View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13960_low_17 (Length: 244)

Name: NF13960_low_17
Description: NF13960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13960_low_17
NF13960_low_17
[»] chr7 (26 HSPs)
chr7 (11-226)||(17150955-17151171)
chr7 (79-229)||(6461374-6461525)
chr7 (35-161)||(13487797-13487923)
chr7 (79-203)||(26427076-26427201)
chr7 (109-226)||(9128916-9129034)
chr7 (70-167)||(17492834-17492930)
chr7 (70-167)||(17560284-17560380)
chr7 (118-174)||(6210572-6210628)
chr7 (117-226)||(14278124-14278235)
chr7 (117-163)||(14252960-14253006)
chr7 (109-225)||(16093248-16093368)
chr7 (118-218)||(39293368-39293470)
chr7 (117-163)||(45148081-45148127)
chr7 (119-164)||(12246471-12246516)
chr7 (109-225)||(14280053-14280169)
chr7 (118-226)||(14974187-14974295)
chr7 (118-226)||(15403663-15403771)
chr7 (89-161)||(16436377-16436448)
chr7 (118-226)||(16064989-16065100)
chr7 (117-163)||(19066112-19066158)
chr7 (65-161)||(3172131-3172227)
chr7 (118-163)||(44306898-44306943)
chr7 (120-164)||(13460837-13460881)
chr7 (118-191)||(15755929-15756003)
chr7 (117-161)||(4072210-4072254)
chr7 (121-161)||(8325449-8325489)
[»] chr3 (27 HSPs)
chr3 (34-229)||(25486948-25487144)
chr3 (65-226)||(17385285-17385447)
chr3 (11-169)||(6808907-6809066)
chr3 (70-225)||(21094199-21094353)
chr3 (118-224)||(11401014-11401122)
chr3 (70-158)||(19978341-19978429)
chr3 (11-163)||(2547951-2548107)
chr3 (94-169)||(9637699-9637774)
chr3 (89-159)||(13438556-13438625)
chr3 (117-163)||(54040204-54040250)
chr3 (117-163)||(54049491-54049537)
chr3 (89-156)||(8022757-8022823)
chr3 (117-202)||(31413907-31413994)
chr3 (44-161)||(10724981-10725098)
chr3 (117-163)||(15551124-15551170)
chr3 (118-226)||(25105582-25105692)
chr3 (118-163)||(17391838-17391883)
chr3 (118-221)||(8853547-8853651)
chr3 (79-162)||(27050238-27050320)
chr3 (126-164)||(8603171-8603209)
chr3 (117-163)||(17760063-17760109)
chr3 (117-163)||(19061383-19061429)
chr3 (12-159)||(19633324-19633473)
chr3 (89-155)||(12254386-12254451)
chr3 (118-164)||(21764245-21764291)
chr3 (122-160)||(25606936-25606974)
chr3 (118-151)||(21765306-21765339)
[»] chr4 (17 HSPs)
chr4 (49-164)||(13933301-13933416)
chr4 (109-226)||(20847334-20847452)
chr4 (70-191)||(13908652-13908773)
chr4 (120-226)||(41918415-41918522)
chr4 (70-167)||(1920012-1920108)
chr4 (119-222)||(14616448-14616553)
chr4 (77-153)||(17958490-17958566)
chr4 (79-174)||(10115963-10116058)
chr4 (77-222)||(18173243-18173392)
chr4 (49-218)||(11923654-11923821)
chr4 (117-163)||(19699230-19699276)
chr4 (117-163)||(19709815-19709861)
chr4 (117-163)||(40902362-40902408)
chr4 (119-163)||(15215505-15215549)
chr4 (79-164)||(19076288-19076374)
chr4 (117-156)||(18667801-18667840)
chr4 (122-160)||(15676507-15676545)
[»] scaffold0186 (1 HSPs)
scaffold0186 (118-227)||(11465-11576)
[»] chr8 (16 HSPs)
chr8 (41-203)||(25261811-25261975)
chr8 (34-161)||(24623310-24623437)
chr8 (118-224)||(31195904-31196011)
chr8 (117-226)||(17500451-17500562)
chr8 (117-164)||(25608639-25608686)
chr8 (117-163)||(16041163-16041209)
chr8 (117-163)||(16042839-16042885)
chr8 (117-163)||(18610758-18610804)
chr8 (117-160)||(17265409-17265452)
chr8 (88-162)||(18032855-18032928)
chr8 (96-158)||(23543800-23543861)
chr8 (118-203)||(24270653-24270738)
chr8 (118-163)||(20177659-20177704)
chr8 (118-163)||(20222386-20222431)
chr8 (116-217)||(16216289-16216390)
chr8 (118-158)||(15062417-15062457)
[»] chr2 (13 HSPs)
chr2 (34-226)||(22576472-22576664)
chr2 (117-227)||(45619697-45619809)
chr2 (71-164)||(23154411-23154504)
chr2 (71-164)||(23565668-23565761)
chr2 (117-164)||(22331163-22331210)
chr2 (117-163)||(7513679-7513725)
chr2 (117-163)||(42180026-42180072)
chr2 (46-226)||(23157846-23158028)
chr2 (46-226)||(23569103-23569285)
chr2 (118-160)||(18994764-18994806)
chr2 (120-173)||(24533277-24533330)
chr2 (118-224)||(21652743-21652853)
chr2 (122-160)||(24342999-24343037)
[»] chr6 (20 HSPs)
chr6 (34-222)||(23295677-23295870)
chr6 (117-226)||(22595120-22595230)
chr6 (118-226)||(12466178-12466286)
chr6 (49-203)||(23090284-23090438)
chr6 (117-226)||(31162515-31162626)
chr6 (117-163)||(19627828-19627874)
chr6 (119-164)||(16374878-16374923)
chr6 (118-163)||(35010941-35010986)
chr6 (118-158)||(19728999-19729039)
chr6 (94-169)||(24217345-24217420)
chr6 (117-163)||(17084979-17085025)
chr6 (117-163)||(17858008-17858054)
chr6 (126-163)||(11374489-11374526)
chr6 (126-163)||(29162148-29162185)
chr6 (118-191)||(1560372-1560446)
chr6 (118-224)||(22442500-22442606)
chr6 (116-161)||(4173305-4173350)
chr6 (46-161)||(12975028-12975146)
chr6 (94-158)||(5485938-5486001)
chr6 (100-163)||(14487157-14487221)
[»] scaffold0317 (1 HSPs)
scaffold0317 (118-226)||(15509-15619)
[»] scaffold0024 (1 HSPs)
scaffold0024 (34-161)||(101023-101151)
[»] chr5 (11 HSPs)
chr5 (47-162)||(25340929-25341045)
chr5 (79-214)||(37275744-37275880)
chr5 (117-164)||(14343505-14343552)
chr5 (118-163)||(34937949-34937994)
chr5 (94-214)||(37278015-37278136)
chr5 (118-226)||(17301886-17301994)
chr5 (89-161)||(19318094-19318165)
chr5 (116-163)||(11765049-11765096)
chr5 (125-162)||(16837014-16837051)
chr5 (122-160)||(18532420-18532458)
chr5 (122-160)||(22055384-22055422)
[»] scaffold0161 (1 HSPs)
scaffold0161 (43-163)||(3742-3865)
[»] scaffold0205 (1 HSPs)
scaffold0205 (109-226)||(4130-4249)
[»] scaffold0115 (1 HSPs)
scaffold0115 (117-226)||(20153-20263)
[»] scaffold0070 (1 HSPs)
scaffold0070 (70-216)||(46696-46842)
[»] scaffold0123 (2 HSPs)
scaffold0123 (11-163)||(33936-34092)
scaffold0123 (89-218)||(33771-33904)
[»] scaffold0005 (1 HSPs)
scaffold0005 (119-222)||(200824-200929)
[»] scaffold1869 (1 HSPs)
scaffold1869 (63-158)||(798-894)
[»] chr1 (4 HSPs)
chr1 (71-222)||(11845053-11845203)
chr1 (117-163)||(20252696-20252742)
chr1 (117-163)||(33395838-33395884)
chr1 (118-161)||(21199238-21199281)
[»] scaffold0396 (1 HSPs)
scaffold0396 (117-164)||(163-210)
[»] scaffold0299 (1 HSPs)
scaffold0299 (77-222)||(9646-9795)
[»] scaffold0158 (1 HSPs)
scaffold0158 (117-163)||(23366-23412)
[»] scaffold0138 (3 HSPs)
scaffold0138 (117-163)||(26804-26850)
scaffold0138 (117-163)||(27819-27865)
scaffold0138 (117-163)||(39815-39861)
[»] scaffold0009 (1 HSPs)
scaffold0009 (118-164)||(256039-256085)
[»] scaffold0508 (1 HSPs)
scaffold0508 (89-161)||(5850-5921)
[»] scaffold0468 (1 HSPs)
scaffold0468 (128-226)||(12630-12730)
[»] scaffold0086 (1 HSPs)
scaffold0086 (118-226)||(11061-11169)
[»] scaffold0003 (1 HSPs)
scaffold0003 (89-161)||(26007-26078)
[»] scaffold0111 (1 HSPs)
scaffold0111 (77-226)||(28805-28955)
[»] scaffold0231 (1 HSPs)
scaffold0231 (118-164)||(14586-14632)
[»] scaffold0191 (1 HSPs)
scaffold0191 (117-163)||(312-358)
[»] scaffold0090 (1 HSPs)
scaffold0090 (118-164)||(36419-36465)
[»] scaffold0112 (1 HSPs)
scaffold0112 (117-162)||(12210-12255)
[»] scaffold0017 (1 HSPs)
scaffold0017 (118-163)||(11125-11170)
[»] scaffold0183 (1 HSPs)
scaffold0183 (117-164)||(9280-9326)
[»] scaffold0282 (1 HSPs)
scaffold0282 (79-164)||(20556-20643)
[»] scaffold0002 (1 HSPs)
scaffold0002 (94-163)||(295583-295654)


Alignment Details
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 17150955 - 17151171
Alignment:
Q  11 gaagaatataattgccgatgttt-ttacattgtttctgcagaacgtaattgaagatgtttattacgttagtggattcaaaacgataaaattatctttgaa 109  Q
    ||||||| |||||| |||||||| |||||||| || ||||||||||||| |  |||||||||||||||||||||||||||||| | |||||||||  | |    
T  17150955 gaagaatgtaattgtcgatgtttgttacattgcttatgcagaacgtaatggccgatgtttattacgttagtggattcaaaacggttaaattatctccgga 17151054  T
Q  110 atccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatg-aacgtgtcatacttaaataggtgatttggtggctat 208  Q
    ||||||| ||||||||||||||||| ||||||||| | ||||||||||||| | | |||| || || |||||||  || |||| |||||||||||| |||    
T  17151055 atccaattggtaccacatgcatctaaaagagtctaaaacattgcatgcattag-agattggtgaaatgtgtcatgtttgaatatgtgatttggtggttat 17151153  T
Q  209 gtgcattggtgaaatttg 226  Q
     |||||||||||||||||    
T  17151154 ttgcattggtgaaatttg 17151171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 229
Target Start/End: Original strand, 6461374 - 6461525
Alignment:
Q  79 gtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatg-aacgt 177  Q
    |||||||||| |||  ||||||||||| | |||| ||| |||||||||||||||| |||||||||| | |||| ||||||||||| | ||| || || ||    
T  6461374 gtggattcaatacggcaaaattatcttcggaatcgaattggtaccacatgcatcttgaagagtctaaaacatttcatgcatttgatagttggtgaaatgt 6461473  T
Q  178 gtcatacttaaataggtgatttggtggctatgtgcattggtgaaatttgtga 229  Q
    ||||||||| | || |||| ||||||  ||||||||||| ||| ||||||||    
T  6461474 gtcatacttgactatgtgaattggtgattatgtgcattgatgagatttgtga 6461525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 13487923 - 13487797
Alignment:
Q  35 tacattgtttctgcagaacgtaattgaagatgtttattacgttagtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatcta 134  Q
    ||||||| ||| ||||||||| ||||  | ||||||||| ||| ||| |||||| | | |||||||||||  | | |||||| |||||||||||||| ||    
T  13487923 tacattgcttcagcagaacgttattggtggtgtttattatgttcgtgcattcaatatggtaaaattatctccggagtccaattggtaccacatgcatgta 13487824  T
Q  135 gaagagtctagatcattgcatgcattt 161  Q
    |||| ||||||| ||||||||||||||    
T  13487823 gaagtgtctagaacattgcatgcattt 13487797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 203
Target Start/End: Complemental strand, 26427201 - 26427076
