View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1396-INSERTION-5 (Length: 510)

Name: NF1396-INSERTION-5
Description: NF1396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1396-INSERTION-5
NF1396-INSERTION-5
[»] chr6 (8 HSPs)
chr6 (15-510)||(4653007-4653498)
chr6 (37-246)||(8925359-8925568)
chr6 (37-246)||(8935616-8935825)
chr6 (374-510)||(708979-709114)
chr6 (374-510)||(7100228-7100364)
chr6 (374-510)||(8794266-8794402)
chr6 (374-510)||(5957190-5957329)
chr6 (379-434)||(10009598-10009653)
[»] chr2 (17 HSPs)
chr2 (19-246)||(16150419-16150646)
chr2 (374-477)||(2288523-2288625)
chr2 (374-510)||(15284412-15284552)
chr2 (374-477)||(7488047-7488149)
chr2 (374-477)||(35172555-35172659)
chr2 (374-477)||(21736522-21736625)
chr2 (374-477)||(36598385-36598487)
chr2 (374-477)||(37981686-37981788)
chr2 (374-479)||(16155474-16155578)
chr2 (375-475)||(17330775-17330873)
chr2 (374-433)||(16146884-16146943)
chr2 (413-479)||(14920538-14920604)
chr2 (35-88)||(22141602-22141655)
chr2 (374-434)||(18176429-18176489)
chr2 (374-424)||(43022569-43022619)
chr2 (35-88)||(3669718-3669771)
chr2 (374-434)||(2085609-2085669)
[»] chr1 (15 HSPs)
chr1 (19-246)||(23301665-23301892)
chr1 (374-510)||(19007464-19007599)
chr1 (374-510)||(48194654-48194790)
chr1 (374-504)||(48203412-48203542)
chr1 (46-230)||(26926066-26926252)
chr1 (374-479)||(27198335-27198440)
chr1 (374-444)||(52179641-52179711)
chr1 (375-475)||(4288998-4289098)
chr1 (374-479)||(14555226-14555331)
chr1 (374-434)||(42657778-42657837)
chr1 (374-434)||(14229011-14229071)
chr1 (374-430)||(39758044-39758100)
chr1 (374-430)||(39763398-39763454)
chr1 (374-434)||(43553600-43553660)
chr1 (374-434)||(51826796-51826856)
[»] chr7 (12 HSPs)
chr7 (375-510)||(46037234-46037369)
chr7 (401-485)||(21067025-21067109)
chr7 (374-475)||(41060049-41060150)
chr7 (373-477)||(9598982-9599086)
chr7 (373-477)||(9826553-9826657)
chr7 (369-477)||(12253308-12253416)
chr7 (374-477)||(37042480-37042583)
chr7 (374-430)||(46202513-46202569)
chr7 (375-433)||(33474583-33474641)
chr7 (401-478)||(48399776-48399857)
chr7 (374-431)||(26201525-26201582)
chr7 (375-427)||(3634278-3634330)
[»] chr4 (15 HSPs)
chr4 (374-510)||(38230836-38230972)
chr4 (374-477)||(42314963-42315066)
chr4 (376-477)||(53594152-53594253)
chr4 (374-477)||(28100499-28100602)
chr4 (375-475)||(53271974-53272074)
chr4 (374-445)||(37370836-37370907)
chr4 (374-479)||(28847017-28847122)
chr4 (374-433)||(20538995-20539055)
chr4 (374-430)||(44646785-44646841)
chr4 (374-424)||(1848497-1848547)
chr4 (374-435)||(36094268-36094329)
chr4 (374-434)||(16653318-16653378)
chr4 (401-477)||(56397534-56397610)
chr4 (374-434)||(41762043-41762104)
chr4 (374-434)||(27529143-27529203)
[»] chr5 (12 HSPs)
chr5 (374-509)||(2276090-2276225)
chr5 (374-477)||(28594358-28594462)
chr5 (374-477)||(26806493-26806596)
chr5 (374-477)||(26795429-26795532)
chr5 (374-479)||(378297-378402)
chr5 (374-475)||(39753499-39753600)
chr5 (374-477)||(3604370-3604473)
chr5 (374-424)||(26795603-26795653)
chr5 (375-424)||(26806667-26806716)
chr5 (374-479)||(9689260-9689356)
chr5 (401-445)||(27786295-27786339)
chr5 (384-434)||(40460537-40460587)
[»] chr3 (19 HSPs)
chr3 (375-510)||(44701609-44701742)
chr3 (373-477)||(45926862-45926966)
chr3 (374-477)||(10104810-10104913)
chr3 (374-477)||(10215958-10216060)
chr3 (374-477)||(10225587-10225689)
chr3 (374-434)||(44042005-44042065)
chr3 (374-445)||(12103351-12103422)
chr3 (380-477)||(85820-85918)
chr3 (373-423)||(10055755-10055805)
chr3 (374-424)||(10104984-10105034)
chr3 (375-424)||(10225760-10225809)
chr3 (380-477)||(46749321-46749417)
chr3 (374-424)||(10216131-10216181)
chr3 (375-477)||(23697070-23697174)
chr3 (375-433)||(23715525-23715583)
chr3 (375-433)||(23733981-23734039)
chr3 (375-433)||(23752439-23752497)
chr3 (373-426)||(34292472-34292525)
chr3 (374-434)||(45215361-45215421)
[»] chr8 (5 HSPs)
chr8 (374-434)||(14061610-14061670)
chr8 (154-230)||(1000601-1000677)
chr8 (374-477)||(43488970-43489073)
chr8 (374-430)||(42366114-42366170)
chr8 (374-434)||(24317975-24318035)
[»] scaffold0472 (1 HSPs)
scaffold0472 (374-477)||(1802-1905)
[»] scaffold0287 (1 HSPs)
scaffold0287 (375-427)||(11755-11807)


Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 15 - 510
Target Start/End: Original strand, 4653007 - 4653498
Alignment:
Q  15 ctcattttggcataattctcataaaatttgaaagcttcttcctcacttaaaaaacactgtccaataaaaggttcgaaatagttttcaatagtaattactt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| |||    
T  4653007 ctcattttggcataattctcataaaatttgaaagcttcttcctcacttagaaaatattgtccaataaaaggttcgaaatagttttcaatagtaattgctt 4653106  T
Q  115 cttgttcattgctactcaactcaactactccactttctgaattaccacttggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaa 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4653107 cttgttcattgctactcaactcaactactccactttctgaattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttatgattctcaa 4653206  T
Q  215 cctacataaataaattgtaagcaggaaggtttnnnnnnnnnnnnctaatgaagtaataataatttttaaccacatgtgggctttattaaagcaataacta 314  Q
    ||||||||||||||||| ||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4653207 cctacataaataaattgaaagcaggaaggttt-----gaaaaaactaatgaagtaataataatttttaaccacatgtgggctttattaaagcaataacta 4653301  T
Q  315 gtcccacatcgaacatttgagaagcgggtgtattgcatttagatttcaatggattttaagta-ttcaatcaagatttttataaagtgtaaataaatcttg 413  Q
    |||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||| |||||||||||||||    
T  4653302 gtcccacatcgaacttttgagaagcaggtgtattggatttagatttcaatggattttaagtattttaatcaagacttttataaaatgtaaataaatcttg 4653401  T
Q  414 tggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattcaattgaaattccctacgacttatgaattgtctattgg 510  Q
    ||||||||||| |||||||||||||||||||||||| | ||||||||||||||| ||||||||||| |||  ||| |||||||||||||||||||||    
T  4653402 tggtattcaattaagacaatcgtaacttttttgttaggacaacaaaatccgttgatattcaattgagattttctaagacttatgaattgtctattgg 4653498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 37 - 246
Target Start/End: Original strand, 8925359 - 8925568
Alignment:
Q  37 aaaatttgaaagcttcttcctcacttaaaaaacactgtccaataaaaggttcgaaatagttttcaatagtaattacttcttgttcattgctactcaactc 136  Q
    ||||||||||||||||||||||||||| ||||||| | || ||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||    
T  8925359 aaaatttgaaagcttcttcctcacttagaaaacaccgccctataaaaggttcaaaatcgttttcaatagtaattgcttcttgttcattgctactcaactc 8925458  T
Q  137 aactactccactttctgaattaccacttggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaacctacataaataaattgtaagc 236  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8925459 aactacttcactttctgaattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaacctacataaataaattgaaagc 8925558  T
Q  237 aggaaggttt 246  Q
    ||||||||||    
T  8925559 aggaaggttt 8925568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 37 - 246
Target Start/End: Original strand, 8935616 - 8935825
Alignment:
Q  37 aaaatttgaaagcttcttcctcacttaaaaaacactgtccaataaaaggttcgaaatagttttcaatagtaattacttcttgttcattgctactcaactc 136  Q
    ||||||||||||||||||||||||||| ||||||| | || ||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||    
T  8935616 aaaatttgaaagcttcttcctcacttagaaaacaccgccctataaaaggttcaaaatcgttttcaatagtaattgcttcttgttcattgctactcaactc 8935715  T
Q  137 aactactccactttctgaattaccacttggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaacctacataaataaattgtaagc 236  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8935716 aactacttcactttctgaattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaacctacataaataaattgaaagc 8935815  T
Q  237 aggaaggttt 246  Q
    ||||||||||    
T  8935816 aggaaggttt 8935825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 374 - 510
Target Start/End: Original strand, 708979 - 709114
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||    
T  708979 gtattcaatcaaaacttttataaaatgtaaataaatcttgtggtattcaatcaagacaatcatgactttttt-ttgaggcaacaaaatccgttggtattc 709077  T
Q  474 aattgaaattccctacgacttatgaattgtctattgg 510  Q
    |||||||||| |  | |||||||||||||||||||||    
T  709078 aattgaaatttctcatgacttatgaattgtctattgg 709114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 374 - 510
Target Start/End: Original strand, 7100228 - 7100364
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||||| ||||||||| | |||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||    
T  7100228 gtattcaatcaagacttttataaaatctaaacaaatcttgtggtattcaatcaagacaatcatgactttttttttaaggcaacaaaatccgttggtattc 7100327  T
Q  474 aattgaaattccctacgacttatgaattgtctattgg 510  Q
    |||||| ||| |  | ||||||||||||||| |||||    
T  7100328 aattgagatttctcatgacttatgaattgtccattgg 7100364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 374 - 510
Target Start/End: Complemental strand, 8794402 - 8794266
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||||| ||||||||| | |||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||    
T  8794402 gtattcaatcaagacttttataaaatctaaacaaatcttgtggtattcaatcaagacaatcatgactttttttttaaggcaacaaaatccgttggtattc 8794303  T
Q  474 aattgaaattccctacgacttatgaattgtctattgg 510  Q
    |||||| ||| |  | ||||||||||||||| |||||    
T  8794302 aattgagatttctcatgacttatgaattgtccattgg 8794266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 374 - 510
Target Start/End: Original strand, 5957190 - 5957329
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaac---ttttttgttaaggcaacaaaatccgttggta 470  Q
    |||||||||||||| ||||||||| |||||| ||||||||||||||||||| ||||||||| | ||   |||||| ||||||||||||||||||||||||    
T  5957190 gtattcaatcaagacttttataaaatgtaaacaaatcttgtggtattcaattaagacaatcatgacttttttttttttaaggcaacaaaatccgttggta 5957289  T
Q  471 ttcaattgaaattccctacgacttatgaattgtctattgg 510  Q
    ||||||| | ||| |  | |||||||||||||||||||||    
T  5957290 ttcaattaagatttctcatgacttatgaattgtctattgg 5957329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 434
Target Start/End: Complemental strand, 10009653 - 10009598
Alignment:
Q  379 caatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatc 434  Q
    ||||||||||||||||| | | ||||||||||||||||||||||||||||| ||||    
T  10009653 caatcaagatttttatagaatataaataaatcttgtggtattcaatcaagataatc 10009598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 16150419 - 16150646
Alignment:
Q  19 ttttggcataattctcataaaatttgaaagcttcttcctcacttaaaaaacactgtccaataaaaggttcgaaatagttttcaatagtaattacttcttg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| |||| |||||||||||||||| |||||||    
T  16150419 ttttggcataattctcataaaatttgaaagcttcttcctcacttagaaaacactgccctataaaaggttcaaaatcgttttcaatagtaattgcttcttg 16150518  T
Q  119 ttcattgctactcaactcaactactccactttctgaattaccacttggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaaccta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16150519 ttcattgctactcaactcaactactccactttctgaattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaaccta 16150618  T
Q  219 cataaataaattgtaagcaggaaggttt 246  Q
    ||||||||||||| ||||||||||||||    
T  16150619 cataaataaattgaaagcaggaaggttt 16150646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 374 - 477
Target Start/End: Original strand, 2288523 - 2288625
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||||| ||||||||| |||||| ||||||||||||||||||| ||||||||| | |||||||| |||||||||||||||||||||||||||    
T  2288523 gtattcaatcaagacttttataaaatgtaaacaaatcttgtggtattcaattaagacaatcatgactttttt-ttaaggcaacaaaatccgttggtattc 2288621  T
Q  474 aatt 477  Q
    ||||    
T  2288622 aatt 2288625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 374 - 510
Target Start/End: Complemental strand, 15284552 - 15284412
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatc--gtaa--cttttttgttaaggcaacaaaatccgttggt 469  Q
    |||||||| ||||| ||||||||| |||||| ||||||||||||||||||| |||||||||  ||||   |||||| |||||||||||||||||||||||    
T  15284552 gtattcaaccaagacttttataaaatgtaaacaaatcttgtggtattcaattaagacaatcatgtaattttttttttttaaggcaacaaaatccgttggt 15284453  T
Q  470 attcaattgaaattccctacgacttatgaattgtctattgg 510  Q
    |||||||| | ||| |  | |||||||||||||||||||||    
T  15284452 attcaattaagatttctcatgacttatgaattgtctattgg 15284412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 374 - 477
Target Start/End: Complemental strand, 7488149 - 7488047
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    ||||| |||||||| |||||| || | |||||||||||||||||||||||||||||||||    |||||||| ||||| || |||||| |||||||||||    
T  7488149 gtattgaatcaagacttttatgaaatctaaataaatcttgtggtattcaatcaagacaattaagactttttt-ttaagacatcaaaattcgttggtattc 7488051  T
Q  474 aatt 477  Q
    ||||    
T  7488050 aatt 7488047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 374 - 477
Target Start/End: Complemental strand, 35172659 - 35172555
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgtt-aaggcaacaaaatccgttggtatt 472  Q
