View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13960_high_7 (Length: 368)
Name: NF13960_high_7
Description: NF13960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13960_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 12 - 349
Target Start/End: Original strand, 2192862 - 2193199
Alignment:
| Q |
12 |
gaagaataaattgagaggattgtttccttatctatggtttctgcagaaaaggggaaacctcaaattggaaaacccaagaacaaaagcttgtgagcagaat |
111 |
Q |
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| T |
2192862 |
gaagaataaattgagaggattgtttccttatatatggtttctgcagaaaaggggaaacctcaaattggaaaacccaagaacaaaaccttgtgagcagaat |
2192961 |
T |
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| Q |
112 |
ttgtgcgcttcttgtttcaattgcagcgaggttacagagcacagccatcggaatcagtgagaaaacatcctccataaaaatagattaaggtattgatttt |
211 |
Q |
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| T |
2192962 |
ttgtgcgcttcttgtttcaattgcagcgaggttacagagcacagccatcggaatcagcgagaaaacatcctccataaaaatagattaaggtattgatttt |
2193061 |
T |
|
| Q |
212 |
tgttcatgacttttacaactgaaaaataataacttcaatcaaatctaagcacctcaaagcctatgtcataactgtcaacgggtttctgcaaaataataac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2193062 |
tgttcatgacttttacaactgaaaaataataacttcaatcaaatctaagcacctcaaagcctatgtcataactgtcaacgggtttctgcaaaataataac |
2193161 |
T |
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| Q |
312 |
ctcaatcataccaaaatacttcatctacaataataata |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
2193162 |
ctcaatcataccaaaatacttcatctacaataataata |
2193199 |
T |
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