View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1395_low_5 (Length: 403)

Name: NF1395_low_5
Description: NF1395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1395_low_5
NF1395_low_5
[»] chr4 (3 HSPs)
chr4 (82-366)||(41536676-41536961)
chr4 (333-366)||(7371570-7371603)
chr4 (333-366)||(29910467-29910500)
[»] chr1 (1 HSPs)
chr1 (360-403)||(6588857-6588900)
[»] chr7 (6 HSPs)
chr7 (333-366)||(47960902-47960935)
chr7 (333-367)||(22062434-22062468)
chr7 (333-362)||(29347008-29347037)
chr7 (325-366)||(30622970-30623011)
chr7 (325-366)||(40200977-40201018)
chr7 (326-366)||(35165532-35165572)
[»] chr8 (2 HSPs)
chr8 (333-366)||(7987751-7987784)
chr8 (326-366)||(10967211-10967251)
[»] chr6 (2 HSPs)
chr6 (333-366)||(10664637-10664670)
chr6 (331-367)||(9923244-9923280)
[»] chr5 (3 HSPs)
chr5 (325-366)||(33899865-33899906)
chr5 (325-366)||(40445981-40446022)
chr5 (326-366)||(35610014-35610054)
[»] chr3 (1 HSPs)
chr3 (333-366)||(43679812-43679845)
[»] chr2 (3 HSPs)
chr2 (333-366)||(7640664-7640697)
chr2 (325-366)||(8387907-8387948)
chr2 (330-366)||(9982628-9982664)
[»] scaffold0533 (1 HSPs)
scaffold0533 (322-366)||(8873-8917)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 82 - 366
Target Start/End: Original strand, 41536676 - 41536961
Alignment:
Q  82 ccatcaaccttttatttttcaaccagtaacttttccattatactcgaacacatagaataattaaaaggacaaaacttatgtacatttttacatgttcagt 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||| ||||||||||||||||||||    
T  41536676 ccatcaaccttttatttttcaaccagtaacttttccattatactcgaacacatagaataattaaaatcacaaaaattatatacatttttacatgttcagt 41536775  T
Q  182 tttgttgtt--gctcccataaagaatcaatttttatttattctgaacagtgnnnnnnnnnctatcaatttnnnnnnnttgcacatataaaactgcattta 279  Q
    |||||||||  |||||||||||||||||||||||||||||| |||||||||         ||||||||||       |||||||||||||||||||||||    
T  41536776 tttgttgttgcgctcccataaagaatcaatttttatttattttgaacagtg-aaaaaaaactatcaatttaaaaaaattgcacatataaaactgcattta 41536874  T
Q  280 agtttttaaatagtttagttgctataaaaccattctttgagatcttcgtgtgtttaactcaattgataaggacaatacataatatat 366  Q
    ||||||||||||||||||||||||||||  |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41536875 agtttttaaatagtttagttgctataaattcattgtttgagatcttcgtgagtttaactcaattgataaggacaatacataatatat 41536961  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 366
Target Start/End: Complemental strand, 7371603 - 7371570
Alignment:
Q  333 ttaactcaattgataaggacaatacataatatat 366  Q
    |||||||| |||||||||||||||||||||||||    
T  7371603 ttaactcagttgataaggacaatacataatatat 7371570  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 366
Target Start/End: Original strand, 29910467 - 29910500
Alignment:
Q  333 ttaactcaattgataaggacaatacataatatat 366  Q
    ||||||||||||||||||||||| ||||||||||    
T  29910467 ttaactcaattgataaggacaatgcataatatat 29910500  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 360 - 403
Target Start/End: Complemental strand, 6588900 - 6588857
Alignment:
Q  360 aatatatagtagtagaaaatagtgtgatcttaaatttaatctac 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  6588900 aatatatagtagtagaaaatagtgtgatcttaaatttaatctac 6588857  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 366
Target Start/End: Original strand, 47960902 - 47960935
Alignment:
Q  333 ttaactcaattgataaggacaatacataatatat 366  Q
    ||||||||||||||||||||||||||||||||||    
T  47960902 ttaactcaattgataaggacaatacataatatat 47960935  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 367
Target Start/End: Complemental strand, 22062468 - 22062434
Alignment:
Q  333 ttaactcaattgataaggacaatacataatatata 367  Q
    |||||||||||| ||||||||||||||||||||||    
T  22062468 ttaactcaattggtaaggacaatacataatatata 22062434  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 362
Target Start/End: Complemental strand, 29347037 - 29347008
Alignment:
Q  333 ttaactcaattgataaggacaatacataat 362  Q
    ||||||||||||||||||||||||||||||    
T  29347037 ttaactcaattgataaggacaatacataat 29347008  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 366
Target Start/End: Original strand, 30622970 - 30623011
Alignment:
Q  325 tcgtgtgtttaactcaattgataaggacaatacataatatat 366  Q
    ||||| ||||||||||||||||  ||||||||||||||||||    
