View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1395_low_18 (Length: 305)
Name: NF1395_low_18
Description: NF1395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1395_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 62 - 244
Target Start/End: Complemental strand, 989185 - 989003
Alignment:
| Q |
62 |
aaccaaagggaaattcgaaatgttttcccaagaactagtacccaaagtatgaaccttcactttatatttgtcaacaaaattactaatattagaatcaatt |
161 |
Q |
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| T |
989185 |
aaccaaagggaaattcgaaatgttttcccaagaactagtacccaaagtatgaaccttcactttatatttgtcaacaaaattactaatattagaatcaatt |
989086 |
T |
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| Q |
162 |
aaacgtaaaaagactacaaccttgtaattatcaccaacaggatcatatccgaagccatacatcctcataacttgcctttgttt |
244 |
Q |
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| T |
989085 |
aaacgtaaaaagactacaaccttgtaattatcaccaacaggatcatatccgaagccatacatcctcataacgtgcttttgttt |
989003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 997244 - 997197
Alignment:
| Q |
177 |
acaaccttgtaattatcaccaacaggatcatatccgaagccatacatc |
224 |
Q |
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| T |
997244 |
acaaccttgtaattatcactaacagggtcatatccgaagccatacatc |
997197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 1013634 - 1013587
Alignment:
| Q |
177 |
acaaccttgtaattatcaccaacaggatcatatccgaagccatacatc |
224 |
Q |
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| T |
1013634 |
acaaccttgtaattatcactaacagggtcatatccgaagccatacatc |
1013587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 968465 - 968387
Alignment:
| Q |
66 |
aaagggaaattcgaaatgttttcccaagaactagtacccaaagtatgaaccttcactttatatttgtcaacaaaattac |
144 |
Q |
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| T |
968465 |
aaagggaacttctgaatgctttcccaagcattggtgcccaaagtatgaaccatcactttgtctttttcaacaaaattac |
968387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 1937294 - 1937336
Alignment:
| Q |
102 |
cccaaagtatgaaccttcactttatatttgtcaacaaaattac |
144 |
Q |
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| T |
1937294 |
cccaaagtatgaaccttcacttcatggttgtcaacaaaattac |
1937336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 1931469 - 1931510
Alignment:
| Q |
103 |
ccaaagtatgaaccttcactttatatttgtcaacaaaattac |
144 |
Q |
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| T |
1931469 |
ccaaagtatgaaccttcacttcatggttgtcaacaaaattac |
1931510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 22672519 - 22672566
Alignment:
| Q |
177 |
acaaccttgtaattatcaccaacaggatcatatccgaagccatacatc |
224 |
Q |
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| T |
22672519 |
acaaccttgtaattatcactaacagggtcatatccgaagcaatacatc |
22672566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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