View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1395_low_27 (Length: 262)

Name: NF1395_low_27
Description: NF1395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1395_low_27
NF1395_low_27
[»] chr3 (7 HSPs)
chr3 (1-164)||(52893420-52893583)
chr3 (6-164)||(21239424-21239582)
chr3 (29-164)||(2338811-2338944)
chr3 (34-163)||(9456400-9456533)
chr3 (38-133)||(40922976-40923071)
chr3 (38-133)||(2733793-2733888)
chr3 (1-43)||(2338761-2338803)
[»] chr4 (13 HSPs)
chr4 (1-161)||(45143964-45144124)
chr4 (1-161)||(45152733-45152893)
chr4 (28-164)||(13740246-13740382)
chr4 (29-164)||(23218215-23218350)
chr4 (28-164)||(21355856-21355992)
chr4 (32-141)||(54785186-54785295)
chr4 (34-163)||(21604412-21604545)
chr4 (34-163)||(46164366-46164499)
chr4 (34-163)||(47825894-47826027)
chr4 (34-163)||(8432980-8433113)
chr4 (36-148)||(38115443-38115562)
chr4 (29-164)||(33753956-33754093)
chr4 (36-133)||(14799999-14800096)
[»] chr8 (15 HSPs)
chr8 (29-164)||(1668094-1668229)
chr8 (29-164)||(16658809-16658944)
chr8 (29-161)||(38521221-38521353)
chr8 (34-163)||(22432291-22432424)
chr8 (34-163)||(29182575-29182708)
chr8 (41-164)||(6786426-6786550)
chr8 (28-128)||(22014860-22014960)
chr8 (34-163)||(27576749-27576888)
chr8 (34-163)||(774680-774814)
chr8 (36-148)||(11472357-11472476)
chr8 (29-163)||(43916091-43916225)
chr8 (36-133)||(42808687-42808784)
chr8 (41-133)||(33360397-33360489)
chr8 (34-84)||(780362-780412)
chr8 (97-148)||(34212961-34213012)
[»] chr2 (6 HSPs)
chr2 (29-165)||(3935367-3935503)
chr2 (43-164)||(38978382-38978503)
chr2 (34-163)||(25697567-25697700)
chr2 (28-93)||(32339602-32339669)
chr2 (109-148)||(8485531-8485570)
chr2 (104-148)||(20917035-20917079)
[»] scaffold0393 (1 HSPs)
scaffold0393 (28-161)||(11163-11296)
[»] chr5 (9 HSPs)
chr5 (28-163)||(3174150-3174289)
chr5 (34-163)||(32863634-32863763)
chr5 (34-163)||(10572689-10572822)
chr5 (29-163)||(23737872-23738006)
chr5 (29-163)||(19209107-19209241)
chr5 (28-139)||(43300188-43300299)
chr5 (13-86)||(18739382-18739455)
chr5 (38-133)||(22273148-22273243)
chr5 (28-139)||(41958593-41958703)
[»] scaffold1160 (1 HSPs)
scaffold1160 (29-164)||(2456-2585)
[»] chr7 (7 HSPs)
chr7 (34-163)||(6472244-6472377)
chr7 (34-163)||(9371793-9371926)
chr7 (34-163)||(21358022-21358155)
chr7 (38-163)||(35012978-35013107)
chr7 (28-139)||(44660323-44660434)
chr7 (46-133)||(31419280-31419367)
chr7 (97-148)||(12003038-12003091)
[»] chr1 (9 HSPs)
chr1 (34-163)||(29599251-29599384)
chr1 (34-163)||(324665-324798)
chr1 (28-148)||(17480981-17481101)
chr1 (34-163)||(48184225-48184352)
chr1 (34-133)||(26355025-26355125)
chr1 (34-116)||(26014504-26014586)
chr1 (29-128)||(16764520-16764621)
chr1 (28-126)||(10801550-10801650)
chr1 (44-128)||(6165049-6165133)
[»] chr6 (5 HSPs)
chr6 (34-163)||(32397218-32397352)
chr6 (62-163)||(9302995-9303095)
chr6 (38-133)||(7171047-7171142)
chr6 (97-148)||(14654645-14654696)
chr6 (97-148)||(32397755-32397808)
[»] scaffold1084 (1 HSPs)
scaffold1084 (36-148)||(1208-1324)
[»] scaffold0285 (1 HSPs)
scaffold0285 (29-128)||(8366-8467)
[»] scaffold0054 (1 HSPs)
scaffold0054 (29-128)||(2888-2989)
[»] scaffold1300 (1 HSPs)
scaffold1300 (36-148)||(924-1043)
[»] scaffold0005 (1 HSPs)
scaffold0005 (36-133)||(39631-39728)


Alignment Details
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 52893583 - 52893420
Alignment:
Q  1 gtcaacaggtttaacaattagagttcaaaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattac 100  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||    
T  52893583 gtcaacaggtttaacaattagagttgacaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattac 52893484  T
Q  101 cttacaagttacaacaattagggtttgtggagagagatggagatagctttctaaactgaagaag 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52893483 cttacaagttacaacaattagggtttgtggagagagatggagatagctttctaaactgaagaag 52893420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 6 - 164
Target Start/End: Complemental strand, 21239582 - 21239424
Alignment:
Q  6 caggtttaacaattagagttcaaaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttac 105  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| ||||||||||    
T  21239582 caggtttaacaattagagttgacaatcaactaaagaacatgtaatcatcaaatcataatcagaattgaaggaaattacattcaatttcacattaccttac 21239483  T
Q  106 aagttacaacaattagggtttgtggagagagatggagatagctttctaaactgaagaag 164  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21239482 aagttacaacaattagggtttgtggagagagacggagatagctttctaaactgaagaag 21239424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 29 - 164
Target Start/End: Original strand, 2338811 - 2338944
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgt 128  Q
    |||||| |||||||||||||||   ||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||    