    ||||| |||||||| ||||||  | | |||||||||||||||||||||||||||||||||    |||||||| || ||| || |||||||||||||||||    
T  35172659 gtattgaatcaagacttttatggaatctaaataaatcttgtggtattcaatcaagacaattaagactttttttttcaagacatcaaaatccgttggtatt 35172560  T
Q  473 caatt 477  Q
    |||||    
T  35172559 caatt 35172555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 374 - 477
Target Start/End: Complemental strand, 21736625 - 21736522
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    ||||| |||||| | |||||| || | |||||||||||||| ||||||||||||||||||    |||||||| | ||| || ||||||||||||||||||    
T  21736625 gtattgaatcaatacttttatgaaatctaaataaatcttgttgtattcaatcaagacaatttagacttttttttcaagacatcaaaatccgttggtattc 21736526  T
Q  474 aatt 477  Q
    ||||    
T  21736525 aatt 21736522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 374 - 477
Target Start/End: Complemental strand, 36598487 - 36598385
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    ||||| |||||||| ||||||||| | ||||||||| ||||||||||||||||||| ||||   |||||||| | ||  |||| ||||||||||||||||    
T  36598487 gtatttaatcaagacttttataaaatttaaataaatattgtggtattcaatcaagataatcaagactttttt-taaatacaacgaaatccgttggtattc 36598389  T
Q  474 aatt 477  Q
    ||||    
T  36598388 aatt 36598385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 374 - 477
Target Start/End: Original strand, 37981686 - 37981788
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||| | ||||||||| | ||||||||| |||||||||||||| ||||||||| | | |||||| | || ||||  ||||||||||||||||    
T  37981686 gtattcaatcaaaacttttataaaatataaataaattttgtggtattcaattaagacaatcatga-ttttttttcaatgcaatgaaatccgttggtattc 37981784  T
Q  474 aatt 477  Q
    ||||    
T  37981785 aatt 37981788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 479
Target Start/End: Original strand, 16155474 - 16155578
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||| | ||||||||| | || |||||| |||||||||||||| ||||||||    |||||||| | || ||||| ||||||||||| ||||    
T  16155474 gtattcaatcaaaacttttataaaatttatataaattttgtggtattcaattaagacaattaagactttttt-tcaaagcaacgaaatccgttggcattc 16155572  T
Q  474 aattga 479  Q
    ||||||    
T  16155573 aattga 16155578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 475
Target Start/End: Complemental strand, 17330873 - 17330775
Alignment:
Q  375 tattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattca 474  Q
    |||||||||| || ||||| ||| | |||| |||||||| |||||||||||||||||||| | |||||||| |||||||| | ||||  |||||||||||    
T  17330873 tattcaatcacgaattttaaaaa-tataaacaaatcttgaggtattcaatcaagacaatcatgactttttt-ttaaggcagcgaaatatgttggtattca 17330776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 433
Target Start/End: Original strand, 16146884 - 16146943
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaat 433  Q
    |||||||||||||| ||||||||| | || |||||| |||||||||||||| ||||||||    
T  16146884 gtattcaatcaagacttttataaaatttatataaattttgtggtattcaattaagacaat 16146943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 479
Target Start/End: Complemental strand, 14920604 - 14920538
Alignment:
Q  413 gtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattcaattga 479  Q
    ||||||||||||||||||||||   |||||||| | ||  |||| ||||||||||||||||||||||    
T  14920604 gtggtattcaatcaagacaatcaagacttttttttaaatacaacgaaatccgttggtattcaattga 14920538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 22141602 - 22141655
Alignment:
Q  35 ataaaatttgaaagcttcttcctcacttaaaaaacactgtccaataaaaggttc 88  Q
    |||||||||| ||||||||| |||| ||| ||||||||| ||||||||||||||    
T  22141602 ataaaatttggaagcttctttctcatttagaaaacactgaccaataaaaggttc 22141655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 434
Target Start/End: Complemental strand, 18176489 - 18176429
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatc 434  Q
    |||||||||||||| |||||||||   |||||||||||  ||||||| |||||||||||||    
T  18176489 gtattcaatcaagacttttataaaacataaataaatctcatggtattgaatcaagacaatc 18176429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 424
Target Start/End: Original strand, 43022569 - 43022619
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaat 424  Q
    ||||| |||||||| ||||||| | |||||| |||||||||||||||||||    
T  43022569 gtattaaatcaagacttttatagaatgtaaagaaatcttgtggtattcaat 43022619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 3669718 - 3669771
Alignment:
Q  35 ataaaatttgaaagcttcttcctcacttaaaaaacactgtccaataaaaggttc 88  Q
    ||||||| || ||||||||| |||| ||| ||||||||| ||||||||||||||    
T  3669718 ataaaatctggaagcttctttctcatttagaaaacactgaccaataaaaggttc 3669771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 2085609 - 2085669
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatc 434  Q
    |||||||||||| | ||||||| | | | ||||||||||||| |||||||| |||||||||    
T  2085609 gtattcaatcaaaaattttatataatatgaataaatcttgtgatattcaattaagacaatc 2085669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 23301892 - 23301665
Alignment:
Q  19 ttttggcataattctcataaaatttgaaagcttcttcctcacttaaaaaacactgtccaataaaaggttcgaaatagttttcaatagtaattacttcttg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| || || ||||||||||| |||| |||||||||||||||| |||||||    
T  23301892 ttttggcataattctcataaaatttgaaagcttcttcctcacttagaaaacattgccctataaaaggttcaaaatcgttttcaatagtaattgcttcttg 23301793  T
Q  119 ttcattgctactcaactcaactactccactttctgaattaccacttggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaaccta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23301792 ttcattgctactcaactcaactactccactttctgaattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaaccta 23301693  T
Q  219 cataaataaattgtaagcaggaaggttt 246  Q
    ||||||||||||| ||||||||||||||    
T  23301692 cataaataaattgaaagcaggaaggttt 23301665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 374 - 510
Target Start/End: Complemental strand, 19007599 - 19007464
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| | | |||||||| |||||||||||||||||||||||||||    
T  19007599 gtattcaatcaagacttttataaaatgtaaacaaatcttgtggtattcaatcaagacaaacatgactttttt-ttaaggcaacaaaatccgttggtattc 19007501  T
Q  474 aattgaaattccctacgacttatgaattgtctattgg 510  Q
    |||||| ||| |  | |||||||||||||||||||||    
T  19007500 aattgagatttctcatgacttatgaattgtctattgg 19007464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 374 - 510
Target Start/End: Original strand, 48194654 - 48194790
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||||| ||||||||| | |||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||    