Alignment:
Q  79 gtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatga-acgt 177  Q
    |||||||||| | | |||||||||||| | |||||||| |||||||| ||||| |||||||||||||| ||||||||||| |||| || || |||  |||    
T  26427201 gtggattcaatatggtaaaattatcttcggaatccaattggtaccacgtgcatttagaagagtctagaacattgcatgcacttgataactggtgagtcgt 26427102  T
Q  178 gtcatacttaaataggtgatttggtg 203  Q
    ||||||||| | || |||| ||||||    
T  26427101 gtcatacttgactatgtgaattggtg 26427076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 9128916 - 9129034
Alignment:
Q  109 aatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaa-aattgatga-acgtgtcatacttaaataggtgatttggtggct 206  Q
    |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| | ||| |||  ||||||||| || |||| |||| ||||||  |    
T  9128916 aatccaat-ggtaccacatgcatctagaagagtctagaacattgtatgcatttgaatatttggtgagtcgtgtcataattgaatatgtgacttggtgaat 9129014  T
Q  207 atgtgcattggtgaaatttg 226  Q
     ||||||||||| |||||||    
T  9129015 ttgtgcattggtaaaatttg 9129034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 167
Target Start/End: Original strand, 17492834 - 17492930
Alignment:
Q  70 attacgttagtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaat 167  Q
    |||||||||||||||||| | || ||||||||||| || ||||||||  ||||||||||| | ||| || ||||||| ||||||||||| ||||||||    
T  17492834 attacgttagtggattcataccg-taaaattatctatggaatccaattagtaccacatgcgtgtagcagtgtctagaacattgcatgcacttgaaaat 17492930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 17560380 - 17560284
Alignment:
Q  70 attacgttagtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaat 167  Q
    |||||||||||||||||| | || ||||||||||| || ||||||||  ||||||||||| | ||| || ||||||| ||||||||||| ||||||||    
T  17560380 attacgttagtggattcataccg-taaaattatctatggaatccaattagtaccacatgcgtgtagcagtgtctagaacattgcatgcacttgaaaat 17560284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 6210572 - 6210628
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatgaa 174  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||| ||||| ||||    
T  6210572 ggtaccatatgcatctagaagagtctagaacattgcatgcatttgataattggtgaa 6210628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 14278124 - 14278235
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga-aaattgatga-acgtgtcatacttaaataggtgatttggtggctatgtgcat 214  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||  |||||||||   |||||||| || |||| |||| ||| ||  | |||||||    
T  14278124 cggtaccacatgcatttagaagagtctagaacattgcatgcatttgagtaattgatgagttgtgtcataattgaatatgtgacttgatgaatttgtgcat 14278223  T
Q  215 tggtgaaatttg 226  Q
    ||||| ||||||    
T  14278224 tggtggaatttg 14278235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 14252960 - 14253006
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  14252960 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 14253006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 225
Target Start/End: Complemental strand, 16093368 - 16093248
Alignment:
Q  109 aatccaatcggtaccacatgcatctagaa--gagtctagatcattgcatgcatttgaaaattgatgaa--cgtgtcatacttaaataggtgatttggtgg 204  Q
    |||||||| ||||||||||||| ||||||  |||||||||||||||||||||||| | | ||| ||||  ||||||||| ||   || |||||||||||     
T  16093368 aatccaattggtaccacatgcaactagaaaagagtctagatcattgcatgcatttaatatttggtgaaatcgtgtcatatttggctacgtgatttggtga 16093269  T
Q  205 ctatgtgcattggtgaaattt 225  Q
     ||||||||||| ||| ||||    
T  16093268 atatgtgcattgatgacattt 16093248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 218
Target Start/End: Original strand, 39293368 - 39293470
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttga-aaattgatga-acgtgtcatacttaaataggtgatttggtggctatgtgcatt 215  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||  |||||||||  ||||||||| || |||| |||| ||| ||  | ||||||||    
T  39293368 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttgagtaattgatgagtcgtgtcataattgaatatgtgacttgatgaatttgtgcatt 39293467  T
Q  216 ggt 218  Q
    |||    
T  39293468 ggt 39293470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 45148127 - 45148081
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  45148127 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 45148081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 12246516 - 12246471
Alignment:
Q  119 gtaccacatgcatctagaagagtctagatcattgcatgcatttgaa 164  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||    
T  12246516 gtaccgcatgcatctagaagagtctagaacattgcatgcatttgaa 12246471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 225
Target Start/End: Original strand, 14280053 - 14280169
Alignment:
Q  109 aatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatg-aacgtgtcatacttaaataggtgatttggtggcta 207  Q
    |||||||| ||||||||||| || ||||   ||||||| ||||||||||||||| || |||||| || |||||| |||| |||| |||| ||||||  ||    
T  14280053 aatccaattggtaccacatggatgtagagatgtctagaacattgcatgcatttg-aagttgatgaaatgtgtcacacttgaatatgtgacttggtgaata 14280151  T
Q  208 tgtgcattggtgaaattt 225  Q
     |||||||||||||||||    
T  14280152 agtgcattggtgaaattt 14280169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 14974187 - 14974295
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatga-acgtgtcatacttaaataggtgatttggtggctatgtgcattg 216  Q
    |||||||||||||||||||| |||||||| ||||||| ||||||| || ||| ||| |  ||||||  ||||||| |||| ||||||  |||||| ||||    
T  14974187 ggtaccacatgcatctagaatagtctagaacattgcaagcatttg-aatttggtgagatatgtcatgattaaatatgtgacttggtgaatatgtgtattg 14974285  T
Q  217 gtgaaatttg 226  Q
    ||||||||||    
T  14974286 gtgaaatttg 14974295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 15403663 - 15403771
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatga-acgtgtcatacttaaataggtgatttggtggctatgtgcattg 216  Q
    |||||||||||||||||||| |||||||| ||||||| ||||||| || ||| ||| |  ||||||  ||||||| |||| ||||||  |||||| ||||    
T  15403663 ggtaccacatgcatctagaatagtctagaacattgcaagcatttg-aatttggtgagatatgtcatgattaaatatgtgacttggtgaatatgtgtattg 15403761  T
Q  217 gtgaaatttg 226  Q
    ||||||||||    
T  15403762 gtgaaatttg 15403771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 16436377 - 16436448
Alignment:
Q  89 aacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcattt 161  Q
    |||| ||||||||||| || ||||| || | ||||||||||||||||||||||||||| ||| ||||||||||    
T  16436377 aacggtaaaattatctctggaatcctat-gataccacatgcatctagaagagtctagaacatagcatgcattt 16436448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 16065100 - 16064989
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttgaa-aattgatga-acgtgtcatactt-aaataggtgatttggtggctatgtgcat 214  Q
    |||||||||||||||||||||| |||||| ||||||||| ||||||| | ||| |||  ||||||| | || ||||| |||| ||||||  | |||||||    
T  16065100 ggtaccacatgcatctagaagattctagaacattgcatgaatttgaatatttggtgagtcgtgtcagaattgaaatatgtgacttggtgaatttgtgcat 16065001  T
Q  215 tggtgaaatttg 226  Q
    ||||||||||||    
T  16065000 tggtgaaatttg 16064989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 19066158 - 19066112
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||| |||||||||||||||||||||| ||||||||| ||||||    
T  19066158 cggtaccgcatgcatctagaagagtctagaacattgcatgtatttga 19066112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 3172131 - 3172227
Alignment:
Q  65 tgtttattacgttagtggattcaa-aacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcattt 161  Q
    ||||||||| ||| || ||||||  |||| |||||||||||  | ||||| || |||||||||||||||||||||||| || | ||||||||||||||    
T  3172131 tgtttattatgttggttgattcattaacggtaaaattatctccggaatcctat-ggtaccacatgcatctagaagagtttaaaacattgcatgcattt 3172227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 44306898 - 44306943
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    |||||||||||||| ||||||||||||||  |||||||||||||||    
T  44306898 ggtaccacatgcatgtagaagagtctagaatattgcatgcatttga 44306943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 13460881 - 13460837
Alignment:
Q  120 taccacatgcatctagaagagtctagatcattgcatgcatttgaa 164  Q
    |||| |||||||||||||||||||||| |||||||| ||||||||    
T  13460881 taccgcatgcatctagaagagtctagaacattgcatacatttgaa 13460837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 191
Target Start/End: Original strand, 15755929 - 15756003
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatgaa-cgtgtcatacttaaata 191  Q
    ||||||||||| || |||||||||||||| ||||||| ||| |||  |||||||||| || ||||||||| ||||    
T  15755929 ggtaccacatgtatatagaagagtctagaacattgcaagcaattgttaattgatgaatcgagtcatacttgaata 15756003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 4072210 - 4072254
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcattt 161  Q
    |||||||  |||||||||||||||| |||| ||||||||||||||    
T  4072210 cggtaccgtatgcatctagaagagtatagaacattgcatgcattt 4072254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 8325449 - 8325489
Alignment:
Q  121 accacatgcatctagaagagtctagatcattgcatgcattt 161  Q
    |||||||||||||||| ||||||||| |||||||| |||||    
T  8325449 accacatgcatctagatgagtctagaacattgcatacattt 8325489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 34 - 229
Target Start/End: Original strand, 25486948 - 25487144
Alignment:
Q  34 ttacattgtttctgcagaacgtaattgaagatgtttattacgttagtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatct 133  Q
    |||||| | ||||||||||||||||||  ||||||||||||||| |||||||||| |||  |||||||||| |  |||||||| |||||||||||||| |    
