View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1395_low_4 (Length: 405)
Name: NF1395_low_4
Description: NF1395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1395_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 2 - 376
Target Start/End: Original strand, 34053332 - 34053706
Alignment:
| Q |
2 |
gaggagtagcaaaggtgataggacttggcaaattgcatttggttctggatttaaatgtaacagtgctgtgtggcgtgcattgaggaccgttgatccagcc |
101 |
Q |
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| T |
34053332 |
gaggattagaaaaggtgataggacttggcaaattgcatttggttctggatttaaatgtaacagtgctgtgtggcgtgcattgaggaccgttgatccagct |
34053431 |
T |
|
| Q |
102 |
aaggagaaaaatccatggatggatgagattcatgagtttcctgttcatgtgcctaaagtggcaaccattggttcatcaagttaggaagaaatttgtttaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34053432 |
aaggagaaaaatccatggatggatgagattcatgagtttcctgttcatgtgcctaaagtggcaaccattggttcatcaagttaggaagaaatttgtttaa |
34053531 |
T |
|
| Q |
202 |
ggaatttaattgattccacatttaatctttaggaaagagtgtgcaaaaatacaagattaattactttcagcagatatgtttgatagtttagcagcttgtt |
301 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34053532 |
ggaatttaattaattccacatttaatctttaggaaagagtgtgcaaaaatacaagattaattactttcagcagatatgtttgatagtttagcagcttgtt |
34053631 |
T |
|
| Q |
302 |
ctatagtgtgttgaagttgaaacagtcataattattgtccatttgaacatttgttacatgattttttgttgcctt |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34053632 |
ctatagtgtgttgaagttgaaacagtcataattattgtccatttgaacatttgttacatgattttttgttgcctt |
34053706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 15239643 - 15239792
Alignment:
| Q |
12 |
aaaggtgataggacttggcaaattgcatttggttctggatttaaatgtaacagtgctgtgtggcgtgcattgaggaccgttgatccagccaaggagaaaa |
111 |
Q |
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| T |
15239643 |
aaaggtgatagaacttggcaaattgcatttggttctggttttaagtgtaatagtgctgtttggaaagcattgaagactattaatcctgcaaaggagaaga |
15239742 |
T |
|
| Q |
112 |
atccatggatggatgagattcatgagtttcctgttcatgtgcctaaagtg |
161 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
15239743 |
atccttggattgatgagattcatgagtttcctgttcatgtgcctaaagtg |
15239792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 151
Target Start/End: Complemental strand, 27776505 - 27776366
Alignment:
| Q |
12 |
aaaggtgataggacttggcaaattgcatttggttctggatttaaatgtaacagtgctgtgtggcgtgcattgaggaccgttgatccagccaaggagaaaa |
111 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||| ||| |||| || |||| |||||||| | ||||||| | |
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| T |
27776505 |
aaaggtgataggatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatcctgttaaggagatta |
27776406 |
T |
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| Q |
112 |
atccatggatggatgagattcatgagtttcctgttcatgt |
151 |
Q |
| |
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|||| |||| |||||| ||||||| ||||||||| |||| |
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| T |
27776405 |
atccttggagtgatgagcttcatgaatttcctgttgatgt |
27776366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 12 - 151
Target Start/End: Complemental strand, 19742866 - 19742727
Alignment:
| Q |
12 |
aaaggtgataggacttggcaaattgcatttggttctggatttaaatgtaacagtgctgtgtggcgtgcattgaggaccgttgatccagccaaggagaaaa |
111 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||| ||||||| |||||| ||| ||||||| |||| ||||||||| || |||| | |
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| T |
19742866 |
aaaggtgataggatttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttggtgtgcattaaggaatgttgatccaattaaagagatca |
19742767 |
T |
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| Q |
112 |
atccatggatggatgagattcatgagtttcctgttcatgt |
151 |
Q |
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|||| |||| |||||||| |||||||||||||| |||| |
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| T |
19742766 |
atccttggagtgatgagataaatgagtttcctgttgatgt |
19742727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 12 - 151
Target Start/End: Original strand, 19797222 - 19797361
Alignment:
| Q |
12 |
aaaggtgataggacttggcaaattgcatttggttctggatttaaatgtaacagtgctgtgtggcgtgcattgaggaccgttgatccagccaaggagaaaa |
111 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||| ||||||| |||||| ||| ||||||| |||| ||||||||| || |||| | |
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| T |
19797222 |
aaaggtgataggatttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttggtgtgcattaaggaatgttgatccaattaaagagatca |
19797321 |
T |
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| Q |
112 |
atccatggatggatgagattcatgagtttcctgttcatgt |
151 |
Q |
| |
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|||| |||| |||||||| |||||||||||||| |||| |
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| T |
19797322 |
atccttggagtgatgagataaatgagtttcctgttgatgt |
19797361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 19671746 - 19671660
Alignment:
| Q |
12 |
aaaggtgataggacttggcaaattgcatttggttctggatttaaatgtaacagtgctgtgtggcgtgcattgaggaccgttgatcca |
98 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||| ||||||| | |||| ||| ||||||| |||| ||||||||| |
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| T |
19671746 |
aaaggtgataggatttggcaaattgcatttgggtctggatttaagtgtaacactcctgtttggtgtgcattaaggaatgttgatcca |
19671660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 151
Target Start/End: Complemental strand, 19539823 - 19539684
Alignment:
| Q |
12 |
aaaggtgataggacttggcaaattgcatttggttctggatttaaatgtaacagtgctgtgtggcgtgcattgaggaccgttgatccagccaaggagaaaa |
111 |
Q |
| |
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||||||||||||| |||||||||||||||||| ||| ||||||| ||||||| |||||| ||| ||||||| | || ||||||||| || |||| | |
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| T |
19539823 |
aaaggtgataggatttggcaaattgcatttgggtctagatttaagtgtaacactgctgtttggtgtgcattaaagaatgttgatccaattaaagagatca |
19539724 |
T |
|
| Q |
112 |
atccatggatggatgagattcatgagtttcctgttcatgt |
151 |
Q |
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|||| |||| |||||||| ||||||||||||| |||| |
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| T |
19539723 |
atccttggagtgatgagataagtgagtttcctgttgatgt |
19539684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 46572851 - 46572907
Alignment:
| Q |
18 |
gataggacttggcaaattgcatttggttctggatttaaatgtaacagtgctgtgtgg |
74 |
Q |
| |
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||||| || |||||||| ||||||||||||||||| || ||||||||||| |||||| |
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|
| T |
46572851 |
gatagaacatggcaaatagcatttggttctggattcaagtgtaacagtgcagtgtgg |
46572907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 48672361 - 48672412
Alignment:
| Q |
26 |
ttggcaaattgcatttggttctggatttaaatgtaacagtgctgtgtggcgt |
77 |
Q |
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||||||| |||| ||||||||||| ||||| |||||||||||||| |||||| |
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| T |
48672361 |
ttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttggcgt |
48672412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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