View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1395_low_25 (Length: 278)
Name: NF1395_low_25
Description: NF1395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1395_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 29 - 265
Target Start/End: Original strand, 42205634 - 42205870
Alignment:
| Q |
29 |
acaagtagtacatggttcaaagtatatctccaaacaaatctgccagaatgaataaaaaatcagcattgtaacttacatatcaacaatgtataaagctaga |
128 |
Q |
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| T |
42205634 |
acaagtagtacatggttcaaagtatatctccaaacaaatctgccagaatgaataaaaaatcagcattgtaacttacatatcaacaatgtataaagctaga |
42205733 |
T |
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| Q |
129 |
ttagaaaaaacatcacaaggatttcattaccggacatgaaaacttctcggtgagttcatcggtgtaagggataacagcggacgacaaatcagaactcatc |
228 |
Q |
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| T |
42205734 |
ttagaaaaaacatcacaaggatttcattaccggacatgaaaacttctcggtgagttcatcggtgtaagggataacagcggacgacaaatcagaactcatc |
42205833 |
T |
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| Q |
229 |
ttgacgaaatttttcagagaaagcgacgtaccttttc |
265 |
Q |
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| T |
42205834 |
ttgacgaaatttttcagagaaagcgacgtaccttttc |
42205870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 29 - 265
Target Start/End: Original strand, 42214502 - 42214738
Alignment:
| Q |
29 |
acaagtagtacatggttcaaagtatatctccaaacaaatctgccagaatgaataaaaaatcagcattgtaacttacatatcaacaatgtataaagctaga |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214502 |
acaagtagtacatggttcaaagtatatctccaaacaaatctgccagaatgaataaaaaatcagcattgtaacttacatatcaacaatgtataaagctaga |
42214601 |
T |
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| Q |
129 |
ttagaaaaaacatcacaaggatttcattaccggacatgaaaacttctcggtgagttcatcggtgtaagggataacagcggacgacaaatcagaactcatc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214602 |
ttagaaaaaacatcacaaggatttcattaccggacatgaaaacttctcggtgagttcatcggtgtaagggataacagcggacgacaaatcagaactcatc |
42214701 |
T |
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| Q |
229 |
ttgacgaaatttttcagagaaagcgacgtaccttttc |
265 |
Q |
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| T |
42214702 |
ttgacgaaatttttcagagaaagcgacgtaccttttc |
42214738 |
T |
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