T  25486948 ttacatagcttctgcagaacgtaattggtgatgtttattacgttggtggattcaatacggcaaaattatctctataatccaattggtaccacatgcattt 25487047  T
Q  134 agaagagtctagatcattgcatgcatttgaaaattgatga-acgtgtcatacttaaataggtgatttggtggctatgtgcattggtgaaatttgtga 229  Q
    |||| |||||||| |||| |||||| |||| ||||| | |  |||||||||||| | || |||| ||||||  ||||||||||| ||||||| ||||    
T  25487048 agaatagtctagaacattacatgcacttgataattggttattcgtgtcatacttgactatgtgaattggtgattatgtgcattgatgaaattggtga 25487144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 17385447 - 17385285
Alignment:
Q  65 tgtttattacgttagtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaa 164  Q
    ||||||||||||||||||||||||  || ||| |||||||    ||||||||  |||||||||||||||||||||||||||| ||||||||||||||||     
T  17385447 tgtttattacgttagtggattcaatgcggtaagattatctccataatccaattagtaccacatgcatctagaagagtctagaacattgcatgcatttgat 17385348  T
Q  165 aattgatg-aacgtgtcatacttaaataggtgatttggtggctatgtgcattggtgaaatttg 226  Q
    ||||| || || |||||||| || | || |||| || |||  |||||||||||||||||||||    
T  17385347 aattggtgaaatgtgtcataattcactatgtgaattcgtgattatgtgcattggtgaaatttg 17385285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 6809066 - 6808907
Alignment:
Q  11 gaagaatataattgccgatgttt-ttacattgtttctgcagaacgtaattgaagatgtttattacgttagtggattcaaaacgataaaattatctttgaa 109  Q
    ||||||| ||||||  ||||||| |||||| | ||||||||||| |||| |  ||||||||||| ||| ||||||| || ||| ||||||| |||    |    
T  6809066 gaagaatgtaattggtgatgtttattacatagcttctgcagaacataatgggtgatgtttattatgttggtggatttaatacggtaaaattttctcaaga 6808967  T
Q  110 atccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattg 169  Q
    ||||||| | ||||||||||||||||||||||||||| ||||||||||| |||| |||||    
T  6808966 atccaattgataccacatgcatctagaagagtctagaacattgcatgcacttgataattg 6808907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 225
Target Start/End: Original strand, 21094199 - 21094353
Alignment:
Q  70 attacgttagtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattg 169  Q
    |||||||||||||||||| | || |||||||||||  | |||||||| |||||||||||||| |||||| ||||||| ||||||||||| |||||  | |    
T  21094199 attacgttagtggattcaca-cggtaaaattatctccggaatccaattggtaccacatgcatgtagaagtgtctagaacattgcatgcacttgaagttag 21094297  T
Q  170 atgaacgtgtcatacttaaataggtgatttggtggctatgtgcattggtgaaattt 225  Q
       || |||||||||||||||| |||| ||||||  ||||| ||||||| ||||||    
T  21094298 tgaaatgtgtcatacttaaatatgtgacttggtgattatgttcattggttaaattt 21094353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 11401122 - 11401014
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttgaa-aattgatgaa-cgtgtcatacttaaataggtgatttggtggctatgtgcatt 215  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||   ||||||||  |||||||| || |||| |||| ||| ||| | ||||||||    
T  11401122 ggtaccacatgcatctagaagagtctagaacattgcatgcatttgaatggttgatgaattgtgtcataatttaatatgtgacttgatggatttgtgcatt 11401023  T
Q  216 ggtgaaatt 224  Q
    |||||||||    
T  11401022 ggtgaaatt 11401014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 158
Target Start/End: Original strand, 19978341 - 19978429
Alignment:
Q  70 attacgttagtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgca 158  Q
    ||||||||||||||||||| ||| |||||||||||  | |||||| | |||||||||||||||||| ||||||||||  ||||||||||    
T  19978341 attacgttagtggattcaatacggtaaaattatctccgcaatccatttggtaccacatgcatctaggagagtctagaatattgcatgca 19978429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 2547951 - 2548107
Alignment:
Q  11 gaagaatataattgccgatgttt-ttacattgtttctgcagaacgtaattgaagatgtttattacgttagtggattcaa-aacgataaaattatctttga 108  Q
    |||||| |||||||  ||||||| |||||| ||||||||| ||| ||||||  ||||||||||| ||| ||| |||||  |||| |||||||||||| |     
T  2547951 gaagaacataattggtgatgtttattacatagtttctgcaaaacataattggtgatgtttattatgttggtgtattcattaacggtaaaattatcttcgg 2548050  T
Q  109 aatccaatcggtaccacatgcatct--agaagagtctagatcattgcatgcatttga 163  Q
    ||||| |  ||||||||||||||||  |||||||| |||| |||||||| |||||||    
T  2548051 aatcctaatggtaccacatgcatctagagaagagtatagaacattgcatacatttga 2548107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 9637699 - 9637774
Alignment:
Q  94 taaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattg 169  Q
    ||||||||| ||  ||||||||| ||||||||||||| ||||||||||||||| |||| ||||||||||| |||||    
T  9637699 taaaattattttcaaaatccaattggtaccacatgcagctagaagagtctagaacattacatgcatttgataattg 9637774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 13438625 - 13438556
Alignment:
Q  89 aacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcat 159  Q
    |||| ||||||||||| || ||||| || ||||||||||||||||||||||||||||| ||||||||||||    
T  13438625 aacggtaaaattatctctggaatcctat-ggtaccacatgcatctagaagagtctagaacattgcatgcat 13438556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 54040204 - 54040250
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  54040204 cggtaccacatgcatctagaagagtctagaacattgcatgcatttga 54040250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 54049491 - 54049537
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  54049491 cggtaccacatgcatctagaagagtctagaacattgcatgcatttga 54049537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 8022823 - 8022757
Alignment:
Q  89 aacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatg 156  Q
    ||||||||||||||||  | |||||||| |||||||||||||||||||||| |||||| |||||||||    
T  8022823 aacgataaaattatctccggaatccaat-ggtaccacatgcatctagaagattctagaacattgcatg 8022757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 31413907 - 31413994
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcattt-gaaaattgatga-acgtgtcatacttaaataggtgatttggt 202  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||  |||||||||||  ||||||||| || |||| |||| |||||    
T  31413907 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttaaaaaattgatgagtcgtgtcataattgaatatgtgacttggt 31413994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 161
Target Start/End: Complemental strand, 10725098 - 10724981
Alignment:
Q  44 tctgcagaacgtaattgaagatgtttattacgttagtggattc-aaaacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtc 142  Q
    |||||||||| ||||||  | ||||||||| ||||||||||||   |||||  |||||||||||||||||| || |||| || ||||||||||| |||||    
T  10725098 tctgcagaacataattggtggtgtttattatgttagtggattcgttaacgaagaaattatctttgaaatcctat-ggtatcaaatgcatctagatgagtc 10725000  T
Q  143 tagatcattgcatgcattt 161  Q
    ||||  |||||||| ||||    
T  10724999 tagaatattgcatgaattt 10724981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 15551124 - 15551170
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  15551124 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 15551170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 25105582 - 25105692
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttgaa-aattgatga-acgtgtcatacttaaataggtgatttggtggctatgtgcatt 215  Q
    ||||||||||||| ||||| ||||||||| ||||||||||||||||| | |||||||  ||||||||| || |||| |||  ||| ||  | ||||||||    
T  25105582 ggtaccacatgcacctagaggagtctagaacattgcatgcatttgaatagttgatgagtcgtgtcataattgaatatgtgccttgttgaatttgtgcatt 25105681  T
Q  216 ggtgaaatttg 226  Q
    |||||||||||    
T  25105682 ggtgaaatttg 25105692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 17391883 - 17391838
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    |||||||||||||||||||||||||| || ||||||||||||||||    
T  17391883 ggtaccacatgcatctagaagagtcttgaacattgcatgcatttga 17391838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 221
Target Start/End: Original strand, 8853547 - 8853651
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatga-acgtgtcatacttaaataggtgatttggtggctatgtgcattg 216  Q
    |||| ||||| |||||||| ||||||||| |||||||||||||| | ||||| |||  || ||||||||| |||| |||| | ||||  |||||||||||    
T  8853547 ggtatcacatacatctagatgagtctagaacattgcatgcatttaataattggtgagtcgagtcatacttgaatatgtgaatcggtgtatatgtgcattg 8853646  T
Q  217 gtgaa 221  Q
    |||||    
T  8853647 gtgaa 8853651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 27050320 - 27050238
Alignment:
Q  79 gtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttg 162  Q
    |||||||||| ||| ||| ||||| || | |||||||| ||||| |||||||||||||| ||| |||| |||||||||||||||    
T  27050320 gtggattcaatacggtaagattattttcggaatccaat-ggtactacatgcatctagaatagtatagaacattgcatgcatttg 27050238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 8603209 - 8603171
Alignment:
Q  126 atgcatctagaagagtctagatcattgcatgcatttgaa 164  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  8603209 atgcatctagaagagtctagaacattgcatgcatttgaa 8603171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 17760063 - 17760109
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||| |||||||| ||||||||||||| ||||||||||||||||    
T  17760063 cggtaccgcatgcatcaagaagagtctagaacattgcatgcatttga 17760109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 19061383 - 19061429
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||| |||||||| ||||||||||||| ||||||||||||||||    
T  19061383 cggtaccgcatgcatcaagaagagtctagaacattgcatgcatttga 19061429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 19633324 - 19633473
Alignment:
Q  12 aagaatataattgccgatgttt-ttacattgtttctgcagaacgtaattgaagatgtttattacgttagtggattcaa-aacgataaaattatctttgaa 109  Q