T  48194654 gtattcaatcaagacttttataaaatctaaacaaatcttgtggtattcaatcaagacaatcatgactttttttttaaggcaacaaaatccgttggtattc 48194753  T
Q  474 aattgaaattccctacgacttatgaattgtctattgg 510  Q
    |||||| ||| |  | ||||||||||||||| |||||    
T  48194754 aattgagatttctcatgacttatgaattgtccattgg 48194790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 374 - 504
Target Start/End: Original strand, 48203412 - 48203542
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||||| ||||||||| | |||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||    
T  48203412 gtattcaatcaagacttttataaaatataaacaaatcttgtggtattcaatcaagacaatcatgactttttttttaaggcaacaaaatccgttggtattc 48203511  T
Q  474 aattgaaattccctacgacttatgaattgtc 504  Q
    |||||| ||| |  | |||||||||||||||    
T  48203512 aattgagatttctcatgacttatgaattgtc 48203542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 46 - 230
Target Start/End: Complemental strand, 26926252 - 26926066
Alignment:
Q  46 aagcttcttcctcacttaaaaaacactgtccaataaaaggttcgaaatagttttcaata--gtaattacttcttgttcattgctactcaactcaactact 143  Q
    ||||||||||||||||||||||||| || |||||||||||||| ||| | ||||| |||  ||||||  ||| || || | | | ||||| |||| ||||    
T  26926252 aagcttcttcctcacttaaaaaacattgcccaataaaaggttcaaaacaattttcgatatagtaattgtttcctgctcgtcgttgctcaaatcaattact 26926153  T
Q  144 ccactttctgaattaccacttggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaacctacataaataaatt 230  Q
     || ||||||||||| ||| ||||| ||| ||||||| ||||||||||||||  |||| ||||| ||  |||||||| |||||||||    
T  26926152 tcattttctgaattatcacatggtttattatttggaacattgttcaaatcaattaaatctgtgactcctaacctacacaaataaatt 26926066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 374 - 479
Target Start/End: Original strand, 27198335 - 27198440
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||| | ||||||||| | |||||||||||||||||||||||| ||||||||| | | | |||| | |  ||||| |||||||||||||||     
T  27198335 gtattcaatcaaaacttttataaaatataaataaatcttgtggtattcaattaagacaatcatgattcttttttcagcgcaacgaaatccgttggtattg 27198434  T
Q  474 aattga 479  Q
    ||||||    
T  27198435 aattga 27198440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 374 - 444
Target Start/End: Complemental strand, 52179711 - 52179641
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttt 444  Q
    ||||||||| |||| ||||||||| | |||||||||||||||||||||||| ||||||||| ||| |||||    
T  52179711 gtattcaataaagacttttataaaatataaataaatcttgtggtattcaattaagacaatcataatttttt 52179641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 375 - 475
Target Start/End: Original strand, 4288998 - 4289098
Alignment:
Q  375 tattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattca 474  Q
    ||||||||||||| ||||||| | | |||||||||| |||||||||||||||||||||||   |||||||  | | |||||| |||| || |||||||||    
T  4288998 tattcaatcaagacttttatagaatataaataaatcatgtggtattcaatcaagacaatcaagactttttattcagggcaacgaaattcgatggtattca 4289097  T
Q  475 a 475  Q
    |    
T  4289098 a 4289098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 479
Target Start/End: Complemental strand, 14555331 - 14555226
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||||| ||||||||| | |||| |||  |||||||||||||| ||||||||| | |||||| | | | | |||| || ||||||| |||||    
T  14555331 gtattcaatcaagacttttataaaatataaaaaaaatttgtggtattcaattaagacaatcatgacttttatttcaggacaaccaattccgttgatattc 14555232  T
Q  474 aattga 479  Q
    ||||||    
T  14555231 aattga 14555226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 42657778 - 42657837
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatc 434  Q
    |||||||||||||| ||| ||||| | ||||||| |||||||||||||||| |||||||||    
T  42657778 gtattcaatcaagactttcataaaatataaataa-tcttgtggtattcaattaagacaatc 42657837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 434
Target Start/End: Complemental strand, 14229071 - 14229011
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatc 434  Q
    |||||||||||||| ||||||||| |  ||| |||||| |||||||| ||| |||||||||    
T  14229071 gtattcaatcaagacttttataaaatacaaagaaatctcgtggtattgaattaagacaatc 14229011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 39758044 - 39758100
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagac 430  Q
    ||||| |||||||| |||||| || | || ||||||||||||||||||||| |||||    
T  39758044 gtattgaatcaagacttttattaaatctatataaatcttgtggtattcaattaagac 39758100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 39763398 - 39763454
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagac 430  Q
    ||||| |||||||| |||||| || | || ||||||||||||||||||||| |||||    
T  39763398 gtattgaatcaagacttttattaaatctatataaatcttgtggtattcaattaagac 39763454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 43553600 - 43553660
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatc 434  Q
    |||| |||| |||| ||||||||| | |||||||||||||| ||||||||| | |||||||    
T  43553600 gtatacaattaagacttttataaaatttaaataaatcttgttgtattcaattacgacaatc 43553660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 434
Target Start/End: Complemental strand, 51826856 - 51826796
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatc 434  Q
    |||||||||||||| |||||||||   |||||||||||  || |||| |||||||||||||    
T  51826856 gtattcaatcaagacttttataaaacataaataaatctcatgatattgaatcaagacaatc 51826796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 375 - 510
Target Start/End: Complemental strand, 46037369 - 46037234
Alignment:
Q  375 tattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattca 474  Q
    ||||||||||||| ||||||||| |||||| |||||||||| |||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||    
T  46037369 tattcaatcaagacttttataaaatgtaaacaaatcttgtgatattcaatcaagacaatcatgactttttttttaaggcaacaaaatccgttggtattca 46037270  T
Q  475 attgaaattccctacgacttatgaattgtctattgg 510  Q
    ||||| ||| |  | |||||||||||||||||||||    
T  46037269 attgagatttctcatgacttatgaattgtctattgg 46037234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 401 - 485
Target Start/End: Original strand, 21067025 - 21067109
Alignment:
Q  401 taaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattcaattgaaattcc 485  Q
    ||||||||||||||||||||||||||||||||||   |||||||  | |||||||| ||||||| |||||||||||||| |||||    
T  21067025 taaataaatcttgtggtattcaatcaagacaatcaagactttttattaaaggcaacgaaatccggtggtattcaattgagattcc 21067109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 374 - 475