T  2338811 aatcaaataaagaacatgtaata--caaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 2338908  T
Q  129 ggagagagatggagatagctttctaaactgaagaag 164  Q
    ||||||||||||||||| || |||||||||||||||    
T  2338909 ggagagagatggagataactctctaaactgaagaag 2338944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 9456533 - 9456400
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||| |||||||| |||||||||||||||||||||||||||||    
T  9456533 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattacctttcaagttacaacaattagggtttgtggaga 9456434  T
Q  134 gaga----tggagatagctttctaaactgaagaa 163  Q
    ||||    ||||||||||| |||||||| |||||    
T  9456433 gagatggatggagatagctgtctaaactaaagaa 9456400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 40923071 - 40922976
Alignment:
Q  38 aagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    |||||||||||||||||| |  ||||||||| |||||||||| |||| || ||||| ||||||||| ||| |||||| ||||||||||||||||||    
T  40923071 aagaacatgtaatcatcagagaataatcatatttgaaggaaaatacattcaatttcttattaccttgcaatttacaagaattagggtttgtggaga 40922976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 2733888 - 2733793
Alignment:
Q  38 aagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    |||||||||||||||||| |  ||||||||| |||||||||| || | || ||||| ||||||||| ||| |||||| ||||||||||||||||||    
T  2733888 aagaacatgtaatcatcagagaataatcatatttgaaggaaaatagattcaatttcttattaccttgcaatttacaagaattagggtttgtggaga 2733793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2338761 - 2338803
Alignment:
Q  1 gtcaacaggtttaacaattagagttcaaaatcaactaaagaac 43  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  2338761 gtcaacaggtttaacaattagagttgaaaatcaactaaagaac 2338803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 45144124 - 45143964
Alignment:
Q  1 gtcaacaggtttaacaattagagttcaaaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattac 100  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||    
T  45144124 gtcaacaggtttaacaattagagttgacaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattac 45144025  T
Q  101 cttacaagttacaacaattagggtttgtggagagagatggagatagctttctaaactgaag 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45144024 cttacaagttacaacaattagggtttgtggagagagatggagatagctttctaaactgaag 45143964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 45152893 - 45152733
Alignment:
Q  1 gtcaacaggtttaacaattagagttcaaaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattac 100  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||    
T  45152893 gtcaacaggtttaacaattagagttgacaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattac 45152794  T
Q  101 cttacaagttacaacaattagggtttgtggagagagatggagatagctttctaaactgaag 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45152793 cttacaagttacaacaattagggtttgtggagagagatggagatagctttctaaactgaag 45152733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 13740246 - 13740382
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||    
T  13740246 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 13740345  T
Q  128 tggagagagatggagatagctttctaaactgaagaag 164  Q
    ||||||||||||||||||||| |||||||||||||||    
T  13740346 tggagagagatggagatagctctctaaactgaagaag 13740382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 29 - 164
Target Start/End: Original strand, 23218215 - 23218350
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgt 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||    
T  23218215 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 23218314  T
Q  129 ggagagagatggagatagctttctaaactgaagaag 164  Q
    ||||||||||||||||| || |||||||||||||||    
T  23218315 ggagagagatggagataactctctaaactgaagaag 23218350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 21355992 - 21355856
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttg 127  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||  |||||||||||||||||||||||||||||||    
T  21355992 aaatcaactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacgttaccttacaagttacaacaattagggtttg 21355893  T
Q  128 tggagagagatggagatagctttctaaactgaagaag 164  Q
    ||||||||||||||||||||| |||||||||||||||    
T  21355892 tggagagagatggagatagctctctaaactgaagaag 21355856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 54785186 - 54785295
Alignment:
Q  32 caactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtgga 131  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||    
T  54785186 caacttaagaacatgtaatcatcaaatcagaatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtgga 54785285  T
Q  132 gagagatgga 141  Q
    ||||||||||    
T  54785286 gagagatgga 54785295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 21604545 - 21604412
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||    
T  21604545 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 21604446  T
Q  134 gaga----tggagatagctttctaaactgaagaa 163  Q
