View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13960_high_11 (Length: 309)
Name: NF13960_high_11
Description: NF13960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13960_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 3713814 - 3713688
Alignment:
| Q |
15 |
atataataaagtgtactacttccgagtgtatctttttcaaacttcacagtttgaacactgtgttctgtatcatgcagcaaaatagtacactctagtactc |
114 |
Q |
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| T |
3713814 |
atataataaagtgtactacctccgagtgtatctttttcaaacttcacagtttgaacactgtgttctgtatcatgcagcaaaatagtacactctagtactc |
3713715 |
T |
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| Q |
115 |
cacactcttccccaaaaacagcgcgtg |
141 |
Q |
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| T |
3713714 |
cacactcttccccaaaaacagcgcgtg |
3713688 |
T |
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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 240 - 309
Target Start/End: Complemental strand, 3713580 - 3713511
Alignment:
| Q |
240 |
cacaatctttctctctcctttctctgtcttctgcaaaaccacattcacactctcaagtaaagttctctac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3713580 |
cacaatctttctctctcctttctctgtcttctgcaaaaccacattcacactctcaagtaaagttctctac |
3713511 |
T |
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