View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1395_low_6 (Length: 392)
Name: NF1395_low_6
Description: NF1395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1395_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 186 - 360
Target Start/End: Original strand, 13492079 - 13492253
Alignment:
| Q |
186 |
ttggtaaagtatcaggttgtatttctaattcttcctcttcatcactcagagggagacgatggagagaatccatgggaattgaagtgagaaaggaaaggga |
285 |
Q |
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| T |
13492079 |
ttggtaaagtatcaggttgtatttctaattcttcctcttcatcactcagcgggagatgatggagagaatccatgggaattgaagtgagaaaggaaaggga |
13492178 |
T |
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| Q |
286 |
aagttaaaaggtgttgaaagtaaacttctcacaaggagagaacgagaaaaaaccttacttctcactaggagagaa |
360 |
Q |
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| T |
13492179 |
aagttgaaaggtgttgaaagtaaacttctcacaaggagagaacgagaaaaaaccttacttctcactaggagagaa |
13492253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 30735600 - 30735658
Alignment:
| Q |
99 |
attattcaatagcatcattgtagtctttattgaaatctaatacaaaatacatttatgca |
157 |
Q |
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| T |
30735600 |
attattcaataatatcattgtagtatttattgaaatctaatacaaaatacatttatgca |
30735658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 23146090 - 23146037
Alignment:
| Q |
307 |
aaacttctcacaaggagagaacgagaaaaaaccttacttctcactaggagagaaa |
361 |
Q |
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| T |
23146090 |
aaacttctcacaaggagagaatgagagaaaa-cttacttctcacaaggagagaaa |
23146037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 54310802 - 54310749
Alignment:
| Q |
100 |
ttattcaatagcatcattgtagtctttattgaaatctaatacaaaatacattta |
153 |
Q |
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| T |
54310802 |
ttattcaatcgtatcattgtagtctttattgaaatgttatacataatacattta |
54310749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 52364125 - 52364165
Alignment:
| Q |
113 |
tcattgtagtctttattgaaatctaatacaaaatacattta |
153 |
Q |
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| T |
52364125 |
tcattgtagtctttattgaaatgttatacataatacattta |
52364165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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