T  30622970 tcgtgagtttaactcaattgattgggacaatacataatatat 30623011  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 366
Target Start/End: Complemental strand, 40201018 - 40200977
Alignment:
Q  325 tcgtgtgtttaactcaattgataaggacaatacataatatat 366  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||    
T  40201018 tcgtgagtttagctcaattgatatggacaatacataatatat 40200977  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 366
Target Start/End: Original strand, 35165532 - 35165572
Alignment:
Q  326 cgtgtgtttaactcaattgataaggacaatacataatatat 366  Q
    |||| |||||||||| ||||||| |||||||||||||||||    
T  35165532 cgtgagtttaactcagttgataacgacaatacataatatat 35165572  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 366
Target Start/End: Complemental strand, 7987784 - 7987751
Alignment:
Q  333 ttaactcaattgataaggacaatacataatatat 366  Q
    |||||||||||| |||||||||||||||||||||    
T  7987784 ttaactcaattgctaaggacaatacataatatat 7987751  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 366
Target Start/End: Original strand, 10967211 - 10967251
Alignment:
Q  326 cgtgtgtttaactcaattgataaggacaatacataatatat 366  Q
    |||| ||||||||||||||||||| ||||| ||||||||||    
T  10967211 cgtgagtttaactcaattgataagaacaatgcataatatat 10967251  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 366
Target Start/End: Original strand, 10664637 - 10664670
Alignment:
Q  333 ttaactcaattgataaggacaatacataatatat 366  Q
    |||||||||||||||||||| |||||||||||||    
T  10664637 ttaactcaattgataaggacgatacataatatat 10664670  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 367
Target Start/End: Original strand, 9923244 - 9923280
Alignment:
Q  331 gtttaactcaattgataaggacaatacataatatata 367  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  9923244 gtttagctcaattgataaggacaatgcataatatata 9923280  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 366
Target Start/End: Complemental strand, 33899906 - 33899865
Alignment:
Q  325 tcgtgtgtttaactcaattgataaggacaatacataatatat 366  Q
    ||||||||||| ||||||||||| | ||||||||||||||||    
T  33899906 tcgtgtgtttagctcaattgataggaacaatacataatatat 33899865  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 366
Target Start/End: Original strand, 40445981 - 40446022
Alignment:
Q  325 tcgtgtgtttaactcaattgataaggacaatacataatatat 366  Q
    ||||| |||||||||| |||||||||||||| ||||||||||    
T  40445981 tcgtgagtttaactcagttgataaggacaatgcataatatat 40446022  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 366
Target Start/End: Complemental strand, 35610054 - 35610014
Alignment:
Q  326 cgtgtgtttaactcaattgataaggacaatacataatatat 366  Q
    |||| |||||||||||||||||  |||||||||||||||||    
T  35610054 cgtgagtttaactcaattgatatagacaatacataatatat 35610014  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 366
Target Start/End: Original strand, 43679812 - 43679845
Alignment:
Q  333 ttaactcaattgataaggacaatacataatatat 366  Q
    ||||||||||||||||||||||| ||||||||||    
T  43679812 ttaactcaattgataaggacaatgcataatatat 43679845  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 366
Target Start/End: Original strand, 7640664 - 7640697
Alignment:
Q  333 ttaactcaattgataaggacaatacataatatat 366  Q
    |||||||||||| |||||||||||||||||||||    
T  7640664 ttaactcaattggtaaggacaatacataatatat 7640697  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 366
Target Start/End: Complemental strand, 8387948 - 8387907
Alignment:
Q  325 tcgtgtgtttaactcaattgataaggacaatacataatatat 366  Q
    ||||| |||||||||||||| |||||||||| ||||||||||    
T  8387948 tcgtgagtttaactcaattggtaaggacaatgcataatatat 8387907  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 9982628 - 9982664
Alignment:
Q  330 tgtttaactcaattgataaggacaatacataatatat 366  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  9982628 tgtttaactcagttgataaggacaatgcataatatat 9982664  T

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Target: scaffold0533 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 8917 - 8873
Alignment:
Q  322 tcttcgtgtgtttaactcaattgataaggacaatacataatatat 366  Q
    |||||||| | |||||||||||| |||||||||| ||||||||||    
T  8917 tcttcgtgagcttaactcaattggtaaggacaatgcataatatat 8873  T

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