View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1395_low_28 (Length: 261)
Name: NF1395_low_28
Description: NF1395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1395_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 41039882 - 41039785
Alignment:
| Q |
148 |
tcgtgtggttgctgtacacgttatgaaaaaatactaacgaaaataatatgtcgtgtggttgctgtacagtgtacatgttaggaaacataataataaca |
245 |
Q |
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| T |
41039882 |
tcgtgtggttgctgtacacgttatgaaaaaatactaacgaaaataatatgtcgtgtggtttctgtacagtgtacatgttaggaaacataataataaca |
41039785 |
T |
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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 121
Target Start/End: Complemental strand, 41039973 - 41039883
Alignment:
| Q |
30 |
aaaccctctatccaaatacacactaaatgccatgcaatgttgaaacagtgagaggggtaattacaattgaatgtttatcttcaattaaaaga |
121 |
Q |
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| T |
41039973 |
aaaccttccatccaaacacaccctaaatgtcatgacatgttgaaagagggagaggg-taattacaattgaatgtttatcttcaattaaaaga |
41039883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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