    ||||    ||||||||||| |||||||| |||||    
T  21604445 gagatggatggagatagctctctaaactaaagaa 21604412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 34 - 163
Target Start/End: Original strand, 46164366 - 46164499
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||    
T  46164366 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 46164465  T
Q  134 ga----gatggagatagctttctaaactgaagaa 163  Q
    ||    ||||||||||||| |||||||| |||||    
T  46164466 gagatggatggagatagctctctaaactaaagaa 46164499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 47826027 - 47825894
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||    
T  47826027 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 47825928  T
Q  134 gaga----tggagatagctttctaaactgaagaa 163  Q
    ||||    ||||||||||| |||||||| |||||    
T  47825927 gagatggatggagatagctctctaaactaaagaa 47825894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 163
Target Start/End: Original strand, 8432980 - 8433113
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||| ||| || |||||| |||||||||||||| |||||||||||||||||||||||    
T  8432980 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaataacattcaatttcacattaccttacaagtaacaacaattagggtttgtggaga 8433079  T
Q  134 ga----gatggagatagctttctaaactgaagaa 163  Q
    ||    |||||||||||||||||||||| |||||    
T  8433080 gagatggatggagatagctttctaaactaaagaa 8433113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 38115562 - 38115443
Alignment:
Q  36 taaagaacatgtaatcatcaaatcataatcataatt----gaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggt---ttgt 128  Q
    |||| ||||||||||||||| |||| ||||||||||    ||||||||||||| || |||||| |||||||||||| ||||||||||||||||   ||||    
T  38115562 taaaaaacatgtaatcatcatatcagaatcataattaattgaaggaaattacattcaatttcacattaccttacaaattacaacaattagggtttgttgt 38115463  T
Q  129 ggagagagatggagatagct 148  Q
    ||||||||||| ||||||||    
T  38115462 ggagagagatgaagatagct 38115443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 164
Target Start/End: Original strand, 33753956 - 33754093
Alignment:
Q  29 aatcaactaaagaac--atgtaatcatcaaatcataatcataattgaaggaaattacaatcgat--ttcatatt-accttacaagttacaacaattaggg 123  Q
    |||||||||||||||  ||||||||||||||||| |||||||||||||| |||||||| || ||  ||||  || || ||||   |||||||||||||||    
T  33753956 aatcaactaaagaactcatgtaatcatcaaatcaaaatcataattgaagaaaattacattcaatatttcaatttcacattac---ttacaacaattaggg 33754052  T
Q  124 tttgtggagagagatggagatagctttctaaactgaagaag 164  Q
    |||||||| ||||||||||||| || || ||||||||||||    
T  33754053 tttgtggaaagagatggagataactctcaaaactgaagaag 33754093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 133
Target Start/End: Original strand, 14799999 - 14800096
Alignment:
Q  36 taaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||| |||||||||| |  ||||||||| |||||||||| |||| |  |||||||||||||||  || |||||| ||||||||||||||||||    
T  14799999 taaagaacacgtaatcatcagagaataatcatatttgaaggaaaatacatttaatttcatattaccttgaaatttacaaaaattagggtttgtggaga 14800096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 29 - 164
Target Start/End: Complemental strand, 1668229 - 1668094
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgt 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||    
T  1668229 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 1668130  T
Q  129 ggagagagatggagatagctttctaaactgaagaag 164  Q
    |||||||||||||||||||| |||||||||||||||    
T  1668129 ggagagagatggagatagctctctaaactgaagaag 1668094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 29 - 164
Target Start/End: Complemental strand, 16658944 - 16658809
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgt 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||    
T  16658944 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 16658845  T
Q  129 ggagagagatggagatagctttctaaactgaagaag 164  Q
    |||||||||||||||||||| |||||||||||||||    
T  16658844 ggagagagatggagatagctctctaaactgaagaag 16658809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 29 - 161
Target Start/End: Original strand, 38521221 - 38521353
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgt 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||    
T  38521221 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 38521320  T
Q  129 ggagagagatggagatagctttctaaactgaag 161  Q
    ||||||||||||||||| || ||||||||||||    
T  38521321 ggagagagatggagataactctctaaactgaag 38521353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 34 - 163
Target Start/End: Original strand, 22432291 - 22432424
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||    
T  22432291 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 22432390  T
Q  134 ga----gatggagatagctttctaaactgaagaa 163  Q
    ||    ||||||||||||| |||||||| |||||    
