View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13960_low_3 (Length: 451)

Name: NF13960_low_3
Description: NF13960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13960_low_3
NF13960_low_3
[»] chr3 (2 HSPs)
chr3 (1-438)||(26716182-26716629)
chr3 (4-270)||(26739573-26739839)
[»] chr7 (9 HSPs)
chr7 (213-257)||(1706685-1706729)
chr7 (169-261)||(13597026-13597118)
chr7 (194-270)||(47295177-47295253)
chr7 (203-262)||(23039972-23040031)
chr7 (59-91)||(47300202-47300234)
chr7 (202-254)||(47300340-47300392)
chr7 (205-264)||(33034670-33034729)
chr7 (209-254)||(35721068-35721113)
chr7 (59-91)||(47295049-47295081)
[»] chr2 (3 HSPs)
chr2 (191-270)||(6742866-6742945)
chr2 (212-269)||(26370561-26370618)
chr2 (194-262)||(3981701-3981769)
[»] chr4 (3 HSPs)
chr4 (208-270)||(47739031-47739093)
chr4 (191-254)||(48026023-48026086)
chr4 (212-269)||(32663793-32663850)
[»] chr5 (3 HSPs)
chr5 (206-265)||(4852146-4852205)
chr5 (194-261)||(16985559-16985626)
chr5 (213-262)||(21743106-21743155)
[»] chr1 (2 HSPs)
chr1 (397-438)||(15575622-15575663)
chr1 (128-269)||(20491520-20491660)
[»] chr6 (2 HSPs)
chr6 (129-261)||(4084537-4084668)
chr6 (214-263)||(3840572-3840621)
[»] chr8 (3 HSPs)
chr8 (212-270)||(96227-96285)
chr8 (219-265)||(39118034-39118080)
chr8 (212-269)||(10544064-10544121)


Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 26716629 - 26716182
Alignment:
Q  1 gtcttgagttggatacgaagagagtggtcgatagtttcttatctctaaaacatggctctacataatttggaattattatccaaaattgtaagacaatccg 100  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  26716629 gtcttgagttggatgcgaagagagtggttgatagtttcttatctctaaaacatggctctacataatttgggattactatccaaaattgtaagacaatccg 26716530  T
Q  101 taagcaattttataaaaactaaggtgctgagtttgtccggagacgagcaaaacgaggttgcttacaatttagctaaggcgtctatattaccaactagttt 200  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26716529 taagcaattttataaaaactaaggtgttgagtttgtgcggagacgagcaaaacgaggttgcttacaatttagctaaggcgtctatattaccaactagttt 26716430  T
Q  201 gtagattttggttgaaataccaaattatattaaatacattttgattaatgaaatgctataagtttgtttcaccaaagnnnnnnnnnttagtaccttcatt 300  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||    
T  26716429 gtagattttggttgaaataccaaattatattaaacacattttgattaatgaaatgctataagtttgtttcaccaaagaaaaaaacattagtaccttcatt 26716330  T
Q  301 agatagttttcaggaagnnnnnnnnnnnnctgcttcaagtgaaaaactgtttttaattatttccgaccacaag-------------ttttttcgtgatat 387  Q
    ||||||||||| |||||            ||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||    
T  26716329 agatagttttcgggaag--aaaaaaaaaactgcttcaagtgaaaaactgtttttaattatttccgaccacaagttttttcttgtgtttttttcgtgatat 26716232  T
Q  388 ccctgcctgaatgcgacgttgtgttgttcattatctttgtgcgacgttgtt 438  Q
    ||||| |||| ||||||||||||||||||||||||||||||||| ||||||    
T  26716231 ccctg-ctgagtgcgacgttgtgttgttcattatctttgtgcgatgttgtt 26716182  T

