View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13960_low_23 (Length: 226)
Name: NF13960_low_23
Description: NF13960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13960_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2287383 - 2287164
Alignment:
| Q |
1 |
ctttctatcaagtggaatatctttctcattcttaatatgctaagacttcaacatcaaatggttctctcttcctcgtgttcattctttctttggcttctca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2287383 |
ctttctatcaagtggaatatctttctcattcttaatatgctaagacttcaacatcaaatggttctctcttcctcgtgttcattctttctttggcttctca |
2287284 |
T |
|
| Q |
101 |
ttttatcagcaacattttctctaggtaggtactttattgatatttataaaattttgctttgatgtttcatagaaaaaggtacttatttgcaattaaggac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2287283 |
ttttatcagcaacattttctctaggtaggtactttattgatatttataaaattttgctttgatgtttcatagaaaaaggtacttatttgcaattaaggac |
2287184 |
T |
|
| Q |
201 |
atttctgtaattataccact |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
2287183 |
atttctgtaattataccact |
2287164 |
T |
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