T  22432391 gagatggatggagatagctctctaaactaaagaa 22432424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 34 - 163
Target Start/End: Original strand, 29182575 - 29182708
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||    
T  29182575 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 29182674  T
Q  134 ga----gatggagatagctttctaaactgaagaa 163  Q
    ||    ||||||||||||| |||||||| |||||    
T  29182675 gagatggatggagatagctctctaaactaaagaa 29182708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 41 - 164
Target Start/End: Complemental strand, 6786550 - 6786426
Alignment:
Q  41 aacatgtaatcatcaaatcataatcataattgaaggaaattacaatcga-tttcatattaccttacaagttacaacaattagggtttgtggagagagatg 139  Q
    |||||||||||||||||||| ||||| ||||||||||| ||||| || | ||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  6786550 aacatgtaatcatcaaatcaaaatcagaattgaaggaagttacattcaaatttcacattaccttacaagttacagcaattagggtttgtggagagagatg 6786451  T
Q  140 gagatagctttctaaactgaagaag 164  Q
    |||||||||||| ||||||||||||    
T  6786450 gagatagctttcaaaactgaagaag 6786426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 22014960 - 22014860
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttg 127  Q
    ||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||| || |||||| |||| |||||||||||||||||||||||||||    
T  22014960 aaatcaactaaagaatatgtaatcatcaaacaataatcataattgaaggaaattacattcaatttcacattaacttacaagttacaacaattagggtttg 22014861  T
Q  128 t 128  Q
    |    
T  22014860 t 22014860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 27576888 - 27576749
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataat------tgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttg 127  Q
    ||||||||||||||||||||||||||| ||||| |||      |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||    
T  27576888 actaaagaacatgtaatcatcaaatcagaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 27576789  T
Q  128 tggagagaga----tggagatagctttctaaactgaagaa 163  Q
    ||||||||||    ||||||||||| |||||||| |||||    
T  27576788 tggagagagatggatggagatagctctctaaactaaagaa 27576749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 163
Target Start/End: Original strand, 774680 - 774814
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcga-tttcatattaccttacaagttacaacaattagggtttgtggag 132  Q
    ||||||||||||||||| |||| |||| ||||| ||||||||||||||||| || | ||||| ||||||||| |||||||||||||||||||||||||||    
T  774680 actaaagaacatgtaattatcatatcagaatcagaattgaaggaaattacattcaaatttcacattaccttataagttacaacaattagggtttgtggag 774779  T
Q  133 a--ga--gatggagatagctttctaaactgaagaa 163  Q
    |  ||  ||||||||||||| |||||||| |||||    
T  774780 aaggatggatggagatagctctctaaactaaagaa 774814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 11472357 - 11472476
Alignment:
Q  36 taaagaacatgtaatcatcaaatcataatcataat----tgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtt---tgt 128  Q
    |||||||||||||||||||| |||| |||||||||    |||||||||||||| || |||||| |||||||||||| |||||||||||||||||   |||    
T  11472357 taaagaacatgtaatcatcatatcagaatcataattaattgaaggaaattacattcaatttcacattaccttacaaattacaacaattagggttttctgt 11472456  T
Q  129 ggagagagatggagatagct 148  Q
    ||||||||||| ||||||||    
T  11472457 ggagagagatgaagatagct 11472476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 43916225 - 43916091
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgt 128  Q
    ||||||||||| |||||| |||| | |||  | ||||| | ||||||||||||||| |  | |||| ||| |||||||| |||||||||| ||||||| |    
T  43916225 aatcaactaaataacatgcaatcgttaaagaagaatcagatttgaaggaaattacattaaaattcacatttccttacaatttacaacaatcagggtttat 43916126  T
Q  129 ggagagagatggagatagctttctaaactgaagaa 163  Q
    |||||||||||||||||||| ||||||||||||||    
T  43916125 ggagagagatggagatagctctctaaactgaagaa 43916091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 42808784 - 42808687
Alignment:
Q  36 taaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    |||||||||||||||||||| |  ||||||||| |||||||||| |||| || ||||||||||||||| ||| |||||| ||||||||||||||||||    
T  42808784 taaagaacatgtaatcatcagagaataatcatatttgaaggaaaatacattcaatttcatattaccttgcaatttacaagaattagggtttgtggaga 42808687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 133
Target Start/End: Complemental strand, 33360489 - 33360397
Alignment:
Q  41 aacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||| |  ||||||||| |||||||||| |||| || ||||||||||| ||| ||| |||| | ||||||||||||||||||    
T  33360489 aacatgtaatcatcagagaataatcatatttgaaggaaaatacattcaatttcatattaacttgcaatttaccagaattagggtttgtggaga 33360397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 780362 - 780412
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattaca 84  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  780362 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattaca 780412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 34212961 - 34213012