Target Start/End: Original strand, 41060049 - 41060150
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    ||||||||||||||||||||| || | ||||||||||||||||||||||||| ||| |||| | |||||||  | | |||||| ||||| | ||||||||    
T  41060049 gtattcaatcaagatttttattaaatataaataaatcttgtggtattcaatccagataatcatgactttttgttcagggcaacgaaatctggtggtattc 41060148  T
Q  474 aa 475  Q
    ||    
T  41060149 aa 41060150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 373 - 477
Target Start/End: Complemental strand, 9599086 - 9598982
Alignment:
Q  373 agtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtatt 472  Q
    ||||||||||||||| ||||||||| | |||||||||||||| ||||||||| |||| ||||  |||||| || |  | ||||| ||||||||| ||| |    
T  9599086 agtattcaatcaagaattttataaaatttaaataaatcttgttgtattcaattaagataatcaaaactttgttttcgatgcaacgaaatccgttagtagt 9598987  T
Q  473 caatt 477  Q
    |||||    
T  9598986 caatt 9598982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 373 - 477
Target Start/End: Complemental strand, 9826657 - 9826553
Alignment:
Q  373 agtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtatt 472  Q
    ||||||||||||||| ||||||||| | |||||||||||||| ||||||||| |||| ||||  |||||| || |  | ||||| ||||||||| ||| |    
T  9826657 agtattcaatcaagaattttataaaatttaaataaatcttgttgtattcaattaagataatcaaaactttgttttcgatgcaacgaaatccgttagtagt 9826558  T
Q  473 caatt 477  Q
    |||||    
T  9826557 caatt 9826553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 369 - 477
Target Start/End: Complemental strand, 12253416 - 12253308
Alignment:
Q  369 tttaagtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttgg 468  Q
    |||| ||||| |||||||| ||||||  | | |||||||||||| ||||||||||||||||||||    |||||||| | ||| || ||||||| |||||    
T  12253416 tttaggtattgaatcaagacttttatggaatctaaataaatcttatggtattcaatcaagacaattaagacttttttttcaagacatcaaaatctgttgg 12253317  T
Q  469 tattcaatt 477  Q
    |||||||||    
T  12253316 tattcaatt 12253308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 477
Target Start/End: Complemental strand, 37042583 - 37042480
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||||||||||||||| | ||||| ||| |||||||||||||| | |||||||  |  |||||| | || ||||| ||||||| | ||||||    
T  37042583 gtattcaatcaagatttttataaaatctaaattaattttgtggtattcaattatgacaatcaaattttttttttaaatgcaacgaaatccggtagtattc 37042484  T
Q  474 aatt 477  Q
    ||||    
T  37042483 aatt 37042480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 430
Target Start/End: Complemental strand, 46202569 - 46202513
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagac 430  Q
    |||||||||||||||||||||| | |  |||||||| ||||||||||||||||||||    
T  46202569 gtattcaatcaagatttttatagaataaaaataaattttgtggtattcaatcaagac 46202513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 433
Target Start/End: Original strand, 33474583 - 33474641
Alignment:
Q  375 tattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaat 433  Q
    |||| |||||||| ||||||  | | |||||||||||||||||||||||||||||||||    
T  33474583 tattgaatcaagacttttatggaatctaaataaatcttgtggtattcaatcaagacaat 33474641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 478
Target Start/End: Original strand, 48399776 - 48399857
Alignment:
Q  401 taaataaatcttgtggtattcaatcaagacaatcgtaacttttttgtt----aaggcaacaaaatccgttggtattcaattg 478  Q
    |||| ||||||||||||| ||||||||||||||||  |||||||| ||    |||||||  ||||||| |||||||||||||    
T  48399776 taaaaaaatcttgtggtaatcaatcaagacaatcgagactttttttttattaaaggcaaagaaatccggtggtattcaattg 48399857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 431
Target Start/End: Complemental strand, 26201582 - 26201525
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagaca 431  Q
    ||||||| |||||| ||||||||| | |||||||||||  ||| ||||||||||||||    
T  26201582 gtattcattcaagacttttataaaatataaataaatctcatgggattcaatcaagaca 26201525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 427
Target Start/End: Original strand, 3634278 - 3634330
Alignment:
Q  375 tattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaa 427  Q
    ||||||||||||| ||||||||| | ||| ||||| || ||||||||||||||    
T  3634278 tattcaatcaagacttttataaaatataagtaaattttatggtattcaatcaa 3634330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 374 - 510
Target Start/End: Original strand, 38230836 - 38230972
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||||| ||||||||| | |||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||    
T  38230836 gtattcaatcaagacttttataaaatttaaacaaatcttgtggtattcaatcaagacaatcatgactttttttttaaggcaacaaaatccgttggtattc 38230935  T
Q  474 aattgaaattccctacgacttatgaattgtctattgg 510  Q
    |||||| ||| |  | ||||||||||||||| |||||    
T  38230936 aattgagatttctcatgacttatgaattgtccattgg 38230972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 374 - 477
Target Start/End: Original strand, 42314963 - 42315066
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    ||||| |||||||||||||||  | | |||||||||||||||||||||||| ||||||||   ||||||||| | ||| || ||||||||||||||||||    
T  42314963 gtattgaatcaagatttttatggaatctaaataaatcttgtggtattcaatgaagacaataaaaacttttttttcaagacatcaaaatccgttggtattc 42315062  T
Q  474 aatt 477  Q
    ||||    
T  42315063 aatt 42315066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 376 - 477
Target Start/End: Original strand, 53594152 - 53594253
Alignment:
Q  376 attcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattcaa 475  Q
    |||||||||| | ||||||||| | |||||||||||||||||||||||| || |||||||| | |||||| | || ||||  ||||||||||||||||||    
T  53594152 attcaatcaaaaattttataaaatataaataaatcttgtggtattcaattaaaacaatcgtgatttttttttcaatgcaatgaaatccgttggtattcaa 53594251  T
Q  476 tt 477  Q
    ||    
T  53594252 tt 53594253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 374 - 477
Target Start/End: Complemental strand, 28100602 - 28100499
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||||| ||||||||| | |||||||||||| |||||||||||||||||||||   ||||||||   || | ||| |||||||||| |||||    
T  28100602 gtattcaatcaagacttttataaaatataaataaatcttatggtattcaatcaagacaatcaagactttttttacaatgtaacgaaatccgttgatattc 28100503  T
Q  474 aatt 477  Q
    ||||    
T  28100502 aatt 28100499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 375 - 475
Target Start/End: Original strand, 53271974 - 53272074
Alignment:
Q  375 tattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattca 474  Q
