
Alignment:
Q  69 cacgaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctg 168  Q
    ||||||||||| | | || || ||||||||||||||||||||||  |  ||||||||  || |||||||||  | ||||||||||||||  |||||| ||    
T  37122903 cacgaacaaccgccatcatcatgatccttacgacgacaaacgatatgggagttcgttccaggaggattaatcatgaatgaaagagatgtcaccacacttg 37122804  T
Q  169 cagccgtcggaagtagatcacacatatcgatgccacacatcgcaccctccacatcacatgtccgttaccatcactgacctcccc 252  Q
    ||||||    || | |||||||| |||| |  ||||||||| | ||||||||| | || |||||| |||| ||| |||| ||||    
T  37122803 cagccgcaaaaaatggatcacacgtatcaagaccacacatcaccccctccacaccgcacgtccgtcaccaccaccgaccacccc 37122720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 24282919 - 24282865
Alignment:
Q  85 caccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaat 139  Q
    |||||||||||||||||| || ||| |||||||||| | |||||| |||||||||    
T  24282919 caccacgatccttacgacaacgaacaatccgaaagtgcattgaaggaggattaat 24282865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 71 - 209
Target Start/End: Original strand, 20702437 - 20702575
Alignment:
Q  71 cgaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgca 170  Q
    ||||||||||| ||| |||||||||||||||  ||||||||||||  |||||||||||| |||||||||  | ||||||| |||||   |||||||||||    
T  20702437 cgaacaaccacgacctccacgatccttacgataacaaacgatccgggagttcgttgaaggaggattaatcatgaatgaaatagatgccaccacacctgca 20702536  T
Q  171 gccgtcggaagtagatcacacatatcgatgccacacatc 209  Q
    || |||||||   |||||||||||||||  |||||||||    
T  20702537 gctgtcggaaccggatcacacatatcgacaccacacatc 20702575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 31303627 - 31303523
Alignment:
Q  72 gaacaaccacaa-ccaccacgatccttacgacgacaaacgatccgaaagtt-cgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgc 169  Q
    |||||||||||| ||| || ||||||||| ||||| |||||| |||||||| |||||||| ||||||||| ||  | |||| ||||||  | ||||||||    
T  31303627 gaacaaccacaaaccatcatgatccttacaacgacgaacgattcgaaagttgcgttgaaggaggattaatcgtggaggaaaaagatgtcacaacacctgc 31303528  T
Q  170 agccg 174  Q
    |||||    
T  31303527 agccg 31303523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 76 - 238
Target Start/End: Original strand, 13954916 - 13955078
Alignment:
Q  76 aaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgcagccgt 175  Q
    |||| ||||||||||||||||||| |||||||||||| ||  |||| ||||||| ||||||||| || |||||||||||||  |||||||||| ||||      
T  13954916 aaccccaaccaccacgatccttacaacgacaaacgattcgggagtttgttgaaggaggattaatcgtgaatgaaagagatgccgccacacctgtagccac 13955015  T
Q  176 cggaagtagatcacacatatcgatgccacacatcgcaccctccacatcacatgtccgttacca 238  Q
    |||||  |||| |||| ||||||  ||| ||||| | |||||||||  ||| |||||| ||||    
T  13955016 cggaaacagataacacctatcgaaaccatacatcaccccctccacacgacacgtccgtcacca 13955078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 7392688 - 7392761
Alignment:
Q  82 aaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagat 155  Q
    ||||||||||||||||||||||||||||||||||  |||||||||| | ||||||||| || |||||| |||||    
T  7392688 aaccaccacgatccttacgacgacaaacgatccgggagttcgttgagggaggattaatcgtgaatgaacgagat 7392761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 12566718 - 12566633
Alignment:
Q  72 gaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgt 157  Q
    ||||||||| |||||||||||||| || |||||| |||||||||  ||  ||| |||| ||||||||| ||  | |||||||||||    
T  12566718 gaacaaccaaaaccaccacgatccatatgacgacgaacgatccgggagagcgtcgaaggaggattaatcgtggaggaaagagatgt 12566633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 70 - 174
Target Start/End: Complemental strand, 16146952 - 16146849
Alignment:
Q  70 acgaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgc 169  Q
    ||||| ||| ||||||||||||||||||| ||||||||||||||||  |||||||||||| ||||||||| ||  |||||||| |||| | |||||||||    
T  16146952 acgaataacgacaaccaccacgatccttatgacgacaaacgatccgggagttcgttgaaggaggattaatcgtggatgaaagatatgtcg-cacacctgc 16146854  T
Q  170 agccg 174  Q
    |||||    
T  16146853 agccg 16146849  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 7857102 - 7857022
Alignment:
Q  76 aaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatg 156  Q