Alignment:
Q  97 ttaccttacaagttacaacaattagggtttgtggagagagatggagatagct 148  Q
    ||||||||||| |||||| || ||||||||||||||||||||||||||||||    
T  34212961 ttaccttacaatttacaagaactagggtttgtggagagagatggagatagct 34213012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 29 - 165
Target Start/End: Original strand, 3935367 - 3935503
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgt 128  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||    
T  3935367 aatcaactaaagaacatgtaatcatcaaattataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 3935466  T
Q  129 ggagagagatggagatagctttctaaactgaagaagt 165  Q
    |||||||||||||||||||| ||||||||||||||||    
T  3935467 ggagagagatggagatagctctctaaactgaagaagt 3935503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 43 - 164
Target Start/End: Original strand, 38978382 - 38978503
Alignment:
Q  43 catgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggagagagatggag 142  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  38978382 catgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacactaccttacaagttacaacaattagggtttgtggagagagatggag 38978481  T
Q  143 atagctttctaaactgaagaag 164  Q
    ||||||||||||||||||||||    
T  38978482 atagctttctaaactgaagaag 38978503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 163
Target Start/End: Original strand, 25697567 - 25697700
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||| |||||||||||||| |||||||||||||||||||||||    
T  25697567 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagtaacaacaattagggtttgtggaga 25697666  T
Q  134 ga----gatggagatagctttctaaactgaagaa 163  Q
    ||    ||||||||||||| |||||||| |||||    
T  25697667 gagatggatggagatagctctctaaactaaagaa 25697700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 32339669 - 32339602
Alignment:
Q  28 aaatcaactaaagaac--atgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttc 93  Q
    ||||||||||||||||  ||||||||||||||||| |||||||||||||| |||||||| || |||||    
T  32339669 aaatcaactaaagaactcatgtaatcatcaaatcagaatcataattgaagaaaattacattcaatttc 32339602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 8485531 - 8485570
Alignment:
Q  109 ttacaacaattagggtttgtggagagagatggagatagct 148  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  8485531 ttacaagaattagggtttgtggagagagatagagatagct 8485570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 20917079 - 20917035
Alignment:
Q  104 acaagttacaacaattagggtttgtggagagagatggagatagct 148  Q
    |||| |||||| || || |||||||||||||||||||||||||||    
T  20917079 acaatttacaagaactaaggtttgtggagagagatggagatagct 20917035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 28 - 161
Target Start/End: Original strand, 11163 - 11296
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||| ||||    
T  11163 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattaggatttg 11262  T
Q  128 tggagagagatggagatagctttctaaactgaag 161  Q
    ||||||||||||||||||||| ||||||||||||    
T  11263 tggagagagatggagatagctctctaaactgaag 11296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 28 - 163
Target Start/End: Complemental strand, 3174289 - 3174150
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||    
T  3174289 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 3174190  T
Q  128 tggagagaga----tggagatagctttctaaactgaagaa 163  Q
    ||||||||||    ||||||||||| |||||||| |||||    
T  3174189 tggagagagatggatggagatagctctctaaactaaagaa 3174150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 32863763 - 32863634
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||    
T  32863763 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 32863664  T
Q  134 gagatggagatagctttctaaactgaagaa 163  Q
      ||||||||||||| |||||||| |||||    
T  32863663 tggatggagatagctctctaaactaaagaa 32863634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 10572822 - 10572689
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||    
T  10572822 actaaagaacatgtaatcatcaaatcagaatcacaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 10572723  T
Q  134 gaga----tggagatagctttctaaactgaagaa 163  Q
    ||||    ||||||||||| |||||||| |||||    
T  10572722 gagatggatggagatagctctctaaactaaagaa 10572689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 23738006 - 23737872
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgt 128  Q
    ||||||||||||||||||||||||| |||  | ||||| | ||||||||||||||| || ||||||| ||||||||||| |||||||||||||||||| |    
T  23738006 aatcaactaaagaacatgtaatcattaaagaagaatcagatttgaaggaaattacattcaatttcatgttaccttacaatttacaacaattagggtttat 23737907  T
Q  129 ggagagagatggagatagctttctaaactgaagaa 163  Q
    ||||||||||| |||||||| | ||||||||||||    
T  23737906 ggagagagatgcagatagctctttaaactgaagaa 23737872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 19209107 - 19209241