    |||||| ||||||  ||||||| |||||| | ||||||||||  ||||||  ||| ||||||| ||| |||||||||  |||| |||||||||||  | |    
T  19633324 aagaatgtaattggtgatgtttattacatagcttctgcagaatataattggtgatatttattatgttggtggattcattaacggtaaaattatctccgga 19633423  T
Q  110 atccaatcggtaccacatgcatctagaagagtctagatcattgcatgcat 159  Q
    |||| |  ||| | || |||||||||| ||||||||| ||||||||||||    
T  19633424 atcctaatggtgcgacgtgcatctagatgagtctagaacattgcatgcat 19633473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 12254386 - 12254451
Alignment:
Q  89 aacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcat 155  Q
    |||| |||||||||||  | ||||| || |||||||||||||| |||||||||||||| ||||||||    
T  12254386 aacggtaaaattatctccggaatcctat-ggtaccacatgcatttagaagagtctagaacattgcat 12254451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 21764245 - 21764291
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttgaa 164  Q
    |||| ||||||||||||||| |||||||| |||| ||||||||||||    
T  21764245 ggtatcacatgcatctagaatagtctagaacatttcatgcatttgaa 21764291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 25606936 - 25606974
Alignment:
Q  122 ccacatgcatctagaagagtctagatcattgcatgcatt 160  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  25606936 ccacatgcatctagaggagtctagaacattgcatgcatt 25606974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 151
Target Start/End: Complemental strand, 21765339 - 21765306
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcatt 151  Q
    ||||||||||||||||||||||||||||| ||||    
T  21765339 ggtaccacatgcatctagaagagtctagaacatt 21765306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 164
Target Start/End: Complemental strand, 13933416 - 13933301
Alignment:
Q  49 agaacgtaattgaagatgtttattacgttagtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatc 148  Q
    ||||||||||||  | ||||| |||||||||||||||||| ||| |||||||||||||| ||||||||  ||| ||||||||| |||||| |||| || |    
T  13933416 agaacgtaattggtggtgtttgttacgttagtggattcaatacggtaaaattatctttggaatccaattagtatcacatgcatgtagaagtgtctggaac 13933317  T
Q  149 attgcatgcatttgaa 164  Q
    ||||||||||||||||    
T  13933316 attgcatgcatttgaa 13933301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 226
Target Start/End: Complemental strand, 20847452 - 20847334
Alignment:
Q  109 aatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatg-aacgtgtcatacttaaataggtgatttggtggcta 207  Q
    |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||  |||| || |||||||||||||| | || |||  ||||||  ||    
T  20847452 aatccaattggtaccacatgtatctagaagagtctagaacattgcatgcatttgatcattggtgaaacgtgtcatacttgactatgtgtattggtgatta 20847353  T
Q  208 tgtgcattggtgaaatttg 226  Q
    ||||||||| |||||||||    
T  20847352 tgtgcattgatgaaatttg 20847334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 13908652 - 13908773
Alignment:
Q  70 attacgttagtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattg 169  Q
    |||||||||||||||||| | || |||||||||||  |||||||||| |||||||||||||  |||| | ||||||| |||| |||||||||||| ||||    
T  13908652 attacgttagtggattcata-cggtaaaattatctccgaaatccaattggtaccacatgcaggtagaggtgtctagaacattacatgcatttgaatattg 13908750  T
Q  170 atg-aacgtgtcatacttaaata 191  Q
     || |||||||||||||| ||||    
T  13908751 gtgaaacgtgtcatacttgaata 13908773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 120 - 226
Target Start/End: Original strand, 41918415 - 41918522
Alignment:
Q  120 taccacatgcatctagaagagtctagatcattgcatgcatttgaa-aattgatga-acgtgtcatacttaaataggtgatttggtggctatgtgcattgg 217  Q
    |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||  |||||||||  | |||| |||| ||||| | | ||||||||||    
T  41918415 taccgcatgcatctagaagagtctagaacattgcatgcatttgaataattgatgagtcgtgtcataaatgaatatgtgacttggttgat-tgtgcattgg 41918513  T
Q  218 tgaaatttg 226  Q
    |||||||||    
T  41918514 tgaaatttg 41918522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 167
Target Start/End: Original strand, 1920012 - 1920108
Alignment:
Q  70 attacgttagtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaat 167  Q
    |||||||||||||||||| | || ||||||||||| || ||||||||  ||||||||||  | |||||| ||||||| ||||||||||| ||||||||    
T  1920012 attacgttagtggattcataccg-taaaattatctctggaatccaattagtaccacatgtgtgtagaagtgtctagaacattgcatgcacttgaaaat 1920108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 14616553 - 14616448
Alignment:
Q  119 gtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatga-acgtgtcat-acttaaataggtgatttggtggctatgtgcattg 216  Q
    |||||||||||||||||| ||||||||| ||||||||||| |||  ||||| |||  |||||||| | || |||| |||||||||||  |||||||||||    
T  14616553 gtaccacatgcatctagaggagtctagaacattgcatgcacttgttaattggtgagtcgtgtcataaatttaataagtgatttggtgattatgtgcattg 14616454  T
Q  217 gtgaaa 222  Q
    ||||||    
T  14616453 gtgaaa 14616448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 17958566 - 17958490
Alignment:
Q  77 tagtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgc 153  Q
    |||||| ||||| ||| |||||||||||| | ||| || ||||||||||||||||||||| ||||||||| ||||||    
T  17958566 tagtgggttcaatacggtaaaattatcttcggaattcagtcggtaccacatgcatctagacgagtctagaacattgc 17958490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 10115963 - 10116058
Alignment:
Q  79 gtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatgaa 174  Q
    |||||||||| ||| ||||||||| ||   |||| |||  |||||||||||||  | ||||||||||| |||||||||||||||| ||||||||||    
T  10115963 gtggattcaatacggtaaaattatattcagaatctaattagtaccacatgcattaaaaagagtctagaacattgcatgcatttgataattgatgaa 10116058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 222
Target Start/End: Complemental strand, 18173392 - 18173243
Alignment:
Q  77 tagtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatctag--aagagtctagatcattgcatgcatttgaaaattgatgaa 174  Q
    |||||||||||| ||| ||||||||||| |||||||| |  | ||||||||||||||||  |||||||||||  ||| |||||||||||   ||| ||||    
T  18173392 tagtggattcaatacggtaaaattatctctgaaatcctaatgataccacatgcatctagacaagagtctagaaaattccatgcatttgatgtttgttgaa 18173293  T
Q  175 --cgtgtcatacttaaataggtgatttggtggctatgtgcattggtgaaa 222  Q
        |||||||||| | |  |||||||||||  |||||||||||||||||    
T  18173292 attatgtcatacttgactttgtgatttggtgattatgtgcattggtgaaa 18173243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 218
Target Start/End: Original strand, 11923654 - 11923821
Alignment:
Q  49 agaacgtaattgaagatgtttattacgttagtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatc 148  Q
    ||||||||||||| | |||||||||||||||||||||| | ||| |||||||||||  ||| ||||||  |||  |||||||| |||||| | ||||| |    
T  11923654 agaacgtaattgatg-tgtttattacgttagtggattc-atacggtaaaattatctccgaactccaattagtattacatgcatgtagaagtgcctagaac 11923751  T
Q  149 attgcatgcatttgaaaattgatg-aacgtgtcatacttaaataggtgatttggtggctatgtgcattggt 218  Q
    ||||||||||  || || ||| || || ||||||||||| |||  |||| ||||||  |||||||||||||    
T  11923752 attgcatgcacgtg-aagttggtgaaatgtgtcatacttgaatgtgtgacttggtgaatatgtgcattggt 11923821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 19699230 - 19699276
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  19699230 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 19699276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 19709815 - 19709861
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  19709815 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 19709861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 40902362 - 40902408
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  40902362 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 40902408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 15215505 - 15215549
Alignment:
Q  119 gtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||| |||||||||||||||||||||| ||||||||| ||||||    
T  15215505 gtaccgcatgcatctagaagagtctagaacattgcatgtatttga 15215549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 19076374 - 19076288
Alignment:
Q  79 gtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatcta--gaagagtctagatcattgcatgcatttgaa 164  Q
    |||||||||| ||  ||| |||||||  | |||||||| |||||||||||||||||  ||| |||||||| |||||||||||||||||    
T  19076374 gtggattcaatacagtaatattatctccggaatccaat-ggtaccacatgcatctaaagaaaagtctagaacattgcatgcatttgaa 19076288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 18667801 - 18667840
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatg 156  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  18667801 cggtaccacatgcatctagaagagtatagaacattgcatg 18667840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 15676507 - 15676545
Alignment:
Q  122 ccacatgcatctagaagagtctagatcattgcatgcatt 160  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  15676507 ccacatgcatctagaggagtctagaacattgcatgcatt 15676545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 118 - 227
Target Start/End: Complemental strand, 11576 - 11465
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatg--aacgtgtcatacttaaataggtgatttggtggctatgtgcatt 215  Q
    |||||||||||||||||||||||||||||  ||||||||||||||| ||||| ||  |||||||||||||| | || |||| ||||||  ||||||||||    
T  11576 ggtaccacatgcatctagaagagtctagaatattgcatgcatttgataattggtgaaaacgtgtcatacttgactatgtgacttggtgaatatgtgcatt 11477  T
Q  216 ggtgaaatttgt 227  Q
    ||||||| ||||    
T  11476 ggtgaaacttgt 11465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 41 - 203
Target Start/End: Complemental strand, 25261975 - 25261811
Alignment:
