View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1395_low_22 (Length: 295)

Name: NF1395_low_22
Description: NF1395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1395_low_22
NF1395_low_22
[»] chr5 (2 HSPs)
chr5 (84-168)||(39845111-39845195)
chr5 (84-160)||(10530471-10530547)
[»] chr3 (1 HSPs)
chr3 (88-155)||(6283620-6283687)


Alignment Details
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 39845195 - 39845111
Alignment:
Q  84 tatcataactatcctacaccttcatgaattatatacaagctgtaatgtactctatgatcaaataatgagaatcatttctattcat 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39845195 tatcataactatcctacaccttcatgaattatatacaagctgtaatgtactctatgatcaaataatgagaatcatttctattcat 39845111  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 10530547 - 10530471
Alignment:
Q  84 tatcataactatcctacaccttcatgaattatatacaagctgtaatgtactctatgatcaaataatgagaatcattt 160  Q
    |||||||| |||| |  ||||||||||| |  ||| |||||| |||||||||||||||||| ||| |||||||||||    
T  10530547 tatcataaatatcatgtaccttcatgaacttcatataagctgcaatgtactctatgatcaagtaacgagaatcattt 10530471  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 155
Target Start/End: Complemental strand, 6283687 - 6283620
Alignment:
Q  88 ataactatcctacaccttcatgaattatatacaagctgtaatgtactctatgatcaaataatgagaat 155  Q
    |||||||||||||||||  ||||| |||||| ||| |||| ||| ||||  |||||||||||||||||    
T  6283687 ataactatcctacacctctatgaactatatataaggtgtattgttctcttggatcaaataatgagaat 6283620  T

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