View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1395_low_26 (Length: 275)
Name: NF1395_low_26
Description: NF1395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1395_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 50808507 - 50808745
Alignment:
| Q |
5 |
caacaaacccaagtctccaaagctgagaaaaagccgctcctctatat--ttagaactacctcttggaaatccagtactttgtcgcgggtagtacatgcac |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
50808507 |
caacaaacccaagtctccaaagctgagaaaaagccgctcctctatatatttagaactacctcttggaaatccagtactttgtcgccg-tagtacatgcac |
50808605 |
T |
|
| Q |
103 |
aaattcttcnnnnnnnnnnnnnnnnnncgatacatcgtaaaagctaaaatatacgaaagaataaaccaaatattaaattaacatatttgttgtcaagcct |
202 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50808606 |
aaattcttcaaaaaaaaaaaaaaa---cgatacatcgtaaaagctaaaatatacgaaagaataaaccaaatattaaattaacatatttgttgtcaagcct |
50808702 |
T |
|
| Q |
203 |
atttttgttacggcaatatgagtagtagacatgtagatgacaa |
245 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50808703 |
atttttgttacggcaatatgagtagtagacatgtagatgacaa |
50808745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 5 - 245
Target Start/End: Complemental strand, 50867356 - 50867117
Alignment:
| Q |
5 |
caacaaacccaagtctccaaagctgagaaaaagccgctcctctatat--ttagaactacctcttggaaatccagtactttgtcgcgggtagtacatgcac |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
50867356 |
caacaaacccaagtctccaaagctgagaaaaagccgctcctctatatatttagaactacctcttggaaatccagtactttgtcgccg-tagtacatgcac |
50867258 |
T |
|
| Q |
103 |
aaattcttcnnnnnnnnnnnnnnnnnncgatacatcgtaaaagctaaaatatacgaaagaataaaccaaatattaaattaacatatttgttgtcaagcct |
202 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50867257 |
aaattcttcaaaaaaaaaaaaaaaa--cgatacatcgtaaaagctaaaatatacgaaagaataaaccaaatattaaattaacatatttgttgtcaagcct |
50867160 |
T |
|
| Q |
203 |
atttttgttacggcaatatgagtagtagacatgtagatgacaa |
245 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50867159 |
atttttgttacggcaatatgagtagtagacatgtagatgacaa |
50867117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 43 - 245
Target Start/End: Complemental strand, 19054022 - 19053825
Alignment:
| Q |
43 |
cctctatatttagaactacctcttggaaatccagtactttgtcgcgggtagtacatgcacaaattcttcnnnnnnnnnnnnnnnnnncgatacatcgtaa |
142 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||| ||| |
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| T |
19054022 |
cctctatatttagaacttcctcttggaaatccagtactttgtcgccg-tagtacatgcacaaattcttcaaaaaaaaaaaaaaa----gatacatcataa |
19053928 |
T |
|
| Q |
143 |
aagctaaaatatacgaaagaataaaccaaatattaaattaacatatttgttgtcaagcctatttttgttacggcaatatgagtagtagacatgtagatga |
242 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19053927 |
aagctaaaatatacgaaagaataaaccaaatatgaaattaacatatttgttgtcaagcctatttttgttacggcaatatgagtagtagacatgtagatga |
19053828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 19054910 - 19054869
Alignment:
| Q |
5 |
caacaaacccaagtctccaaagctgagaaaaagccgctcctc |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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| T |
19054910 |
caacaaacccaagtctccaaagctgagaaaaagccgctcctc |
19054869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 131 - 245
Target Start/End: Original strand, 2685385 - 2685499
Alignment:
| Q |
131 |
gatacatcgtaaaagctaaaatatacgaaagaataaaccaaatattaaattaacatatttgttgtcaagcctatttttgttacggcaatatgagtagtag |
230 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2685385 |
gatacatcataaaagctaaaatataggaaagaataaaccaaatatgaaattaacatatttgttgtcaagcctatttttgttacggcaatatgagtagtag |
2685484 |
T |
|
| Q |
231 |
acatgtagatgacaa |
245 |
Q |
| |
|
||||||||||||||| |
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|
| T |
2685485 |
acatgtagatgacaa |
2685499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 131 - 245
Target Start/End: Complemental strand, 5477929 - 5477815
Alignment:
| Q |
131 |
gatacatcgtaaaagctaaaatatacgaaagaataaaccaaatattaaattaacatatttgttgtcaagcctatttttgttacggcaatatgagtagtag |
230 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5477929 |
gatacatcataaaagctaaaatataggaaagaataaaccaaatatgaaattaacatatttgttgtcaagcctatttttgttacggcaatatgagtagtag |
5477830 |
T |
|
| Q |
231 |
acatgtagatgacaa |
245 |
Q |
| |
|
||||||||||||||| |
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| T |
5477829 |
acatgtagatgacaa |
5477815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 131 - 245
Target Start/End: Original strand, 45008809 - 45008923
Alignment:
| Q |
131 |
gatacatcgtaaaagctaaaatatacgaaagaataaaccaaatattaaattaacatatttgttgtcaagcctatttttgttacggcaatatgagtagtag |
230 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45008809 |
gatacatcataaaagctaaaatataggaaagaataaaccaaatatgaaattaacatatttgttgtcaagcctatttttgttacggcaatatgagtagtag |
45008908 |
T |
|
| Q |
231 |
acatgtagatgacaa |
245 |
Q |
| |
|
||||||||||||||| |
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| T |
45008909 |
acatgtagatgacaa |
45008923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 31109925 - 31109966
Alignment:
| Q |
5 |
caacaaacccaagtctccaaagctgagaaaaagccgctcctc |
46 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31109925 |
caacaaatccaagtctccaaagctgagaaaaagccgctcctc |
31109966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 6064740 - 6064673
Alignment:
| Q |
43 |
cctctatatttagaactacctcttggaaatccagtactttgtcgcgggtagtacatgcacaaattcttc |
111 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| ||||||| | |||||||||| ||||||||||| |
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| T |
6064740 |
cctctatatttagaacttcctcttggaaatccagtgctttgtctc-cgtagtacatgaacaaattcttc |
6064673 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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