Q  41 gtttctgcagaacgtaattgaagatgtttattacgttagtggattcaa-aacgataaaattatctttgaaatccaatcggtaccacatgcatctagaaga 139  Q
    ||||||||||||| ||||||  ||||||||||| ||| |||||||||  || | |||||| |||||| |||||| || ||||||||||||||||||||||    
T  25261975 gtttctgcagaacataattggtgatgtttattatgttggtggattcattaatggtaaaatcatctttcaaatcctattggtaccacatgcatctagaaga 25261876  T
Q  140 gtctagatcattgcatgcatttgaaaattgatga-acgtgtcatacttaaataggtgatttggtg 203  Q
    ||||||| |||| |||||| |||  ||||| |||  ||||||||||||  ||| |||| ||||||    
T  25261875 gtctagaacattacatgcacttgttaattggtgagtcgtgtcatactttgatatgtgaattggtg 25261811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 161
Target Start/End: Complemental strand, 24623437 - 24623310
Alignment:
Q  34 ttacattgtttctgcagaacgtaattgaagatgtttattacgttagtggattcaa-aacgataaaattatctttgaaatccaatcggtaccacatgcatc 132  Q
    |||||| | |||| |||||| ||||||  ||| ||||||| |||||||||||||  || | |||||||||||  | |||||||| |||||||||||||||    
T  24623437 ttacatagcttctacagaacataattggtgatatttattatgttagtggattcattaagggtaaaattatctccggaatccaat-ggtaccacatgcatc 24623339  T
Q  133 tagaagagtctagatcattgcatgcattt 161  Q
    ||||||||| |||| ||||||||||||||    
T  24623338 tagaagagtttagaacattgcatgcattt 24623310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 224
Target Start/End: Original strand, 31195904 - 31196011
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttgaa-aattgatga-acgtgtcatacttaaataggtgatttggtggctatgtgcatt 215  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||  ||||||||| || |||| |||| |||||   | ||||||||    
T  31195904 ggtaccacatgcatctagaagagtctagaacattgcatgcatttgaataattgatgagtcgtgtcataattgaatatgtgacttggt-tatttgtgcatt 31196002  T
Q  216 ggtgaaatt 224  Q
    |||||||||    
T  31196003 ggtgaaatt 31196011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 117 - 226
Target Start/End: Complemental strand, 17500562 - 17500451
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttgaa-aattgatga-acgtgtcatacttaaataggtgatttggtggctatgtgcat 214  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||   |||||||| || |||| |||| ||| ||  | |||||||    
T  17500562 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttgaataattgatgagttgtgtcataattgaatatgtgacttgttgaatttgtgcat 17500463  T
Q  215 tggtgaaatttg 226  Q
    ||||||||||||    
T  17500462 tggtgaaatttg 17500451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 25608686 - 25608639
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttgaa 164  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||    
T  25608686 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttgaa 25608639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 16041163 - 16041209
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  16041163 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 16041209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 16042839 - 16042885
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  16042839 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 16042885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 18610804 - 18610758
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  18610804 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 18610758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 160
Target Start/End: Complemental strand, 17265452 - 17265409
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatt 160  Q
    ||||||| |||||||||||||||||||||| |||||||||||||    
T  17265452 cggtaccgcatgcatctagaagagtctagaacattgcatgcatt 17265409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 18032928 - 18032855
Alignment:
Q  88 aaacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttg 162  Q
    ||||| ||||||||||| |  |||| ||| ||||||||||||||||||| ||||||||| ||||||| |||||||    
T  18032928 aaacggtaaaattatctcttgaatctaat-ggtaccacatgcatctagatgagtctagaacattgcacgcatttg 18032855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 23543800 - 23543861
Alignment:
Q  96 aaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgca 158  Q
    |||||||||  ||||||| || |||| |||||||||||||||||||||||| |||||||||||    
T  23543800 aaattatctccgaaatcctat-ggtatcacatgcatctagaagagtctagaacattgcatgca 23543861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 24270738 - 24270653
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatg-aacgtgtcatacttaaataggtgatttggtg 203  Q
    |||| ||||||||| | |||| ||||||| ||||||||||| ||| |||||| || |||||||||||||| |||| |||||||||||    
T  24270738 ggtatcacatgcatgtcgaagtgtctagaacattgcatgcacttg-aaattggtgaaacgtgtcatacttgaatatgtgatttggtg 24270653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 20177659 - 20177704
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    |||||||||||||| ||||||||||||||  |||||||||||||||    
T  20177659 ggtaccacatgcatgtagaagagtctagaatattgcatgcatttga 20177704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 20222386 - 20222431
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    |||||||||||||| ||||||||||||||  |||||||||||||||    
T  20222386 ggtaccacatgcatgtagaagagtctagaatattgcatgcatttga 20222431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 16216390 - 16216289
Alignment:
Q  116 tcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatgaacgtgtcatacttaaataggtgatttggtggctatgtgcatt 215  Q
    |||||||||||||||| |||| | ||||||| ||||| ||||| |||| |||||   ||| |||||| || || || ||||||||||   ||||||||||    
T  16216390 tcggtaccacatgcatgtagaggtgtctagaacattgaatgcacttgagaattgtgaaacatgtcatgctaaactatgtgatttggtcattatgtgcatt 16216291  T
Q  216 gg 217  Q
    ||    
T  16216290 gg 16216289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 15062457 - 15062417
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgca 158  Q
    |||||||||||||| |||||| ||||||| |||||||||||    
T  15062457 ggtaccacatgcatgtagaagtgtctagaacattgcatgca 15062417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 226
Target Start/End: Complemental strand, 22576664 - 22576472
Alignment:
Q  34 ttacattgtttctgcagaacgtaattgaagatgtttattacgttagtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatct 133  Q
    |||||| | ||||||||||| ||||||  | ||||||| | ||| ||||||||| |||| |||||||||||| | || ||  | ||||||||||||||||    
T  22576664 ttacatagcttctgcagaacataattggtggtgtttatcatgttggtggattcataacggtaaaattatcttcggaacccttt-ggtaccacatgcatct 22576566  T
Q  134 agaagagtctagatcattgcatgcatttgaaaattgatga-acgtgtcatacttaaataggtgatttggtggctatgtgcattggtgaaatttg 226  Q
    | ||||||||||| ||||||||||| |||  | |||||||  ||||||||| || |||| |||| ||| ||  | |||||||||||||||||||    
T  22576565 aaaagagtctagaacattgcatgcacttgttatttgatgagtcgtgtcatagttgaatatgtgacttgatgaatctgtgcattggtgaaatttg 22576472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 45619697 - 45619809
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttgaa-aattgatgaa-cgtgtcatacttaaataggtgatttggtggctatgtgcat 214  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||   ||||||||  |||||||| || |||| |||| ||||||  | |||||||    
T  45619697 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttgaatggttgatgaattgtgtcataattgaatacgtgacttggtgaatttgtgcat 45619796  T
Q  215 tggtgaaatttgt 227  Q
    |||||||||||||    
T  45619797 tggtgaaatttgt 45619809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 23154411 - 23154504
Alignment:
Q  71 ttacgttagtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaa 164  Q
    |||||||||||||||||| ||| |||||||||||  | ||| |||| | |||||||| ||| |||||| || |||| |||||||||||||||||    
T  23154411 ttacgttagtggattcaatacggtaaaattatctccggaattcaattgataccacatacatatagaagtgtttagaacattgcatgcatttgaa 23154504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 23565668 - 23565761
Alignment:
Q  71 ttacgttagtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaa 164  Q
    |||||||||||||||||| ||| |||||||||||  | ||| |||| | |||||||| ||| |||||| || |||| |||||||||||||||||    
T  23565668 ttacgttagtggattcaatacggtaaaattatctccggaattcaattgataccacatacatatagaagtgtttagaacattgcatgcatttgaa 23565761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 22331210 - 22331163
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttgaa 164  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||    
T  22331210 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttgaa 22331163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 7513679 - 7513725
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  7513679 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 7513725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 42180026 - 42180072
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  42180026 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 42180072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 226
Target Start/End: Complemental strand, 23158028 - 23157846
Alignment:
Q  46 tgcagaacgtaattgaagatgtttattacgttagtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatcta--gaagagtct 143  Q
    |||| |||||| |||  ||||||||||||||| ||||||||| || | |||||||||||    ||||  || |||||||||||||||||  ||||||| |    
T  23158028 tgcaaaacgtatttggtgatgtttattacgttggtggattcataatggtaaaattatctcaagaatcatat-ggtaccacatgcatctatagaagagtat 23157930  T
Q  144 agatcattgcatgcatttgaaaattgatgaa-cgtgtcatacttaaataggtgatttggtggctatgtgcattggtgaaatttg 226  Q
    | |  |||  |||||||||  ||||| |||  ||||||||| || |||| |||||||||||  |||| ||||||||||||||||    
