View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1395_low_40 (Length: 202)

Name: NF1395_low_40
Description: NF1395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1395_low_40
NF1395_low_40
[»] chr2 (3 HSPs)
chr2 (40-136)||(4959920-4960016)
chr2 (12-46)||(4960020-4960054)
chr2 (53-89)||(29568175-29568211)
[»] chr3 (3 HSPs)
chr3 (8-89)||(3750386-3750467)
chr3 (44-85)||(11579083-11579124)
chr3 (53-89)||(22914912-22914948)
[»] scaffold0091 (1 HSPs)
scaffold0091 (40-89)||(811-860)
[»] chr8 (4 HSPs)
chr8 (53-90)||(32009317-32009354)
chr8 (40-89)||(1039271-1039321)
chr8 (40-89)||(11709233-11709281)
chr8 (53-89)||(7454968-7455004)
[»] scaffold0299 (1 HSPs)
scaffold0299 (53-89)||(19009-19045)
[»] chr7 (4 HSPs)
chr7 (53-89)||(30765234-30765270)
chr7 (53-91)||(9549274-9549312)
chr7 (53-89)||(5643826-5643862)
chr7 (53-89)||(5649678-5649714)
[»] chr5 (5 HSPs)
chr5 (40-87)||(31392931-31392978)
chr5 (40-86)||(1684621-1684667)
chr5 (40-89)||(38608130-38608179)
chr5 (53-89)||(19330196-19330232)
chr5 (53-89)||(26377349-26377385)
[»] chr6 (6 HSPs)
chr6 (40-89)||(8305922-8305970)
chr6 (40-89)||(12738355-12738403)
chr6 (40-89)||(19860343-19860391)
chr6 (53-89)||(18043199-18043235)
chr6 (53-89)||(18735861-18735897)
chr6 (53-89)||(24438879-24438915)
[»] chr4 (2 HSPs)
chr4 (53-90)||(26781099-26781136)
chr4 (53-89)||(28891783-28891819)
[»] chr1 (3 HSPs)
chr1 (60-89)||(9263413-9263442)
chr1 (39-89)||(23933951-23934003)
chr1 (40-88)||(9858829-9858876)
[»] scaffold0083 (1 HSPs)
scaffold0083 (53-89)||(4500-4536)
[»] scaffold0063 (1 HSPs)
scaffold0063 (53-89)||(37082-37118)


Alignment Details
Target: chr2 (Bit Score: 73; Significance: 1e-33; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 4960016 - 4959920
Alignment:
Q  40 accaccacattaaaaagcatcgacaatcaccttctgatcaggtacgatcaccgtcctaccgatgagtaccactaaaaccagtattatctacccacca 136  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||| ||||||    
T  4960016 accaccacattaaagagcatcgacaatcaccttctgatcaggtacgatcaccgtcctaccgacgagtaccactaaaaccaatataaactaaccacca 4959920  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 4960054 - 4960020
Alignment:
Q  12 gttccagtactcaaactgacgcgtttccaccacca 46  Q
    ||||||| |||||||||||||||||||||||||||    
T  4960054 gttccagcactcaaactgacgcgtttccaccacca 4960020  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 29568211 - 29568175
Alignment:
Q  53 aaagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    |||||| |||| |||||||||||||||||||||||||    
T  29568211 aaagcaccgacgatcaccttctgatcaggtacgatca 29568175  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 3750386 - 3750467
Alignment:
Q  8 cgccgttccagtactcaaactgacgcgtttccaccaccacattaaa-aagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    |||||||| ||||||||| ||||||| ||||||||||||||||||| ||||| |||||  |||| ||| ||||||||||||||    
T  3750386 cgccgttctagtactcaa-ctgacgcatttccaccaccacattaaagaagcaccgacagccaccatctaatcaggtacgatca 3750467  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 11579083 - 11579124
Alignment:
Q  44 ccacattaaaaagcatcgacaatcaccttctgatcaggtacg 85  Q
    |||||||||| |||| ||||| ||||||||||||||||||||    
T  11579083 ccacattaaagagcaccgacattcaccttctgatcaggtacg 11579124  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 22914948 - 22914912
Alignment:
Q  53 aaagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  22914948 aaagcaccgacagtcaccttctgatcaggtacgatca 22914912  T

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Target: scaffold0091 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 860 - 811
Alignment:
Q  40 accaccacattaaaaagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    |||||||||||||| |||| ||||||||||||||||||||  ||||||||    
T  860 accaccacattaaatagcaccgacaatcaccttctgatcaaatacgatca 811  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 32009317 - 32009354
Alignment:
Q  53 aaagcatcgacaatcaccttctgatcaggtacgatcac 90  Q
    |||||| |||||||||||||||||||||||||||||||    
T  32009317 aaagcaccgacaatcaccttctgatcaggtacgatcac 32009354  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 1039271 - 1039321
Alignment:
Q  40 accaccacattaaa-aagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    |||||| ||||||| |||||||| || ||||||||||||||||||||||||    
T  1039271 accaccgcattaaagaagcatcggcagtcaccttctgatcaggtacgatca 1039321  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 11709281 - 11709233
Alignment:
Q  40 accaccacattaaaaagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||| |||||    
T  11709281 accaccacatttaaa-gcaccgacaatcaccttctgatcaggtatgatca 11709233  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 7454968 - 7455004
Alignment:
Q  53 aaagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    |||||| |||||||||| |||||||||||||||||||    
T  7454968 aaagcaccgacaatcacattctgatcaggtacgatca 7455004  T