    ||||||||||||| ||||||| | | ||||||||| ||||||||||||||||||||||||   |||||||  | | |||||| ||||||| |||||||||    
T  53271974 tattcaatcaagacttttatataatataaataaatattgtggtattcaatcaagacaatcaagactttttattcagggcaacgaaatccggtggtattca 53272073  T
Q  475 a 475  Q
    |    
T  53272074 a 53272074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 374 - 445
Target Start/End: Complemental strand, 37370907 - 37370836
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaactttttt 445  Q
    |||||||||||| | ||||||||| | |||||||||||||||||||||||| ||||||||| | ||||||||    
T  37370907 gtattcaatcaaaacttttataaaatataaataaatcttgtggtattcaattaagacaatcatgactttttt 37370836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 479
Target Start/End: Complemental strand, 28847122 - 28847017
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||| | |||||| || || ||||||||||||||||||||||| ||||||||| | |||||||  | | ||| |  |||||||| |||||||    
T  28847122 gtattcaatcaaaacttttatgaaatgaaaataaatcttgtggtattcaattaagacaatcatgactttttgttcagggccatgaaatccgtcggtattc 28847023  T
Q  474 aattga 479  Q
    ||||||    
T  28847022 aattga 28847017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 374 - 433
Target Start/End: Original strand, 20538995 - 20539055
Alignment:
Q  374 gtattcaatcaaga-tttttataaagtgtaaataaatcttgtggtattcaatcaagacaat 433  Q
    |||||||||||||| |||||| ||| | |||||||||||||||||||||||||||||||||    
T  20538995 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaat 20539055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 44646785 - 44646841
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagac 430  Q
    |||||||||||||| |||||||||   |||||||||||| |||||||||||||||||    
T  44646785 gtattcaatcaagacttttataaaacataaataaatcttatggtattcaatcaagac 44646841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 424
Target Start/End: Complemental strand, 1848547 - 1848497
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaat 424  Q
    ||||| |||||||| ||||||||| | ||||||||||||||||||||||||    
T  1848547 gtatttaatcaagacttttataaaatataaataaatcttgtggtattcaat 1848497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 374 - 435
Target Start/End: Complemental strand, 36094329 - 36094268
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcg 435  Q
    ||||||||||||||||||||||||   ||||||||| || || ||||||||||| |||||||    
T  36094329 gtattcaatcaagatttttataaaacataaataaatattatgatattcaatcaatacaatcg 36094268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 16653318 - 16653378
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatc 434  Q
    |||||||||||||| ||||||||| | || |||||| |||| ||||||||| |||||||||    
T  16653318 gtattcaatcaagaattttataaaatatacataaattttgttgtattcaattaagacaatc 16653378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 477
Target Start/End: Original strand, 56397534 - 56397610
Alignment:
Q  401 taaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattcaatt 477  Q
    ||||||||| ||||||||||||||||| ||||     |||||||| | ||| || ||||||||||||||||||||||    
T  56397534 taaataaattttgtggtattcaatcaaaacaactaagacttttttttcaagacatcaaaatccgttggtattcaatt 56397610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 41762043 - 41762104
Alignment:
Q  374 gtattcaatcaaga-tttttataaagtgtaaataaatcttgtggtattcaatcaagacaatc 434  Q
    ||||| |||||||| |||||||||| | ||||||| |||||||||||||||  |||||||||    
T  41762043 gtattgaatcaagactttttataaaatataaataagtcttgtggtattcaactaagacaatc 41762104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 27529143 - 27529203
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatc 434  Q
    ||||||||||| || |||||| || | |||  ||||||||||||||||||| |||||||||    
T  27529143 gtattcaatcatgacttttatgaaatataagaaaatcttgtggtattcaattaagacaatc 27529203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 374 - 509
Target Start/End: Complemental strand, 2276225 - 2276090
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||| || |||||| | | |||||| ||||||||||||||| |||||||||||    
T  2276225 gtattcaatcaagacttttataaaatgtaaataaatcttgtggtattcaattaaaacaatcatgattttttttttaaggcaacaaaattcgttggtattc 2276126  T
Q  474 aattgaaattccctacgacttatgaattgtctattg 509  Q
    |||| ||||| |  | ||||||||||||||||||||    
T  2276125 aattaaaatttctcatgacttatgaattgtctattg 2276090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 374 - 477
Target Start/End: Complemental strand, 28594462 - 28594358
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgtt-aaggcaacaaaatccgttggtatt 472  Q
    ||||||||||||||||||||||||   |||||||||||||||||||| ||| ||||||||| | |||||||| || ||  |||| |||||||||||||||    
T  28594462 gtattcaatcaagatttttataaaacataaataaatcttgtggtatttaattaagacaatcatgactttttttttcaatacaacgaaatccgttggtatt 28594363  T
Q  473 caatt 477  Q
    |||||    
T  28594362 caatt 28594358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 374 - 477
Target Start/End: Complemental strand, 26806596 - 26806493
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||||| ||||||||| | |||||||||||||| ||||||||| |||||||||   |||||||| | || ||||| |||||| |||||||||    
T  26806596 gtattcaatcaagacttttataaaatataaataaatcttgtagtattcaattaagacaatcaagacttttttttcaatgcaacgaaatccattggtattc 26806497  T
Q  474 aatt 477  Q
    ||||    
T  26806496 aatt 26806493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 374 - 477
Target Start/End: Complemental strand, 26795532 - 26795429
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||| | ||||||||| | |||||||||||||| ||||||||| |||||||||   |||||||| | || ||||| |||||| |||||||||    
T  26795532 gtattcaatcaaaacttttataaaatataaataaatcttgtagtattcaattaagacaatcaagacttttttttcaatgcaacgaaatccattggtattc 26795433  T
Q  474 aatt 477  Q
    ||||    
T  26795432 aatt 26795429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 374 - 479
Target Start/End: Original strand, 378297 - 378402
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||||| || |||||| | |||||||||||||| |||||||||||| ||||||   |||||||| | ||| |||| ||||  ||||||||||    
T  378297 gtattcaatcaagacttctataaaatctaaataaatcttgtagtattcaatcaaaacaatcaagacttttttttcaagacaacgaaatatgttggtattc 378396  T
Q  474 aattga 479  Q
    ||||||    
T  378397 aattga 378402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 374 - 475
Target Start/End: Original strand, 39753499 - 39753600
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||||| ||||||||| | |||| |||||||||| |||||||||||||||||| | |||||| | | | |||||| || ||| |||||||||    