T  23157929 aaaatattatatgcatttgttaattggtgagtcgtgtcataattgaataagtgatttggtgaatatgagcattggtgaaatttg 23157846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 226
Target Start/End: Complemental strand, 23569285 - 23569103
Alignment:
Q  46 tgcagaacgtaattgaagatgtttattacgttagtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatcta--gaagagtct 143  Q
    |||| |||||| |||  ||||||||||||||| ||||||||| || | |||||||||||    ||||  || |||||||||||||||||  ||||||| |    
T  23569285 tgcaaaacgtatttggtgatgtttattacgttggtggattcataatggtaaaattatctcaagaatcatat-ggtaccacatgcatctatagaagagtat 23569187  T
Q  144 agatcattgcatgcatttgaaaattgatgaa-cgtgtcatacttaaataggtgatttggtggctatgtgcattggtgaaatttg 226  Q
    | |  |||  |||||||||  ||||| |||  ||||||||| || |||| |||||||||||  |||| ||||||||||||||||    
T  23569186 aaaatattatatgcatttgttaattggtgagtcgtgtcataattgaataagtgatttggtgaatatgagcattggtgaaatttg 23569103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 160
Target Start/End: Complemental strand, 18994806 - 18994764
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatt 160  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
T  18994806 ggtaccacatgcatctagaagagtctagagcattgcatacatt 18994764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 24533277 - 24533330
Alignment:
Q  120 taccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatga 173  Q
    ||||||||||||||||| ||||||||| |||||||| ||||| | |||||||||    
T  24533277 taccacatgcatctagatgagtctagaacattgcatccatttaataattgatga 24533330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 21652853 - 21652743
Alignment:
Q  118 ggtaccacatgcatctaga--agagtctagatcattgcatgcatttgaa-aattgatga-acgtgtcatacttaaataggtgatttggtggctatgtgca 213  Q
    ||||||||||| |||||||  |||||||||| ||||||||||||||||| | ||| |||  ||||||||| || |||| |||| ||||||  | || |||    
T  21652853 ggtaccacatgtatctagagaagagtctagaacattgcatgcatttgaatacttggtgagtcgtgtcataattgaatatgtgacttggtgaatttgggca 21652754  T
Q  214 ttggtgaaatt 224  Q
    |||||||||||    
T  21652753 ttggtgaaatt 21652743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 24342999 - 24343037
Alignment:
Q  122 ccacatgcatctagaagagtctagatcattgcatgcatt 160  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  24342999 ccacatgcatctagaggagtctagaacattgcatgcatt 24343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 222
Target Start/End: Complemental strand, 23295870 - 23295677
Alignment:
Q  34 ttacattgtttctgcagaacgtaattgaagatgtttattacgttagtggattca-aaacgataaaattatctttgaaatccaatcggtaccacatgcatc 132  Q
    |||||| | ||||||||||| ||||||| ||||||||| | ||| |||||||||  |||| ||||||||||| || ||||| |  |||||||||||||||    
T  23295870 ttacatagcttctgcagaacataattgatgatgtttatcatgttggtggattcattaacggtaaaattatctctggaatcctaatggtaccacatgcatc 23295771  T
Q  133 t--agaagagtctagatcattgcatgcatttgaaaattgatgaa--cgtgtcatacttaaataggtgatttggtggctatgtgcattggtgaaa 222  Q
    |  ||||||||||||| |||| ||||||| ||| | ||| ||||   ||||||||||| | |  |||||||||||  ||||||||||| |||||    
T  23295770 tagagaagagtctagaacattacatgcatctgatatttggtgaaattgtgtcatacttgactgtgtgatttggtgattatgtgcattgatgaaa 23295677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 22595120 - 22595230
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttgaa-aattgatga-acgtgtcatacttaaataggtgatttggtggctatgtgcat 214  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||  ||||||||| || |||| |||| |||||   | |||||||    
T  22595120 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttgaataattgatgagtcgtgtcataattgaatatgtgacttggttaat-tgtgcat 22595218  T
Q  215 tggtgaaatttg 226  Q
    ||||||||||||    
T  22595219 tggtgaaatttg 22595230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 12466178 - 12466286
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatg-aacgtgtcatacttaaataggtgatttggtggctatgtgcattg 216  Q
    |||||||||| |||||||||||||||||| ||||||||||||||| | |||| || || |||||| |||| | || |||||||||||  |||||||||||    
T  12466178 ggtaccacatacatctagaagagtctagaacattgcatgcatttg-agattggtgaaatgtgtcacacttgattatgtgatttggtgattatgtgcattg 12466276  T
Q  217 gtgaaatttg 226  Q
    ||| ||||||    
T  12466277 gtgtaatttg 12466286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 203
Target Start/End: Original strand, 23090284 - 23090438
Alignment:
Q  49 agaacgtaattgaagatgtttattacgttagtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtcta-gat 147  Q
    ||||||||||||| | ||||| |||| | |||||||||| |||| |||||| ||||  ||||||  || ||||||||||| || |||||| ||||| ||     
T  23090284 agaacgtaattgatggtgtttgttac-taagtggattcataacggtaaaatgatctccgaaatcttattggtaccacatgaatgtagaagtgtctaagaa 23090382  T
Q  148 cattgcatgcatttgaaaattgatgaacgtgtcatacttaaataggtgatttggtg 203  Q
    ||||||||||| |||||| ||| |||| |||||||||||  ||| |||| ||||||    
T  23090383 cattgcatgcacttgaaagttggtgaatgtgtcatacttggatatgtgaattggtg 23090438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 31162515 - 31162626
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttg-aaaattgatga-acgtgtcatacttaaataggtgatttggtggctatgtgcat 214  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||   |||||||||  ||||||||| || |||| |||| ||| ||  | |||||||    
T  31162515 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttgtgtaattgatgaggcgtgtcataattgaatatgtgacttgatgaatttgtgcat 31162614  T
Q  215 tggtgaaatttg 226  Q
    ||||| ||||||    
T  31162615 tggtggaatttg 31162626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 19627874 - 19627828
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  19627874 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 19627828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 16374923 - 16374878
Alignment:
Q  119 gtaccacatgcatctagaagagtctagatcattgcatgcatttgaa 164  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||    
T  16374923 gtaccgcatgcatctagaagagtctagaacattgcatgcatttgaa 16374878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 35010941 - 35010986
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||    
T  35010941 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 35010986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 19728999 - 19729039
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgca 158  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  19728999 ggtaccacatgcatctagaagagtctagaacattgcatgca 19729039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 169
Target Start/End: Complemental strand, 24217420 - 24217345
Alignment:
Q  94 taaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattg 169  Q
    ||||||||||| |  ||||| || |||||||||||||| |||||||||||||| |||||||| || |||| |||||    
T  24217420 taaaattatctatagaatcctattggtaccacatgcatttagaagagtctagaacattgcattcacttgataattg 24217345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 17084979 - 17085025
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||| ||||||||||||| |||||||| ||||||||||||||||    
T  17084979 cggtaccgcatgcatctagaaaagtctagaacattgcatgcatttga 17085025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 17858008 - 17858054
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||| ||||||||| |||||||||||||| ||||||||||||||||    
T  17858008 cggtatcacatgcatttagaagagtctagaacattgcatgcatttga 17858054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 11374489 - 11374526
Alignment:
Q  126 atgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  11374489 atgcatctagaagagtctagaacattgcatgcatttga 11374526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 29162148 - 29162185
Alignment:
Q  126 atgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  29162148 atgcatctagaagagtctagaacattgcatgcatttga 29162185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 1560446 - 1560372
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatgaa-cgtgtcatacttaaata 191  Q
    ||||||||||| || |||||||||||||| ||||||| ||| |||  |||||||||| || ||||||||| ||||    
T  1560446 ggtaccacatgtatatagaagagtctagaacattgcaagcaattgttaattgatgaatcgagtcatacttgaata 1560372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 22442606 - 22442500
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatgaacgtgtcatacttaaataggtgatttggtggctatgtgcattgg 217  Q
    |||||||||||||| |||| | ||||| | ||||||||||  |||| | |||   ||| |||||||||| | || |||||||||||  |||||||||| |    
T  22442606 ggtaccacatgcatgtagaggtgtctacaacattgcatgcccttgagatttgtgaaacatgtcatacttgactatgtgatttggtgattatgtgcattag 22442507  T
Q  218 tgaaatt 224  Q
    |||||||    
T  22442506 tgaaatt 22442500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 4173305 - 4173350
Alignment:
Q  116 tcggtaccacatgcatctagaagagtctagatcattgcatgcattt 161  Q
    ||||||| ||||||||||||||| |||||||  |||||||||||||    
T  4173305 tcggtacaacatgcatctagaagtgtctagaatattgcatgcattt 4173350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 12975146 - 12975028
Alignment:
Q  46 tgcagaacgtaattgaagatgtttattacgttag---tggattcaa-aacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagt 141  Q
    |||||||| ||||||| | ||||||||| ||| |   ||||||||  |||| ||||||||| | || ||||| || ||||||||||||||||||||  ||    
T  12975146 tgcagaacataattgatggtgtttattatgttggacgtggattcattaacggtaaaattatatctggaatcctat-ggtaccacatgcatctagaaatgt 12975048  T
Q  142 ctagatcattgcatgcattt 161  Q
    ||||| |||||||| |||||    
T  12975047 ctagaacattgcatacattt 12975028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 5485938 - 5486001
Alignment:
