View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1395_low_8 (Length: 352)

Name: NF1395_low_8
Description: NF1395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1395_low_8
NF1395_low_8
[»] chr5 (1 HSPs)
chr5 (51-338)||(15673064-15673362)


Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 51 - 338
Target Start/End: Original strand, 15673064 - 15673362
Alignment:
Q  51 ttggtatcaagagccctcatagggttatgcgaaggtttagcaaaaaca-----------ttcatgtatcaagagggtaaactgatcatttttagcaaaat 139  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||           |||||||||||||||||||||||||||||||||||||||||    
T  15673064 ttggtatcaagagccctcatagggttatgtgaaggtttggcaaaaacattcatgtaacattcatgtatcaagagggtaaactgatcatttttagcaaaat 15673163  T
Q  140 atgggagcaggagtacaatttcgagggtccatataccatcgtaattaagggactactcgagctggattggcccagcaaaaaccaatgatgataggctatt 239  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15673164 atgggggcaggagtacaatttcgagggtccatatatcatcgtaattaagtgactactcgagctggattggcccagcaaaaaccaatgatgataggctatt 15673263  T
Q  240 ttgtcttggaaaattgctccttttcactttcaaaatgtctttcagacacttcaaaaatacaaaaacgtcttcggcggtagttaaccgtcattgttcctt 338  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15673264 ttgtcttggaaaattgctctttttcactttcaaaatgtctttgagacacttcaaaaatacaaaaacgtcttcggcggtagttaaccgtcattgttcctt 15673362  T

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