T  39753499 gtattcaatcaagacttttataaaatataaaaaaatcttgtgatattcaatcaagacaatcatgacttttatttcagggcaaccaattccattggtattc 39753598  T
Q  474 aa 475  Q
    ||    
T  39753599 aa 39753600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 374 - 477
Target Start/End: Complemental strand, 3604473 - 3604370
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    ||||| |||||| | |||||| || | |||||||||||||||||||||||||||||||||    |||||||  | ||| || ||||||||||||||||||    
T  3604473 gtattgaatcaaaacttttatgaaatctaaataaatcttgtggtattcaatcaagacaattaagactttttattcaagacatcaaaatccgttggtattc 3604374  T
Q  474 aatt 477  Q
    ||||    
T  3604373 aatt 3604370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 374 - 424
Target Start/End: Complemental strand, 26795653 - 26795603
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaat 424  Q
    |||||||||||||| ||||||||| | ||||||||||||||||||||||||    
T  26795653 gtattcaatcaagacttttataaaatataaataaatcttgtggtattcaat 26795603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 375 - 424
Target Start/End: Complemental strand, 26806716 - 26806667
Alignment:
Q  375 tattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaat 424  Q
    ||||||||||||| ||||||||| | ||||||||||||||||||||||||    
T  26806716 tattcaatcaagacttttataaaatataaataaatcttgtggtattcaat 26806667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 374 - 479
Target Start/End: Complemental strand, 9689356 - 9689260
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||||||||||||||| | ||||||||||||         ||| ||||||||| ||| | |||| | || ||||| ||||||||||||||||    
T  9689356 gtattcaatcaagatttttataaaatataaataaatctt---------aattaagacaatcataattcttttttcaatgcaacgaaatccgttggtattc 9689266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 445
Target Start/End: Original strand, 27786295 - 27786339
Alignment:
Q  401 taaataaatcttgtggtattcaatcaagacaatcgtaactttttt 445  Q
    |||||||||||||||||||||||| ||||||||| | ||||||||    
T  27786295 taaataaatcttgtggtattcaattaagacaatcatgactttttt 27786339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 434
Target Start/End: Complemental strand, 40460587 - 40460537
Alignment:
Q  384 aagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatc 434  Q
    |||| ||||||| | | ||||||||| ||||||||||||||||||||||||    
T  40460587 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatc 40460537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 375 - 510
Target Start/End: Original strand, 44701609 - 44701742
Alignment:
Q  375 tattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattca 474  Q
    ||||||||||||| ||||||||| |||||| |||||||||||||||||||||| |||||| | |||||||  |||||||||||||||| |||||||||||    
T  44701609 tattcaatcaagacttttataaaatgtaaacaaatcttgtggtattcaatcaaaacaatcatgacttttt--ttaaggcaacaaaatctgttggtattca 44701706  T
Q  475 attgaaattccctacgacttatgaattgtctattgg 510  Q
    ||||| ||| |  | || ||||||||||||||||||    
T  44701707 attgagatttctaatgatttatgaattgtctattgg 44701742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 373 - 477
Target Start/End: Complemental strand, 45926966 - 45926862
Alignment:
Q  373 agtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtatt 472  Q
    ||||||||||||||| || |||||| | |||||||||||||||||||||||| ||||||||| | || ||||| | ||  |||| |||||||||||||||    
T  45926966 agtattcaatcaagacttctataaaatataaataaatcttgtggtattcaattaagacaatcatgacatttttttcaatacaacgaaatccgttggtatt 45926867  T
Q  473 caatt 477  Q
    |||||    
T  45926866 caatt 45926862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 374 - 477
Target Start/End: Complemental strand, 10104913 - 10104810
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||| | ||||||||| | |||||||||||||| ||||||||| |||||||||   |||||||| | || ||||| |||||| |||||||||    
T  10104913 gtattcaatcaaaacttttataaaatataaataaatcttgtagtattcaattaagacaatcaagacttttttttcaatgcaacgaaatccattggtattc 10104814  T
Q  474 aatt 477  Q
    ||||    
T  10104813 aatt 10104810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 374 - 477
Target Start/End: Complemental strand, 10216060 - 10215958
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||| | ||||||||| | |||||||||||||||||||||||| ||||||| |  ||||||||| | || ||||| |||||| |||||||||    
T  10216060 gtattcaatcaaaacttttataaaatataaataaatcttgtggtattcaattaagacaagcaaaactttttt-tcaatgcaacgaaatccattggtattc 10215962  T
Q  474 aatt 477  Q
    ||||    
T  10215961 aatt 10215958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 374 - 477
Target Start/End: Complemental strand, 10225689 - 10225587
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    |||||||||||||| ||||||||| | |||||||||||||| ||||||||| |||||||||   |||||||| | || ||||| |||||| |||||||||    
T  10225689 gtattcaatcaagacttttataaaatataaataaatcttgtagtattcaattaagacaatcaagactttttt-tcaatgcaacgaaatccattggtattc 10225591  T
Q  474 aatt 477  Q
    ||||    
T  10225590 aatt 10225587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 374 - 434
Target Start/End: Complemental strand, 44042065 - 44042005
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatc 434  Q
    |||||||||||||| ||||||| | | |||||||||||||||||||||||| |||||||||    
T  44042065 gtattcaatcaagacttttatagaatataaataaatcttgtggtattcaattaagacaatc 44042005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 445
Target Start/End: Complemental strand, 12103422 - 12103351
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaactttttt 445  Q
    |||||||||| ||||||||||  | | |||||||||||||| ||||||||||||||||||| | ||||||||    
T  12103422 gtattcaatctagatttttattgaatataaataaatcttgtagtattcaatcaagacaatcatgactttttt 12103351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 380 - 477
Target Start/End: Original strand, 85820 - 85918
Alignment:
Q  380 aatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgtt-aaggcaacaaaatccgttggtattcaatt 477  Q
    |||||||||||||||  | | ||||||||||||||| |||||||||||||||||    | |||||| || ||| || ||||||||||||||||||||||    
T  85820 aatcaagatttttatggaatctaaataaatcttgtgatattcaatcaagacaattaagattttttttttcaagacatcaaaatccgttggtattcaatt 85918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 373 - 423
Target Start/End: Complemental strand, 10055805 - 10055755
Alignment:
Q  373 agtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaa 423  Q
    ||||||||||||||| ||||||||| | |||||||||||||||||||||||    