Q  94 taaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgca 158  Q
    |||||||||||| | ||| |||| | ||||||||||| ||||||||| ||||| |||||||||||    
T  5485938 taaaattatcttaggaattcaattg-taccacatgcacctagaagagactagaacattgcatgca 5486001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 14487157 - 14487221
Alignment:
Q  100 tatctttgaaatccaatc-ggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||||||||||||   |||||||||||||| |||| | ||||||| ||||||||||| ||||    
T  14487157 tatctttgaaatccaaaatggtaccacatgcatgtagaggtgtctagaacattgcatgcacttga 14487221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 15509 - 15619
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttgaa-aattgatga-acgtgtcatacttaaataggtgatttggtggctatgtgcatt 215  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||  ||||||||| || |||| |||| ||| ||  | ||||||||    
T  15509 ggtaccacatgcatctagaagagtctagaacattgcatgcatttgaatagttgatgagtcgtgtcataattgaatatgtgacttgttgaatttgtgcatt 15608  T
Q  216 ggtgaaatttg 226  Q
    |||||||||||    
T  15609 ggtgaaatttg 15619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 161
Target Start/End: Original strand, 101023 - 101151
Alignment:
Q  34 ttacattgtttctgcagaacgtaattgaagatgtttattacgttagtggattcaa-aacgataaaattatctttgaaatccaatcggtaccacatgcatc 132  Q
    |||||| | ||||||||||| ||||||  ||||||||||| ||| |||||||||  || |||||||||||||    ||||| |  |||||||||||||||    
T  101023 ttacatggcttctgcagaacataattggtgatgtttattatgttggtggattcattaatgataaaattatctcctgaatcctaatggtaccacatgcatc 101122  T
Q  133 tagaagagtctagatcattgcatgcattt 161  Q
    |||| ||||||||| ||||||||||||||    
T  101123 tagatgagtctagaacattgcatgcattt 101151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 25341045 - 25340929
Alignment:
Q  47 gcagaacgtaattgaagatgtttattacgttagtggattcaa-aacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctag 145  Q
    ||||||| ||||||  || |||||||| ||| |||||||||  |||| ||||||||||| || ||||| |  ||||||||||||||||||| ||||||||    
T  25341045 gcagaacataattggtgacgtttattatgttggtggattcattaacggtaaaattatctctggaatcctaatggtaccacatgcatctagatgagtctag 25340946  T
Q  146 atcattgcatgcatttg 162  Q
    | |||||||||||||||    
T  25340945 aacattgcatgcatttg 25340929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 214
Target Start/End: Complemental strand, 37275880 - 37275744
Alignment:
Q  79 gtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatga-acgt 177  Q
    |||||||||| ||| |||||||||||  | |||||||| ||||||||||| || |||||||| ||||| ||||||||||| |||| ||||| |||   ||    
T  37275880 gtggattcaatacggtaaaattatctccggaatccaattggtaccacatgtatttagaagagcctagaacattgcatgcacttgataattggtgagttgt 37275781  T
Q  178 gtcatacttaaataggtgatttggtggctatgtgcat 214  Q
    ||||||||| | || |||| ||||||  |||||||||    
T  37275780 gtcatacttgactatgtgaattggtgattatgtgcat 37275744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 14343505 - 14343552
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttgaa 164  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||    
T  14343505 cggtaccacatgcatctagaagagtctggaacattgcatgcatttgaa 14343552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 34937994 - 34937949
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||    
T  34937994 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 34937949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 37278136 - 37278015
Alignment:
Q  94 taaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatga-acgtgtcatacttaaatag 192  Q
    |||||||||||  | |||||||| |||||||| || ||||| ||||||||||| ||||||||||| |||| ||||| |||   ||||||||||| | ||     
T  37278136 taaaattatctccggaatccaattggtaccacgtgtatctaaaagagtctagaacattgcatgcacttgataattggtgagttgtgtcatacttgactat 37278037  T
Q  193 gtgatttggtggctatgtgcat 214  Q
    |||| ||||||  |||||||||    
T  37278036 gtgaattggtgattatgtgcat 37278015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 17301886 - 17301994
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatgaacgtgtcatacttaaataggtgatttggtggctatgtgcattgg 217  Q
    |||||||||||||| |||| | ||||||| ||||||||| | |||| | |||   |||||||||||||| | || |||||||||||  |||||| || ||    
T  17301886 ggtaccacatgcatgtagaggtgtctagaacattgcatgtacttgagatttgtgaaacgtgtcatacttgactatgtgatttggtgattatgtgtatagg 17301985  T
Q  218 tgaaatttg 226  Q
    |||||||||    
T  17301986 tgaaatttg 17301994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 19318094 - 19318165
Alignment:
Q  89 aacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcattt 161  Q
    |||| |||||| |||| |||||||  || ||||||||||||||||||||||||||||| |||| |||||||||    
T  19318094 aacggtaaaatcatctctgaaatcttat-ggtaccacatgcatctagaagagtctagaacattacatgcattt 19318165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 11765049 - 11765096
Alignment:
Q  116 tcggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    |||||||| |||||||||||||||||||||| |||| |||||||||||    
T  11765049 tcggtaccgcatgcatctagaagagtctagaacatttcatgcatttga 11765096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 16837014 - 16837051
Alignment:
Q  125 catgcatctagaagagtctagatcattgcatgcatttg 162  Q
    |||||||||||||||||||||| |||||||||||||||    
T  16837014 catgcatctagaagagtctagaacattgcatgcatttg 16837051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 18532420 - 18532458
Alignment:
Q  122 ccacatgcatctagaagagtctagatcattgcatgcatt 160  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  18532420 ccacatgcatctagaggagtctagaacattgcatgcatt 18532458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 22055384 - 22055422
Alignment:
Q  122 ccacatgcatctagaagagtctagatcattgcatgcatt 160  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  22055384 ccacatgcatctagaggagtctagaacattgcatgcatt 22055422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 43 - 163
Target Start/End: Original strand, 3742 - 3865
Alignment:
Q  43 ttctgcagaacgtaattgaagatgtttattacgttagtggattcaa-aacgataaaattatctttgaaatccaatcggtaccacatgcatctaga--aga 139  Q
    ||||||||||| |||||||  |||||||||| ||| |||||||||  |||| | |||||||||  | ||||| || |||||||||||||| ||||  |||    
T  3742 ttctgcagaacataattgataatgtttattatgttggtggattcattaacggtgaaattatctccggaatcctattggtaccacatgcatttagagaaga 3841  T
Q  140 gtctagatcattgcatgcatttga 163  Q
    ||||||| ||||||||||||||||    
T  3842 gtctagaacattgcatgcatttga 3865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 4130 - 4249
Alignment:
Q  109 aatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatga-acgtgtcat-acttaaataggtgatttggtggct 206  Q
    |||||||  |||||||||||||||||||||||||||||  |||||||||| |||  ||||| |||  |||||||| | ||||||| |||| ||||||  |    
T  4130 aatccaaatggtaccacatgcatctagaagagtctagaatattgcatgcacttgttaattggtgattcgtgtcataaattaaataagtgacttggtgaat 4229  T
Q  207 atgtgcattggtgaaatttg 226  Q
    ||||||||| ||||||||||    
T  4230 atgtgcattagtgaaatttg 4249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 226
Target Start/End: Complemental strand, 20263 - 20153
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttgaa-aattgatga-acgtgtcatacttaaataggtgatttggtggctatgtgcat 214  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||  ||||||||| || | || |||| |||||   | |||||||    
T  20263 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttgaataattgatgagtcgtgtcataattgattatgtgacttggttaat-tgtgcat 20165  T
Q  215 tggtgaaatttg 226  Q
    ||||||||||||    
T  20164 tggtgaaatttg 20153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 216
Target Start/End: Complemental strand, 46842 - 46696
Alignment:
Q  70 attacgttagtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattg 169  Q
    ||||||||||||||||||| ||  ||||||||||  || |||||| | |||||||||||||| |||||  ||||||  |||||||||||||||||  ||     
T  46842 attacgttagtggattcaatacagtaaaattatccctggaatccatttggtaccacatgcatgtagaaatgtctagtacattgcatgcatttgaagttt- 46744  T
Q  170 atgaac-gtgtcatacttaaataggtgatttggtggctatgtgcattg 216  Q
    |||||  ||||||| ||| |||| |||| ||||||  |||||||||||    
T  46743 atgaaatgtgtcatgcttgaatatgtgacttggtgtatatgtgcattg 46696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 34092 - 33936
Alignment:
Q  11 gaagaatataattgccgatgttt-ttacattgtttctgcagaacgtaattgaagatgtttattacgttagtggattca-aaacgataaaattatctttga 108  Q
    ||||||| ||||||  ||||||| |||||| | ||||||||||| ||||||  ||||||||||| ||| |||||||||  |||| |||||||||||  |     
T  34092 gaagaatgtaattgatgatgtttattacatagcttctgcagaacataattggtgatgtttattatgttggtggattcattaacggtaaaattatctccgg 33993  T
Q  109 aatccaatcggtaccacatgcatct--agaagagtctagatcattgcatgcatttga 163  Q
    ||||| |  ||||||| | ||||||  ||||||||||||| ||||||||||| ||||    
T  33992 aatcctaatggtaccataagcatctagagaagagtctagaacattgcatgcacttga 33936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 33904 - 33771
Alignment:
Q  89 aacgataaaattatctttgaaatccaatcggtaccacatgcatctaga--agagtctagatcattgcatgcatttgaaaattgatgaa--cgtgtcatac 184  Q
    |||| |||||||||||  | ||||| |  |||||||||||||||||||  |||||||||| |||||||||||||||| | ||  ||||   |||| ||||    
T  33904 aacggtaaaattatctccggaatcctaatggtaccacatgcatctagagaagagtctagaacattgcatgcatttgatatttcgtgaaattgtgttatac 33805  T
Q  185 ttaaataggtgatttggtggctatgtgcattggt 218  Q
    || | || |||||||||||  |||||||||||||    
T  33804 ttgactatgtgatttggtgattatgtgcattggt 33771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 200824 - 200929
Alignment:
Q  119 gtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatga-acgtgtcat-acttaaataggtgatttggtggctatgtgcattg 216  Q