    |||| |||||| |||||||||||||||||||||||||||  ||||||||||||| |||||||||  | |||| ||||||||    
T  7857102 aacctcaaccatcacgatccttacgacgacaaacgatccagaagttcgttgaaggaggattaatcatgaatggaagagatg 7857022  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 169
Target Start/End: Complemental strand, 52278004 - 52277913
Alignment:
Q  77 accacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgc 169  Q
    |||||||||||||||||||||||||||||| |||||||  ||||||||||| | ||||||||| ||| || ||| | |||| |||||||||||    
T  52278004 accacaaccaccacgatccttacgacgacatacgatccagaagttcgttgatggaggattaatcgtagat-aaaaaaatgtcgccacacctgc 52277913  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 24658358 - 24658295
Alignment:
Q  76 aaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaat 139  Q
    ||||||||||||||||||||||||||| |||||| |||||  |||||||||||| |||||||||    
T  24658358 aaccacaaccaccacgatccttacgacaacaaacaatccgggagttcgttgaaggaggattaat 24658295  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 46815062 - 46815104
Alignment:
Q  73 aacaaccacaaccaccacgatccttacgacgacaaacgatccg 115  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  46815062 aacaaccacaaccaccacgatccttacgacaacaaacgatccg 46815104  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 4391375 - 4391343
Alignment:
Q  82 aaccaccacgatccttacgacgacaaacgatcc 114  Q
    |||||||||||||||||||||||| ||||||||    
T  4391375 aaccaccacgatccttacgacgacgaacgatcc 4391343  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 34389472 - 34389405
Alignment:
Q  72 gaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaat 139  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  34389472 gaacaaccacaaccatcacgatccttacgacgacaaacgatccggaagtttgttgaaggaggattaat 34389405  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 3477824 - 3477727
Alignment:
Q  77 accacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgcagccg 174  Q
    |||| |||||||||||||||||||| ||||||||| ||   |||||||||||| ||||||||| |||||||||| |||||| | ||||||||| ||||    
T  3477824 accataaccaccacgatccttacgatgacaaacgagccaggagttcgttgaaggaggattaatcgtaaatgaaaaagatgtcgtcacacctgctgccg 3477727  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 42533938 - 42534003
Alignment:
Q  74 acaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaat 139  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||  |||||||||    
T  42533938 acaaccacaaccaccacgatccttacgacgacaaacgattcggaagttcgttgaaagaggattaat 42534003  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 73 - 207
Target Start/End: Original strand, 7191105 - 7191239
Alignment:
Q  73 aacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgcagc 172  Q
    |||||||||||||| || |||||||||||  ||||||||| |  || |||||||||| || |||| |  | |||||||||||||   |||||||||||||    
T  7191105 aacaaccacaaccatcatgatccttacgataacaaacgattcagaatttcgttgaaggagaattagtcatgaatgaaagagatgcccccacacctgcagc 7191204  T
Q  173 cgtcggaagtagatcacacatatcgatgccacaca 207  Q
     |||| ||   |||||||||||||| | |||||||    
T  7191205 tgtcgaaaacggatcacacatatcggtaccacaca 7191239  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 76 - 247
Target Start/End: Original strand, 10249038 - 10249209
Alignment:
Q  76 aaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgcagccgt 175  Q
    |||| |||||||||||||||||||||  |||||||||  |  |||||||||||| ||||||||| || |||||||||||||  |||||| ||| || | |    
T  10249038 aaccccaaccaccacgatccttacgatcacaaacgatttgggagttcgttgaaggaggattaatcgtgaatgaaagagatgccgccacaactgtagtcat 10249137  T
Q  176 cggaagtagatcacacatatcgatgccacacatcgcaccctccacatcacatgtccgttaccatcactgacc 247  Q
    |||||   || ||||| |||||   ||||||||| | ||||||||| |||| |||||| |||| ||| ||||    
T  10249138 cggaaacggaccacacctatcggcaccacacatcaccccctccacaccacacgtccgtcaccaccaccgacc 10249209  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 1578907 - 1578868
Alignment:
Q  82 aaccaccacgatccttacgacgacaaacgatccgaaagtt 121  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  1578907 aaccaccatgatccttacgacgacgaacgatccgaaagtt 1578868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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