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgt 128  Q
    ||||||||||||||||||||||||| ||| || ||||| | ||||||||||||||| || ||||||  ||||||||| | |||||||||||||||||| |    
T  19209107 aatcaactaaagaacatgtaatcattaaagcagaatcagatttgaaggaaattacattcaatttcacgttaccttacgatttacaacaattagggtttat 19209206  T
Q  129 ggagagagatggagatagctttctaaactgaagaa 163  Q
    ||||||||||| |||||||| | ||||||||||||    
T  19209207 ggagagagatgcagatagctctttaaactgaagaa 19209241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 43300299 - 43300188
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttg 127  Q
    |||||||| ||||||||||||||||| |||  | ||||| ||||||| ||||||||| || |||||| ||||||||| || ||||||||||||||||||     
T  43300299 aaatcaacaaaagaacatgtaatcattaaagaaaaatcagaattgaacgaaattacattcaatttcacattaccttataatttacaacaattagggttta 43300200  T
Q  128 tggagagagatg 139  Q
    ||||||||||||    
T  43300199 tggagagagatg 43300188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 18739382 - 18739455
Alignment:
Q  13 aacaattagagttcaaaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaat 86  Q
    ||||||||| |||  |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  18739382 aacaattagggttggaaatcaactaaataacatgtaatcatcaaatcagaatcataattgaaggaaattacaat 18739455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 22273148 - 22273243
Alignment:
Q  38 aagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    |||||||||||||||||| |  ||||||||| |||||||||| || | || ||||| ||||||||| ||| |||||| ||||||||||||||||||    
T  22273148 aagaacatgtaatcatcagagaataatcatatttgaaggaaaatagattcaatttcttattaccttgcaatttacaagaattagggtttgtggaga 22273243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 41958593 - 41958703
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttg 127  Q
    |||||||||||| ||||||||||||| |||  | ||||| ||||||| ||||||||| || |||||| ||||||||  || | ||||||||||||||||     
T  41958593 aaatcaactaaa-aacatgtaatcattaaagaaaaatcagaattgaacgaaattacattcaatttcacattaccttgtaattaacaacaattagggttta 41958691  T
Q  128 tggagagagatg 139  Q
    ||||||||||||    
T  41958692 tggagagagatg 41958703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1160 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 29 - 164
Target Start/End: Complemental strand, 2585 - 2456
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgt 128  Q
    ||||||||||||||||||||||||||||||||||||      |||||||||||||| || |||||| |||||||||||||||||||||||||||||||||    
T  2585 aatcaactaaagaacatgtaatcatcaaatcataat------tgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 2492  T
Q  129 ggagagagatggagatagctttctaaactgaagaag 164  Q
    |||||||||||||||||||| |||||||||||||||    
T  2491 ggagagagatggagatagctctctaaactgaagaag 2456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 34 - 163
Target Start/End: Original strand, 6472244 - 6472377
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||    
T  6472244 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 6472343  T
Q  134 ga----gatggagatagctttctaaactgaagaa 163  Q
    ||    ||||||||||||| |||||||| |||||    
T  6472344 gagatggatggagatagctctctaaactaaagaa 6472377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 9371926 - 9371793
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||    
T  9371926 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 9371827  T
Q  134 gaga----tggagatagctttctaaactgaagaa 163  Q
    ||||    ||||||||||| |||||||| |||||    
T  9371826 gagatggatggagatagctctctaaactaaagaa 9371793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 34 - 163
Target Start/End: Original strand, 21358022 - 21358155
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||    
T  21358022 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 21358121  T
Q  134 ga----gatggagatagctttctaaactgaagaa 163  Q
    ||    ||||||||||||| |||||||| |||||    
T  21358122 gagatggatggagatagctctctaaactaaagaa 21358155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 38 - 163
Target Start/End: Original strand, 35012978 - 35013107
Alignment:
Q  38 aagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggagaga-- 135  Q
    ||||||||||||| ||||||||| |||||  |||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||      
T  35012978 aagaacatgtaattatcaaatcagaatcaggattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagaga 35013077  T
Q  136 --gatggagatagctttctaaactgaagaa 163  Q
      ||||||||||||| |||||||| |||||    
T  35013078 tggatggagatagctctctaaactaaagaa 35013107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 44660434 - 44660323
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttg 127  Q
    |||||||||||||||||||||||||| |||  | ||||| ||||||| ||||||||| || |||||| ||||||||| || ||| ||||||||||||||     
T  44660434 aaatcaactaaagaacatgtaatcattaaagaaaaatcagaattgaacgaaattacattcaatttcacattaccttataatttagaacaattagggttta 44660335  T