T  10055805 agtattcaatcaagacttttataaaatataaataaatcttgtggtattcaa 10055755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 374 - 424
Target Start/End: Complemental strand, 10105034 - 10104984
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaat 424  Q
    |||||||||||||| ||||||||| | ||||||||||||||||||||||||    
T  10105034 gtattcaatcaagacttttataaaatataaataaatcttgtggtattcaat 10104984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 375 - 424
Target Start/End: Complemental strand, 10225809 - 10225760
Alignment:
Q  375 tattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaat 424  Q
    ||||||||||||| ||||||||| | ||||||||||||||||||||||||    
T  10225809 tattcaatcaagacttttataaaatataaataaatcttgtggtattcaat 10225760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 477
Target Start/End: Original strand, 46749321 - 46749417
Alignment:
Q  380 aatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattcaatt 477  Q
    |||||||| ||||||||| | |||||||||||| ||||||||||| |||||||||  |  |||||| | || ||||| |||||||||| |||||||||    
T  46749321 aatcaagacttttataaaatataaataaatcttatggtattcaattaagacaatc-aagattttttttcaatgcaacgaaatccgttgatattcaatt 46749417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 424
Target Start/End: Complemental strand, 10216181 - 10216131
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaat 424  Q
    |||||||||||||| ||||||||| | |||||||||||||| |||||||||    
T  10216181 gtattcaatcaagacttttataaaatataaataaatcttgtcgtattcaat 10216131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 477
Target Start/End: Original strand, 23697070 - 23697174
Alignment:
Q  375 tattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgtt--aaggcaacaaaatccgttggtatt 472  Q
    |||| |||||||| ||||||  | | |||||||||| ||||||||||||||||||||||    |||||||| ||  ||| || ||||||||||| |||||    
T  23697070 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagacttttttttttcaagacatcaaaatccgtttgtatt 23697169  T
Q  473 caatt 477  Q
    |||||    
T  23697170 caatt 23697174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 433
Target Start/End: Original strand, 23715525 - 23715583
Alignment:
Q  375 tattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaat 433  Q
    |||| |||||||| ||||||  | | |||||||||| ||||||||||||||||||||||    
T  23715525 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaat 23715583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 433
Target Start/End: Original strand, 23733981 - 23734039
Alignment:
Q  375 tattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaat 433  Q
    |||| |||||||| ||||||  | | |||||||||| ||||||||||||||||||||||    
T  23733981 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaat 23734039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 433
Target Start/End: Original strand, 23752439 - 23752497
Alignment:
Q  375 tattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaat 433  Q
    |||| |||||||| ||||||  | | |||||||||| ||||||||||||||||||||||    
T  23752439 tattgaatcaagacttttattgaatttaaataaatcatgtggtattcaatcaagacaat 23752497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 426
Target Start/End: Complemental strand, 34292525 - 34292472
Alignment:
Q  373 agtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatca 426  Q
    ||||||||||||||||||||||  | | | ||||||| ||||||||||||||||    
T  34292525 agtattcaatcaagatttttattgaattttaataaattttgtggtattcaatca 34292472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 434
Target Start/End: Complemental strand, 45215421 - 45215361
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatc 434  Q
    |||||||||||| | |||||||||   |||||||||||  ||||||| |||||||||||||    
T  45215421 gtattcaatcaaaacttttataaaacataaataaatctcatggtattgaatcaagacaatc 45215361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 14061610 - 14061670
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatc 434  Q
    |||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  14061610 gtattcaatcaagatttttatagaatataaataaatcttgtggtattcaatcaagacaatc 14061670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 1000601 - 1000677
Alignment:
Q  154 aattaccacttggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaacctacataaataaatt 230  Q
    ||||| ||| ||||| ||| ||||||||||||||||||||||  |||||||||| |||||||||||| |||||||||    
T  1000601 aattatcacatggtttattatttggaagattgttcaaatcaattaaatttgtgactctcaacctacacaaataaatt 1000677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 374 - 477
Target Start/End: Original strand, 43488970 - 43489073
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    ||||| |||||||| ||||||  | | |||||||||||||| ||||||||||||||||||    |||||||| | ||| || ||||||||||||||||||    
T  43488970 gtattgaatcaagacttttatggaatctaaataaatcttgtagtattcaatcaagacaattaagacttttttttcaagacatcaaaatccgttggtattc 43489069  T
Q  474 aatt 477  Q
    ||||    
T  43489070 aatt 43489073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 42366114 - 42366170
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagac 430  Q
    |||||||||||| | ||||||||| | | |||||||| |||||||||||||||||||    
T  42366114 gtattcaatcaaaacttttataaaatctgaataaatcatgtggtattcaatcaagac 42366170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 24317975 - 24318035
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatc 434  Q
    |||||||||||||| ||||||| | | ||||| |||||||||||| ||||| ||| |||||    
T  24317975 gtattcaatcaagacttttatataatataaattaatcttgtggtactcaattaaggcaatc 24318035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 477
Target Start/End: Complemental strand, 1905 - 1802
Alignment:
Q  374 gtattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaagacaatcgtaacttttttgttaaggcaacaaaatccgttggtattc 473  Q
    ||||||||| ||||||||||| ||   |||||||||||| | |||||||||||||||||||  ||||||||  | | |||||| ||||||  ||||||||    
T  1905 gtattcaattaagatttttatgaaacataaataaatcttatagtattcaatcaagacaatcaaaactttttattgagggcaaccaaatcccatggtattc 1806  T
Q  474 aatt 477  Q
    ||||    
T  1805 aatt 1802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 427
Target Start/End: Complemental strand, 11807 - 11755
Alignment:
Q  375 tattcaatcaagatttttataaagtgtaaataaatcttgtggtattcaatcaa 427  Q
    ||||||||||||| ||||||||| | ||| ||||| || ||||||||||||||    
T  11807 tattcaatcaagacttttataaaatataagtaaattttatggtattcaatcaa 11755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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