View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1396-INSERTION-4 (Length: 627)

Name: NF1396-INSERTION-4
Description: NF1396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1396-INSERTION-4
NF1396-INSERTION-4
[»] chr1 (2 HSPs)
chr1 (8-627)||(37217733-37218339)
chr1 (306-350)||(37204494-37204538)


Alignment Details
Target: chr1 (Bit Score: 546; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 8 - 627
Target Start/End: Complemental strand, 37218339 - 37217733
Alignment:
Q  8 tcaacttcattcatattcattaattcacaagtatcctctacttccacttcgatcggagattccacatccaatgattttggaacactcaaatgctaatcaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37218339 tcaacttcattcatattcattaattcacaagtatcctctacttccacttcgatcggagattccacatccaatgattttggaacactcaaatgctaatcaa 37218240  T
Q  108 atgcattcctctgagacaagactaaaagactggttgatgaaaatggaaagaaaccaatttctttggagaaagataaattaaaccaagaagacttaataga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37218239 atgcattcctctgagacaagactaaaagactggttgatgaaaatggaaagaaaccaatttctttggagaaagataaattaaaccaagaagacttaataga 37218140  T
Q  208 tttggtgtttaacttaggttggtttggttttattttttgatgaaggatattttatttgtagttgtgtatggaaaagatttccaaattggtccctagtgat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37218139 tttggtgtttaacttaggttggtttggttttattttttgatgaaggatattttatttgtagttgtgtatggaaaagacttccaaattggtccctagtgat 37218040  T
Q  308 atccctctctcaggtttggaccatactcttgtaaaaaagatagtttcgttgagcaattatatatgaagagtcgtgattgtttaagaaaagcttcacttgt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37218039 atccctctctcaggtttggaccatactcttgtaaaaaagatagtttcattgagcaattatatatgaagagtcgtgattgtttaagaaaagcttcacttgt 37217940  T
Q  408 taccttcaagacaagaattcataagaaaaaggtccaaataattctgcatatataggaactttgactctagtccaaaaaaccaaatttataagtacattta 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37217939 taccttcaagacaagaattcataagaaaaaggtccaaataattctgcatatataggaactttgactctagtccaaaaaaccaaatttataagtacattta 37217840  T
Q  508 ttcacttgagtccattttgagaaataagacctacagaattataactactaaattttaaaggtatttattttgaataacttaccgtta-aaatatatgact 606  Q
    ||  ||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  37217839 tttgcttgagtccattttgagaaataagac--------------ctactaaattttaaaggtatttattttgaataacttactgttagaaatatatgact 37217754  T
Q  607 ccacttttttatcaaaacaaa 627  Q
    |||||||||||||||||||||    
T  37217753 ccacttttttatcaaaacaaa 37217733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 37204538 - 37204494
Alignment:
Q  306 atatccctctctcaggtttggaccatactcttgtaaaaaagatag 350  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||    
T  37204538 atatccctctctcagttttggaccatactcttgtaaaaatgatag 37204494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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