Q  128 tggagagagatg 139  Q
    ||||||||||||    
T  44660334 tggagagagatg 44660323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 31419367 - 31419280
Alignment:
Q  46 gtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    |||||||||| |  ||||||||| |||||||||| |||| || ||||| ||||||||| ||| |||||| ||||||||||||||||||    
T  31419367 gtaatcatcagagaataatcatatttgaaggaaaatacattcaatttcttattaccttgcaatttacaagaattagggtttgtggaga 31419280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 12003038 - 12003091
Alignment:
Q  97 ttaccttacaagttacaacaattagggtttgtgg--agagagatggagatagct 148  Q
    ||||||||||| |||||| ||||||||| |||||  ||||||||||||||||||    
T  12003038 ttaccttacaatttacaagaattagggtgtgtggaaagagagatggagatagct 12003091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 34 - 163
Target Start/End: Original strand, 29599251 - 29599384
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||    
T  29599251 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 29599350  T
Q  134 ga----gatggagatagctttctaaactgaagaa 163  Q
    ||    ||||||||||||| |||||||| |||||    
T  29599351 gagatggatggagatagctctctaaactaaagaa 29599384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 324798 - 324665
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    |||||||||||| |||||||||||||| ||||| ||||||||||||||||| || |||||| |||||||||||||||||||||||||||| |||||||||    
T  324798 actaaagaacatctaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggcttgtggaga 324699  T
Q  134 gaga----tggagatagctttctaaactgaagaa 163  Q
    ||||    ||||||||||| |||||||| |||||    
T  324698 gagatggatggagatagctctctaaactaaagaa 324665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 148
Target Start/End: Original strand, 17480981 - 17481101
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttg 127  Q
    |||||||  |||||||||||||||||||||  ||||||||| |||||||||| |||| || |||||| |||||||||||| |||||| ||||||| ||||    
T  17480981 aaatcaatcaaagaacatgtaatcatcaaagaataatcatatttgaaggaaaatacattcaatttcacattaccttacaatttacaagaattaggatttg 17481080  T
Q  128 tggagagagatggagatagct 148  Q
    |||||||||||||||||||||    
T  17481081 tggagagagatggagatagct 17481101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 48184352 - 48184225
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| |||      |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||    
T  48184352 actaaagaacatgtaatcatcaaatcagaat------tgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 48184259  T
Q  134 gaga----tggagatagctttctaaactgaagaa 163  Q
    ||||    ||||||||||| |||||||| |||||    
T  48184258 gagatggatggagatagctctctaaactaaagaa 48184225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 26355125 - 26355025
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcga-tttcatattaccttacaagttacaacaattagggtttgtggag 132  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||| ||||| || | ||||| |||||||||||||||||||||||||||||||||||||    
T  26355125 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaagttacattcaaatttcacattaccttacaagttacaacaattagggtttgtggag 26355026  T
Q  133 a 133  Q
    |    
T  26355025 a 26355025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 26014586 - 26014504
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaaca 116  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||||||||| || |||||| |||||||||||||||||||||    
T  26014586 actaaataacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaaca 26014504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 16764520 - 16764621
Alignment:
Q  29 aatcaactaaagaacat--gtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggttt 126  Q
    ||||||||||| |||||  ||||||||||||||| ||||| ||||||||  ||||||| || |||||| |||| ||||||||||||||||||||||||||    
T  16764520 aatcaactaaaaaacatatgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggttt 16764619  T
Q  127 gt 128  Q
    ||    
T  16764620 gt 16764621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 10801550 - 10801650
Alignment:
Q  28 aaatcaactaaagaacat--gtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtt 125  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||||||||  ||||||| || |||||| |||| |||||||||||||||||||||||||    
T  10801550 aaatcaactaaaaaacatatgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtt 10801649  T
Q  126 t 126  Q
    |    
T  10801650 t 10801650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 6165049 - 6165133
Alignment:
Q  44 atgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgt 128  Q
    ||||||||||||||||| ||||| ||||||||  ||||||| || |||||| |||| ||||||||||||||||||||||||||||    
T  6165049 atgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgt 6165133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 32397352 - 32397218