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Target: scaffold0299 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 19045 - 19009
Alignment:
Q  53 aaagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    |||||| ||||||||||||||||||||||||||||||    
T  19045 aaagcaccgacaatcaccttctgatcaggtacgatca 19009  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 30765234 - 30765270
Alignment:
Q  53 aaagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    |||||| ||||||||||||||||||||||||||||||    
T  30765234 aaagcaccgacaatcaccttctgatcaggtacgatca 30765270  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 9549274 - 9549312
Alignment:
Q  53 aaagcatcgacaatcaccttctgatcaggtacgatcacc 91  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  9549274 aaagcatcggcagtcaccttctgatcaggtacgatcacc 9549312  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 5643862 - 5643826
Alignment:
Q  53 aaagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  5643862 aaagcaccgacagtcaccttctgatcaggtacgatca 5643826  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 5649714 - 5649678
Alignment:
Q  53 aaagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  5649714 aaagcaccgacagtcaccttctgatcaggtacgatca 5649678  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 31392978 - 31392931
Alignment:
Q  40 accaccacattaaaaagcatcgacaatcaccttctgatcaggtacgat 87  Q
    |||||||||||||| |||||||| | | ||||||||||||||||||||    
T  31392978 accaccacattaaatagcatcgaaagttaccttctgatcaggtacgat 31392931  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 1684621 - 1684667
Alignment:
Q  40 accaccacattaaaaagcatcgacaatcaccttctgatcaggtacga 86  Q
    |||||| ||||||| |||||||||| ||| |||||||||||||||||    
T  1684621 accaccgcattaaagagcatcgacagtcatcttctgatcaggtacga 1684667  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 38608179 - 38608130
Alignment:
Q  40 accaccacattaaaaagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    |||||| |||| ||||||| || || ||||||||||||||||||||||||    
T  38608179 accaccgcatttaaaagcaccggcagtcaccttctgatcaggtacgatca 38608130  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 19330196 - 19330232
Alignment:
Q  53 aaagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  19330196 aaagcaccgacagtcaccttctgatcaggtacgatca 19330232  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 26377349 - 26377385
Alignment:
Q  53 aaagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  26377349 aaagcaccgacagtcaccttctgatcaggtacgatca 26377385  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 8305970 - 8305922
Alignment:
Q  40 accaccacattaaaaagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    ||||||||||| ||| ||| ||||| ||||||||||||||||||||||||    
T  8305970 accaccacattcaaa-gcaccgacagtcaccttctgatcaggtacgatca 8305922  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 12738403 - 12738355
Alignment:
Q  40 accaccacattaaaaagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    ||||||||||| ||| ||| |||||||||| |||||||||||||||||||    
T  12738403 accaccacatttaaa-gcaccgacaatcactttctgatcaggtacgatca 12738355  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 19860343 - 19860391
Alignment:
Q  40 accaccacattaaaaagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    ||||||||||| ||| ||| || |||||||||||||||||||||||||||    
T  19860343 accaccacatttaaa-gcaccggcaatcaccttctgatcaggtacgatca 19860391  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 18043235 - 18043199
Alignment:
Q  53 aaagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    |||||| || |||||||||||||||||||||||||||    
T  18043235 aaagcaccggcaatcaccttctgatcaggtacgatca 18043199  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 18735897 - 18735861
Alignment:
Q  53 aaagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  18735897 aaagcaccgacaatcaccttatgatcaggtacgatca 18735861  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 24438879 - 24438915
Alignment:
Q  53 aaagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  24438879 aaagcaccgacagtcaccttctgatcaggtacgatca 24438915  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 26781099 - 26781136
Alignment:
Q  53 aaagcatcgacaatcaccttctgatcaggtacgatcac 90  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  26781099 aaagcaccgacagtcaccttctgatcaggtacgatcac 26781136  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 28891819 - 28891783
Alignment:
Q  53 aaagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    |||||| |||||||||||||||||||||||| |||||    
T  28891819 aaagcaccgacaatcaccttctgatcaggtatgatca 28891783  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 89
Target Start/End: Original strand, 9263413 - 9263442
Alignment:
Q  60 cgacaatcaccttctgatcaggtacgatca 89  Q
    ||||||||||||||||||||||||||||||    
T  9263413 cgacaatcaccttctgatcaggtacgatca 9263442  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 23933951 - 23934003
Alignment:
Q  39 caccaccacattaaa--aagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    |||||||||||||||  ||||| ||||| |||||||||||||||||| |||||    
T  23933951 caccaccacattaaaccaagcaccgacagtcaccttctgatcaggtatgatca 23934003  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 9858876 - 9858829
Alignment:
Q  40 accaccacattaaaaagcatcgacaatcaccttctgatcaggtacgatc 88  Q
    ||||||||||| ||| ||| ||||| |||||||||||||||||||||||    
T  9858876 accaccacatttaaa-gcaccgacagtcaccttctgatcaggtacgatc 9858829  T

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Target: scaffold0083 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 4500 - 4536
Alignment:
Q  53 aaagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  4500 aaagcaccgacagtcaccttctgatcaggtacgatca 4536  T

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Target: scaffold0063 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 37082 - 37118
Alignment:
Q  53 aaagcatcgacaatcaccttctgatcaggtacgatca 89  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  37082 aaagcaccgacagtcaccttctgatcaggtacgatca 37118  T

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