    |||||||||||||||||| ||||||||| ||||||||||| |||  ||||| |||  |||||||| | || |||| |||||||||||  |||||||||||    
T  200824 gtaccacatgcatctagaggagtctagaacattgcatgcacttgttaattggtgagtcgtgtcataaatttaataagtgatttggtgattatgtgcattg 200923  T
Q  217 gtgaaa 222  Q
    ||||||    
T  200924 gtgaaa 200929  T

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Target: scaffold1869 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1869
Description:

Target: scaffold1869; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 894 - 798
Alignment:
Q  63 gatgtttattacgttagtggattcaaaa-cgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgca 158  Q
    ||||||||||| ||| |||||||||  | ||||||||||||||| | ||||| || | ||||| |||||||||||||||| |||| |||||||||||    
T  894 gatgtttattatgtttgtggattcattagcgataaaattatcttcggaatcctattgctaccatatgcatctagaagagtttagaacattgcatgca 798  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 222
Target Start/End: Complemental strand, 11845203 - 11845053
Alignment:
Q  71 ttacgttagtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattga 170  Q
    ||||||| ||||||||| | || |||||||||||   |||| |||| |||||||||||||| |||||| |||||||  |||||||||| ||| | ||||     
T  11845203 ttacgttggtggattcata-cggtaaaattatctcccaaattcaattggtaccacatgcatgtagaagtgtctagaatattgcatgcacttg-agattgg 11845106  T
Q  171 tg-aacgtgtcatacttaaataggtgatttggtggctatgtgcattggtgaaa 222  Q
    || || ||||| ||||| | || |||||||||||  |||||||||||||||||    
T  11845105 tgaaatgtgtcgtacttgactatgtgatttggtgattatgtgcattggtgaaa 11845053  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 20252742 - 20252696
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  20252742 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 20252696  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 33395884 - 33395838
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  33395884 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 33395838  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 161
Target Start/End: Original strand, 21199238 - 21199281
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcattt 161  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  21199238 ggtaccacatgcatctagacgagtctagaacattgcatgcattt 21199281  T

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Target: scaffold0396 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 163 - 210
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttgaa 164  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||    
T  163 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttgaa 210  T

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Target: scaffold0299 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 222
Target Start/End: Original strand, 9646 - 9795
Alignment:
Q  77 tagtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatct--agaagagtctagatcattgcatgcatttgaaaattgatgaa 174  Q
    |||||||||||| ||| ||||||||||| |||||||| |  | ||||||||||||||  |||||||||||||  ||| |||||||||||  || | ||||    
T  9646 tagtggattcaatacgctaaaattatctctgaaatcctaatgataccacatgcatctagagaagagtctagaaaattccatgcatttgatgataggtgaa 9745  T
Q  175 --cgtgtcatacttaaataggtgatttggtggctatgtgcattggtgaaa 222  Q
        |||||||||| | || |||||||||||  |||||||||||| ||||    
T  9746 attatgtcatacttgactatgtgatttggtgattatgtgcattggcgaaa 9795  T

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Target: scaffold0158 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 23412 - 23366
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  23412 cggtaccgcatgcatctagaagagtcttgatcattgcatgcatttga 23366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 26850 - 26804
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  26850 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 26804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 27865 - 27819
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  27865 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 27819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 39861 - 39815
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  39861 cggtaccgcatgcatctagaagagtctagaacattgcatgcatttga 39815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 256039 - 256085
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttgaa 164  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||    
T  256039 ggtaccgcatgcatctagaagagtctagaacattgcatgcatttgaa 256085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 5921 - 5850
Alignment:
Q  89 aacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcattt 161  Q
    ||||||||||| ||||  | ||||| || ||||||||||||||||||||| ||||||| ||||||||||||||    
T  5921 aacgataaaatcatctccggaatcctat-ggtaccacatgcatctagaagggtctagaacattgcatgcattt 5850  T

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Target: scaffold0468 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 12630 - 12730
Alignment:
Q  128 gcatctagaagagtctagatcattgcatgcatttgaa-aattgatga-acgtgtcatacttaaataggtgatttggtggctatgtgcattggtgaaattt 225  Q
    ||||||||||||||||||| ||||||||||||||||| | |||||||  ||||| ||| || |||| |||| ||| ||  | ||||||||||||||||||    
T  12630 gcatctagaagagtctagaacattgcatgcatttgaatagttgatgagtcgtgtaataattgaatatgtgacttgttgaatttgtgcattggtgaaattt 12729  T
Q  226 g 226  Q
    |    
T  12730 g 12730  T

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Target: scaffold0086 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 11061 - 11169
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttgaaaattgatgaacgtgtcatacttaaataggtgatttggtggctatgtgcattgg 217  Q
    |||||||||||||| |||||| ||||||| ||||||||||||||| |  ||| |||| ||||  || || || | |||| ||||||  |||||||| |||    
T  11061 ggtaccacatgcatgtagaagtgtctagaacattgcatgcatttggagtttggtgaatgtgttctaattgaaaatgtgagttggtgaatatgtgcaatgg 11160  T
Q  218 tgaaatttg 226  Q
    |||||||||    
T  11161 tgaaatttg 11169  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 26007 - 26078
Alignment:
Q  89 aacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtctagatcattgcatgcattt 161  Q
    |||| ||||||||||| || ||||| || | ||||||||||||||||||||||||||| ||| ||||||||||    
T  26007 aacggtaaaattatctctggaatcctat-gataccacatgcatctagaagagtctagaacatagcatgcattt 26078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 226
Target Start/End: Complemental strand, 28955 - 28805
Alignment:
Q  77 tagtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatctagaagagtcta-gatcattgcatgcatttgaaaattgatga-a 174  Q
    |||||||||||| ||| |||||||||||  | |||||| | |||||||||||||  |||||| ||||| || |||| |||||| |||||  ||| ||| |    
T  28955 tagtggattcaatacggtaaaattatctccggaatccagttggtaccacatgcaggtagaagtgtctaagaacattacatgcacttgaat-ttggtgaga 28857  T
Q  175 cgtgtcatacttaaataggtgatttggtggctatgtgcattggtgaaatttg 226  Q
     |||||||| || |||| |||| ||| ||  |||||||||||||||||||||    
T  28856 tgtgtcataattgaatatgtgacttgatgaatatgtgcattggtgaaatttg 28805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 14586 - 14632
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttgaa 164  Q
    |||||| ||||||||||||| |||||||| |||||||||||||||||    
T  14586 ggtaccgcatgcatctagaatagtctagaacattgcatgcatttgaa 14632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 312 - 358
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    ||||||| |||||||||||||||||||||| |||| |||||||||||    
T  312 cggtaccgcatgcatctagaagagtctagaacatttcatgcatttga 358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 36419 - 36465
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttgaa 164  Q
    |||||| ||||||| |||||||||||||| |||||||||||||||||    
T  36419 ggtaccgcatgcatatagaagagtctagaacattgcatgcatttgaa 36465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 12255 - 12210
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttg 162  Q
    ||||||| |||||||||||||| ||||||| |||||||||||||||    
T  12255 cggtaccgcatgcatctagaagggtctagaacattgcatgcatttg 12210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 11170 - 11125
Alignment:
Q  118 ggtaccacatgcatctagaagagtctagatcattgcatgcatttga 163  Q
    |||||| ||||||||| |||||||||||| ||||||||||||||||    
T  11170 ggtaccgcatgcatcttgaagagtctagaacattgcatgcatttga 11125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 9326 - 9280
Alignment:
Q  117 cggtaccacatgcatctagaagagtctagatcattgcatgcatttgaa 164  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||||||    
T  9326 cggtaccgcatgcatctaaaagagtctaga-cattgcatgcatttgaa 9280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 164
Target Start/End: Original strand, 20556 - 20643
Alignment:
Q  79 gtggattcaaaacgataaaattatctttgaaatccaatcggtaccacatgcatct--agaagagtctagatcattgcatgcatttgaa 164  Q
    |||||||||| ||| ||| ||||| |  | |||||||  ||||||||||||||||  ||||||||||||| || |||| |||||||||    
T  20556 gtggattcaatacggtaagattatatccggaatccaactggtaccacatgcatctagagaagagtctagaacactgcaagcatttgaa 20643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 295583 - 295654
Alignment:
Q  94 taaaattatctttgaaatccaatcggtaccacatgcatct--agaagagtctagatcattgcatgcatttga 163  Q
    ||||||||||| |||||||| |  | ||||||||||||||  |||||||||||||  ||| |||||||||||    
T  295583 taaaattatctctgaaatcctaatgataccacatgcatctagagaagagtctagaaaattccatgcatttga 295654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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