View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1396-INSERTION-2 (Length: 533)
Name: NF1396-INSERTION-2
Description: NF1396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1396-INSERTION-2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 8 - 533
Target Start/End: Complemental strand, 17746812 - 17746287
Alignment:
| Q |
8 |
catgtctgtcacaataaaatctcactagcacgtttgtgttctattccatttgaattattggaagatgcattaaagtacaatggactattcactagggaag |
107 |
Q |
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| T |
17746812 |
catgtctgtcacaataaaatctcactagcacgtttgtgttctattccatttgaattattggaagatgcattaaagtacaatggactattcactagggaag |
17746713 |
T |
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| Q |
108 |
gggttagatccaactgtgaaaagggaaaaagacaatacttttnnnnnnngatgtgactacaaattatacaatcaagtagattagaacatgttcctctcta |
207 |
Q |
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| T |
17746712 |
gggttagatccaattgtgaaaagggaaaaagacaatacttttaaaaaaagatgtgactacatattatacaatcaagtagattagaacatgttcctctcta |
17746613 |
T |
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| Q |
208 |
gtagttatcatccttcctcctggaaggggacaaatcataggcttttcctatataacaatagaaacaaaccatgattaatataataagcagctaatctttg |
307 |
Q |
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| T |
17746612 |
gtagttatcatccttcctcctggaaggggacaaatcataggcttttccaatataacaatagaaacaaaccatgattaatataataagcacctaatctttg |
17746513 |
T |
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| Q |
308 |
tctattaaatatgtaattagacaaacgtttaatattataaactgttattagtcaaaaccaaaagaagtttttacggtcaacaaaagttgattcagttggt |
407 |
Q |
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| T |
17746512 |
tctattaaatatgtgattagacaaacgtttaatattataaactgttattagacaaaaccaaaagaagtttttgcggtcaacaaaagttgattcagttagt |
17746413 |
T |
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| Q |
408 |
atgatttagatttagttagaattcaactcatattttaatatgacttggatttgaatctaatgtcaatataaatactacgttgatagataatatataagaa |
507 |
Q |
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| T |
17746412 |
atgatttagattcggttagaattcaactcatattttaatatgacttggatttgaatctaatgtcaatataaatactacgttgatagataatatataagaa |
17746313 |
T |
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| Q |
508 |
catctataaatattttgagtcttaga |
533 |
Q |
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| T |
17746312 |
catctataaatattttgagtcttaga |
17746287 |
T |
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