View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13960_low_10 (Length: 319)
Name: NF13960_low_10
Description: NF13960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13960_low_10 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 7024831 - 7024520
Alignment:
| Q |
8 |
ataattctgctgaactatgataggtacgtgcatatacaccaaagagggtgtttcaagatctagaagtagcgaaagacgagtacattcgagctactttagg |
107 |
Q |
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| T |
7024831 |
ataattctgatgaactatgataggtacgtgcatatacaccaaagagggtgtttcaagatctagaagtagcgaaagacgagtacattcgagctactttagg |
7024732 |
T |
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| Q |
108 |
cgtacgaaaggaccaaaaaatacttctaccgaagcttgttgaatcattcgcaaaagactcggatttgtgtcctagtggtgtcatggatatgatcctagaa |
207 |
Q |
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| T |
7024731 |
cgtacgaaaggaccaaaaaatacttctaccgaagcttgttgaatcattcgcaaaagactcggatttgtgtcctagtggtgtcatggatatgatcctagaa |
7024632 |
T |
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| Q |
208 |
tctctacctgaatcactaaggaaaagagttaagaaatgtcagattccaaaatccaagaagtgcatagaatggattccacataacttcaattttagatatc |
307 |
Q |
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| T |
7024631 |
cctctacctgaatcactaaggaaaagagttaagaaatgtcagattccaaaatccaagaagtgcatagaatggattccacataacttcaattttagatatc |
7024532 |
T |
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| Q |
308 |
tcatatctaagg |
319 |
Q |
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| T |
7024531 |
tcatatctaagg |
7024520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 319
Target Start/End: Original strand, 33553811 - 33554104
Alignment:
| Q |
23 |
tatgataggtacgtgcatatacaccaaagagggtgtttcaagatctagaagtagcgaaagacgagtacattcgagctactttaggcgtacgaaaggacca |
122 |
Q |
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| T |
33553811 |
tatgacaggtgcgtgtatatacaccgaagagagtgtttcaagaactagaggttgcaaaggaagagtacattagagccacgtttgggatacgcaaggacca |
33553910 |
T |
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| Q |
123 |
aaaaatacttctaccgaagcttgttgaatcattcgcaaaagactcggatttgtgtcctagtggtgtcatggatatgatcctagaatctctacctgaatca |
222 |
Q |
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| T |
33553911 |
aaaaatgctgcttcctaagattgtagatacattctccaaagattcaggtttgtctcatgctggtcttatagagatgatccaacagtctctacctgaatcc |
33554010 |
T |
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| Q |
223 |
ctaaggaaaagagttaagaaatgtcagattccaaaatccaagaagtgcatagaatggattccacataacttcaattttagatatctcatatctaagg |
319 |
Q |
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| T |
33554011 |
ctgagaaagagtgttaagaaatgtca---tgcaaaatccgggaagagcatagaatggattccacacaacttcacttttcgatacctgatacctaagg |
33554104 |
T |
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