View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13960_high_19 (Length: 239)
Name: NF13960_high_19
Description: NF13960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13960_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 42485540 - 42485752
Alignment:
| Q |
12 |
atgaacctgcggcgcgattgtgcatcacgctcccagttagagatgatggagaaggacaggttaatggtaatagcatggttgcaaatcaaactcacgtggc |
111 |
Q |
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| T |
42485540 |
atgaacctgcggcgcgattgtgcatcacgctcccagttagagatgatggagaaggacaggttaatggtaatagcatggttgcaaatcaaactcacgtggc |
42485639 |
T |
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| Q |
112 |
tatctcatttaatgattcttctatacatttattggattttagtgtacagtaatatttgaataagctcaagcatttatcccattatagagtgtttttagga |
211 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42485640 |
tatatcatttaatgattcttctatacatttattggattttagtgtacagtaatatttgaataagctcaagcatttatcccattatagagtatttttagga |
42485739 |
T |
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| Q |
212 |
gaggatgattact |
224 |
Q |
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||||||||||||| |
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| T |
42485740 |
gaggatgattact |
42485752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 103 - 207
Target Start/End: Complemental strand, 7147327 - 7147223
Alignment:
| Q |
103 |
tcacgtggctatctcatttaatgattcttctatacatttattggattttagtgtacagtaatatttgaataagctcaagcatttatcccattatagagtg |
202 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||||| |
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| T |
7147327 |
tcacgtggctatctcatttaatgactcttctatacatttattggattttagtgtacaataacatttgaataagcacaaacatttatcccattatagagta |
7147228 |
T |
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| Q |
203 |
ttttt |
207 |
Q |
| |
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||||| |
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| T |
7147227 |
ttttt |
7147223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 69
Target Start/End: Complemental strand, 7147362 - 7147331
Alignment:
| Q |
38 |
acgctcccagttagagatgatggagaaggaca |
69 |
Q |
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| T |
7147362 |
acgctcccagttagagatgatggagaaggaca |
7147331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 36627546 - 36627695
Alignment:
| Q |
38 |
acgctcccagttagagatgatggagaaggacaggttaatggtaatagcatggttgcaaatcaaactcacgtggctatctcatttaatgattcttctatac |
137 |
Q |
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|||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36627546 |
acgctcccagttagagatgatggagaagcacaagttcatggtaatagcatggttgctaatcaaactcacgtggctatctcatt----------------- |
36627628 |
T |
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| Q |
138 |
atttattggattttagtgtacagtaatatttgaataagctcaagcatttatcccattatagagtgttttt |
207 |
Q |
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| T |
36627629 |
---tattggattttagtgtacagtaacatttgaataagcacaagcatttatcgcataatagagtattttt |
36627695 |
T |
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