View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13960_low_20 (Length: 237)
Name: NF13960_low_20
Description: NF13960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13960_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 47038102 - 47038322
Alignment:
| Q |
1 |
tcaataatattaaacctctaagtgaaaaagcattaataatcttcaggttctggaaacttgttcaaatcaggtttcacatcagcgttgaattgatcggaat |
100 |
Q |
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| T |
47038102 |
tcaataatattaaacctctaagtgaaaaagcattaataatcttcaggttctggaaacttgttcaaatcaggtttcacatcagcgttgaattgatcggaat |
47038201 |
T |
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| Q |
101 |
cagaacgagaagaagcttcaagagccgcttgaagagcatcaactctagcaccgactttggtagcttttttgcgtattaaatcagcagacatgttaccttg |
200 |
Q |
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| T |
47038202 |
cagaacgagaagaagcttgaagagccgcttgaagagcatcaactctagcaccgactttggtagcttttttgcgtattaaatcagcagacatgttaccttg |
47038301 |
T |
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| Q |
201 |
ctgaatagaaccgtcgttgtt |
221 |
Q |
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||||||||||||||| ||||| |
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| T |
47038302 |
ctgaatagaaccgtccttgtt |
47038322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 6026885 - 6026845
Alignment:
| Q |
127 |
gcttgaagagcatcaactctagcaccgactttggtagcttt |
167 |
Q |
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| T |
6026885 |
gcttgaagagcatcaactctagcaccaacttcagtagcttt |
6026845 |
T |
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