View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13960_low_24 (Length: 225)

Name: NF13960_low_24
Description: NF13960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13960_low_24
NF13960_low_24
[»] chr1 (6 HSPs)
chr1 (135-225)||(49687174-49687264)
chr1 (1-79)||(49687262-49687340)
chr1 (75-163)||(49691395-49691483)
chr1 (75-163)||(49680376-49680464)
chr1 (1-40)||(39462258-39462297)
chr1 (4-40)||(28201911-28201947)
[»] chr3 (3 HSPs)
chr3 (1-40)||(48362147-48362186)
chr3 (1-40)||(32218836-32218875)
chr3 (1-40)||(32264541-32264580)
[»] chr5 (5 HSPs)
chr5 (1-42)||(661247-661288)
chr5 (1-40)||(659713-659752)
chr5 (1-40)||(20504413-20504452)
chr5 (1-40)||(20507962-20508001)
chr5 (1-40)||(21947770-21947809)
[»] chr7 (2 HSPs)
chr7 (1-40)||(22392292-22392331)
chr7 (2-40)||(42006316-42006354)
[»] chr6 (1 HSPs)
chr6 (1-40)||(1072356-1072395)
[»] chr4 (2 HSPs)
chr4 (9-40)||(619955-619986)
chr4 (1-39)||(47274522-47274560)
[»] chr2 (2 HSPs)
chr2 (1-40)||(40032547-40032586)
chr2 (1-37)||(6259315-6259351)
[»] scaffold0339 (1 HSPs)
scaffold0339 (1-39)||(3747-3785)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 49687264 - 49687174
Alignment:
Q  135 caagttgaacttctacccttcctgcataaccaattcaatagaagcagttgtgtctgattagtatagtgatgctaagctaatcaagtgtcat 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  49687264 caagttgaacttctacccttcctgcataaccaattcaatagaagcggttgtgtctgattagtatagtgatgctaagctaatcaagtgtcat 49687174  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 49687340 - 49687262
Alignment:
Q  1 cacgatttctacataacctgattttaagttaactctcacagagtatatgtgcatacatcagttatgtttggaagcacaa 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49687340 cacgatttctacataacctgattttaagttaactctcacagagtatatgtgcatacatcagttatgtttggaagcacaa 49687262  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 75 - 163
Target Start/End: Complemental strand, 49691483 - 49691395
Alignment:
Q  75 cacaaactagttatgtgaaacattaaaatatgtacatcacctaaaaccactcctagcttccaagttgaacttctacccttcctgcataa 163  Q
    |||||||||||||| |  ||||||||| ||||||||||||||||||||| ||||||||||| || || |||||||||||||||||||||    
T  49691483 cacaaactagttatattgaacattaaagtatgtacatcacctaaaaccaatcctagcttccgagctggacttctacccttcctgcataa 49691395  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 75 - 163
Target Start/End: Complemental strand, 49680464 - 49680376
Alignment:
Q  75 cacaaactagttatgtgaaacattaaaatatgtacatcacctaaaaccactcctagcttccaagttgaacttctacccttcctgcataa 163  Q
    |||||||||||| | |  || |||||| | ||||||||||||||||||| |  ||||||||||||||||||||||||| ||||||||||    
T  49680464 cacaaactagttgtattgaatattaaagtttgtacatcacctaaaaccaatattagcttccaagttgaacttctacccctcctgcataa 49680376  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 39462297 - 39462258
Alignment:
Q  1 cacgatttctacataacctgattttaagttaactctcaca 40  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  39462297 cacgatttctgcagaacctgattttaagttaactctcaca 39462258  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 28201911 - 28201947
Alignment:
Q  4 gatttctacataacctgattttaagttaactctcaca 40  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  28201911 gatttctacagaacatgattttaagttaactctcaca 28201947  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 48362147 - 48362186
Alignment:
Q  1 cacgatttctacataacctgattttaagttaactctcaca 40  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  48362147 cacgatttctacagaacctgattttaagttaactctcaca 48362186  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 32218875 - 32218836
Alignment:
Q  1 cacgatttctacataacctgattttaagttaactctcaca 40  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  32218875 cacgatttctgcagaacctgattttaagttaactctcaca 32218836  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 32264541 - 32264580
Alignment:
Q  1 cacgatttctacataacctgattttaagttaactctcaca 40  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  32264541 cacgatttctgcaaaacctgattttaagttaactctcaca 32264580  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 661247 - 661288
Alignment:
Q  1 cacgatttctacataacctgattttaagttaactctcacaga 42  Q
    |||||||||| || ||||||||||||||||||||||||||||    
T  661247 cacgatttctgcagaacctgattttaagttaactctcacaga 661288  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 659752 - 659713
Alignment:
Q  1 cacgatttctacataacctgattttaagttaactctcaca 40  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  659752 cacgatttctgcagaacctgattttaagttaactctcaca 659713  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 20504413 - 20504452
Alignment:
Q  1 cacgatttctacataacctgattttaagttaactctcaca 40  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  20504413 cacgatttctgcagaacctgattttaagttaactctcaca 20504452  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 20507962 - 20508001
Alignment:
Q  1 cacgatttctacataacctgattttaagttaactctcaca 40  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  20507962 cacgatttctgcagaacctgattttaagttaactctcaca 20508001  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 21947809 - 21947770
Alignment:
Q  1 cacgatttctacataacctgattttaagttaactctcaca 40  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  21947809 cacgatttctgcagaacctgattttaagttaactctcaca 21947770  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 22392331 - 22392292
Alignment:
Q  1 cacgatttctacataacctgattttaagttaactctcaca 40  Q
    |||||||||| |||||||||||||||| ||||||||||||    
T  22392331 cacgatttctccataacctgattttaaattaactctcaca 22392292  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 42006354 - 42006316
Alignment:
Q  2 acgatttctacataacctgattttaagttaactctcaca 40  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  42006354 acgatttctccaaaacctgattttaagttaactctcaca 42006316  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 1072356 - 1072395
Alignment:
Q  1 cacgatttctacataacctgattttaagttaactctcaca 40  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  1072356 cacgatttctgcagaacctgattttaagttaactctcaca 1072395  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 619955 - 619986
Alignment:
Q  9 ctacataacctgattttaagttaactctcaca 40  Q
    ||||||||||||||||||||||||||||||||    
T  619955 ctacataacctgattttaagttaactctcaca 619986  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 47274560 - 47274522
Alignment:
Q  1 cacgatttctacataacctgattttaagttaactctcac 39  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  47274560 cacgatttctacatatcctaattttaagttaactctcac 47274522  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 40032547 - 40032586
Alignment:
Q  1 cacgatttctacataacctgattttaagttaactctcaca 40  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  40032547 cacgatttctgcagaacctgattttaagttaactctcaca 40032586  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6259315 - 6259351
Alignment:
Q  1 cacgatttctacataacctgattttaagttaactctc 37  Q
    |||||||||| || |||||||||||||||||||||||    
T  6259315 cacgatttctgcagaacctgattttaagttaactctc 6259351  T

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Target: scaffold0339 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 3785 - 3747
Alignment:
Q  1 cacgatttctacataacctgattttaagttaactctcac 39  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  3785 cacgatttctacatatcctaattttaagttaactctcac 3747  T

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