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatc-gatttcatattaccttacaagttacaacaattagggtttgtggag 132  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||  |||||| ||||||||| |||||||||||||||||||||||||||    
T  32397352 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaaatttcacattaccttataagttacaacaattagggtttgtggag 32397253  T
Q  133 a--ga--gatggagatagctttctaaactgaagaa 163  Q
    |  ||  ||||||||||||| |||||||| |||||    
T  32397252 aaggatggatggagatagctctctaaactaaagaa 32397218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 9303095 - 9302995
Alignment:
Q  62 aatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggagagagatggagatagctttctaaactgaag 161  Q
    ||||| ||||||||||||||||| || |||||| |||||||| ||||||  ||||||||||||||||||||||||||||||||| || ||| ||||| ||    
T  9303095 aatcaaaattgaaggaaattacattcaatttcacattacctttcaagttt-aacaattagggtttgtggagagagatggagataactctctgaactggag 9302997  T
Q  162 aa 163  Q
    ||    
T  9302996 aa 9302995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 7171142 - 7171047
Alignment:
Q  38 aagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    |||||||||||||||||| |  ||||||||| |||||||||| || | || ||||| ||||||||| ||| |||||| ||||||||||||||||||    
T  7171142 aagaacatgtaatcatcagagaataatcatatttgaaggaaaatagattcaatttcttattaccttgcaatttacaagaattagggtttgtggaga 7171047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 14654645 - 14654696
Alignment:
Q  97 ttaccttacaagttacaacaattagggtttgtggagagagatggagatagct 148  Q
    ||||||||||| |||||| || ||||||||||||||||||||||||||||||    
T  14654645 ttaccttacaatttacaagaactagggtttgtggagagagatggagatagct 14654696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 32397808 - 32397755
Alignment:
Q  97 ttaccttacaagttacaacaattagggtttgtggaga--gagatggagatagct 148  Q
    ||||||||||| |||||| || |||||||||||||||  |||||||||||||||    
T  32397808 ttaccttacaatttacaagaactagggtttgtggagagagagatggagatagct 32397755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1084 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold1084
Description:

Target: scaffold1084; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 1324 - 1208
Alignment:
Q  36 taaagaacatgtaatcatcaaatcataatcataatt----gaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtgga 131  Q
    |||| ||||||||||||||| |||| ||||||||||    ||||||||||||| || |||||| |||||||||||| ||||||||||||| |||||| |     
T  1324 taaaaaacatgtaatcatcatatcagaatcataattaattgaaggaaattacattcaatttcacattaccttacaaattacaacaattagtgtttgttgt 1225  T
Q  132 gagagatggagatagct 148  Q
    |||||||| ||||||||    
T  1224 gagagatgaagatagct 1208  T

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Target: scaffold0285 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 8366 - 8467
Alignment:
Q  29 aatcaactaaagaacat--gtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggttt 126  Q
    ||||||||||| |||||  ||||||||||||||| ||||| ||||||||  ||||||| || |||||| |||| ||||||||||||||||||||||||||    
T  8366 aatcaactaaaaaacatatgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggttt 8465  T
Q  127 gt 128  Q
    ||    
T  8466 gt 8467  T

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Target: scaffold0054 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 2989 - 2888
Alignment:
Q  29 aatcaactaaagaacat--gtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggttt 126  Q
    ||||||||||| |||||  ||||||||||||||| ||||| ||||||||  ||||||| || |||||| |||| ||||||||||||||||||||||||||    
T  2989 aatcaactaaaaaacatatgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggttt 2890  T
Q  127 gt 128  Q
    ||    
T  2889 gt 2888  T

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Target: scaffold1300 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 924 - 1043
Alignment:
Q  36 taaagaacatgtaatcatcaaatcataatcataattga----aggaaattacaatcgatttcatattaccttacaagttacaacaattagggt---ttgt 128  Q
    |||||||||| ||||||||| |||| |||||||||| |    ||||||||||| || |||||| |||||||||||| ||||||||||||||||   ||||    
T  924 taaagaacatataatcatcatatcagaatcataattaattaaaggaaattacattcaatttcacattaccttacaaattacaacaattagggtttgttgt 1023  T
Q  129 ggagagagatggagatagct 148  Q
    ||||||||||| ||||||||    
T  1024 ggagagagatgaagatagct 1043  T

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Target: scaffold0005 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 39728 - 39631
Alignment:
Q  36 taaagaacatgtaatcatcaaatcataatcataattgaaggaaattacaatcgatttcatattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||| |||||||||| |  ||||||||| |||||||||| |||| |  |||||||||||||||  || |||||| ||||||||||||||||||    
T  39728 taaagaacacgtaatcatcagagaataatcatatttgaaggaaaatacatttaatttcatattaccttgaaatttacaaaaattagggtttgtggaga 39631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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