View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13960_high_12 (Length: 288)
Name: NF13960_high_12
Description: NF13960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13960_high_12 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 17738726 - 17739008
Alignment:
| Q |
1 |
ttcttatatttctctaattaaatggatatgcttgtcaaacaaatcaagtctagtttggatgatgaaaaagccagttctcatgcaacaatcacatttttca |
100 |
Q |
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| T |
17738726 |
ttcttatatttctctaattaaatgcatatgcttgtcaaacaaatcaagtctagtttggatgattaaaaagccagttctcatgcaacaatcacatttttta |
17738825 |
T |
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| Q |
101 |
ttagaatttggtaaatttcaaccaatttaaacaaattaataatgttaagatttgtgtaagtaaatgcaatcttttgagaatataaataagatgtaaagta |
200 |
Q |
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| T |
17738826 |
ttagaatttggtaaatttcaaccaatttaaacaaattaataatgttaagatttgtgtaagtaaatgcaatattttgagaatataaataagatgtaaagta |
17738925 |
T |
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| Q |
201 |
ataatagcatttgaggatttgagaatataaacaacatgcaatcttttgtgtaagtaagctaattctaattactacagcctatg |
283 |
Q |
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| T |
17738926 |
ataatagaatttgaggatttgagaatataaacaagatgcaatcttttgtgtaagtaagctaattctaattactacagcctatg |
17739008 |
T |
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Target: scaffold0024 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 143480 - 143608
Alignment:
| Q |
73 |
agttctcatgcaacaatcacatttttcattagaatttggtaaatttcaaccaatttaaacaaattaataatgttaagatttgtgtaagtaaatgcaatct |
172 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||| ||||||||||| ||||| |
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| T |
143480 |
agttctcatgcaataatcacatttttcattagaaattggtaaatt----------taaacaaattaataattataagatttgagtaagtaaatggaatct |
143569 |
T |
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| Q |
173 |
tttgagaatataaataagatgtaaagtaataatagcatt |
211 |
Q |
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| T |
143570 |
tttgagaatatctataagatttaaaataataatagcatt |
143608 |
T |
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