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Target: chr3; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 4 - 270
Target Start/End: Complemental strand, 26739839 - 26739573
Alignment:
Q  4 ttgagttggatacgaagagagtggtcgatagtttcttatctctaaaacatggctctacataatttggaattattatccaaaattgtaagacaatccgtaa 103  Q
    ||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||| ||||||||| |||    
T  26739839 ttgagttggatgcgaagagagtggttgatagtttcttatctccaaaacatggctctacataatttgggattactatccaaaattgttagacaatccttaa 26739740  T
Q  104 gcaattttataaaaactaaggtgctgagtttgtccggagacgagcaaaacgaggttgct-tacaatttagctaaggcgtctatattaccaactagtttgt 202  Q
    |||||||||| |||||||||||| ||||||||| ||||||| ||  |||||| ||| || |||||||||||||||| ||  |||||||||||||||||||    
T  26739739 gcaattttatgaaaactaaggtgttgagtttgtgcggagacaag-taaacgaagttcctgtacaatttagctaaggtgttcatattaccaactagtttgt 26739641  T
Q  203 agattttggttgaaataccaaattatattaaatacattttgattaatgaaatgctataagtttgtttc 270  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||| |||||    
T  26739640 agattttggttgaaataccaaattatattaaacacattttcattaatgaaatgatataagttggtttc 26739573  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 1706685 - 1706729
Alignment:
Q  213 tgaaataccaaattatattaaatacattttgattaatgaaatgct 257  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  1706685 tgaaataccaaattatattaaagacattttgattaatgaaatgct 1706729  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 261
Target Start/End: Original strand, 13597026 - 13597118
Alignment:
Q  169 ttagctaaggcgtctatattaccaactagtttgtagattttggttgaaataccaaattatattaaatacattttgattaatgaaatgctataa 261  Q
    |||||||||||| | ||||   |||||||||| ||||||||| | |||||||||||||||||| || ||||||| || ||||||||| |||||    
T  13597026 ttagctaaggcggccatatcctcaactagtttctagattttgttagaaataccaaattatattgaacacattttaatcaatgaaatggtataa 13597118  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 47295177 - 47295253
Alignment:
Q  194 ctagtttgtagattttggttgaaataccaaattatattaaatacattttgattaatgaaatgctataagtttgtttc 270  Q
    ||||||| |||||||||||| |||||||||||| |||| ||||||| || |||||||||||  ||||||| ||||||    
T  47295177 ctagtttttagattttggttaaaataccaaattgtattgaatacatcttaattaatgaaattttataagtatgtttc 47295253  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 23040031 - 23039972
Alignment:
Q  203 agattttggttgaaataccaaattatattaaatacattttgattaatgaaatgctataag 262  Q
    |||||||||| ||||||||| ||||||||||| ||||||| | |||||||||| ||||||    
T  23040031 agattttggtagaaataccatattatattaaacacattttaagtaatgaaatgatataag 23039972  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 47300202 - 47300234
Alignment:
Q  59 tacataatttggaattattatccaaaattgtaa 91  Q
    |||||||||||||||||||||||||||||||||    
T  47300202 tacataatttggaattattatccaaaattgtaa 47300234  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 47300340 - 47300392
Alignment:
Q  202 tagattttggttgaaataccaaattatattaaatacattttgattaatgaaat 254  Q
    ||||||||||||||||||| ||||| |||| || || ||||||||||||||||    
T  47300340 tagattttggttgaaatactaaattgtattgaacacgttttgattaatgaaat 47300392  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 33034729 - 33034670
Alignment:
Q  205 attttggttgaaataccaaattatattaaatacattttgattaatgaaatgctataagtt 264  Q
    ||||||||||| ||||||| || ||  ||| ||||||||||||||||||| |||||||||    
T  33034729 attttggttgatataccaagttgtaccaaacacattttgattaatgaaatactataagtt 33034670  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 35721113 - 35721068
Alignment:
Q  209 tggttgaaataccaaattatattaaatacattttgattaatgaaat 254  Q
    ||||||| |||||||||| ||||||| |||||||||||||| ||||    
T  35721113 tggttgatataccaaattgtattaaacacattttgattaataaaat 35721068  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 47295049 - 47295081
Alignment:
Q  59 tacataatttggaattattatccaaaattgtaa 91  Q
    ||||||||||||||||||||| |||||||||||    
T  47295049 tacataatttggaattattattcaaaattgtaa 47295081  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 6742945 - 6742866
Alignment:
Q  191 caactagtttgtagattttggttgaaataccaaattatattaaatacattttgattaatgaaatgctataagtttgtttc 270  Q
    |||||||||| |||||||||||| | |||| ||||| |||| || |||| || |||||||||||||||||||||| ||||    
T  6742945 caactagtttttagattttggttaatatactaaattgtattgaacacatcttaattaatgaaatgctataagtttatttc 6742866  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 26370561 - 26370618
Alignment:
Q  212 ttgaaataccaaattatattaaatacattttgattaatgaaatgctataagtttgttt 269  Q
    ||||||||||||||| |||| || | | |||||||||||||||| |||||||| ||||    
T  26370561 ttgaaataccaaattgtattgaaaatactttgattaatgaaatgttataagttcgttt 26370618  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 3981769 - 3981701
Alignment:
Q  194 ctagtttgtagattttggttgaaataccaaattatattaaatacattttgattaatgaaatgctataag 262  Q
    |||||||  ||||| ||||| | |||||| | | |||| || |||||||||||||||||||||||||||    
T  3981769 ctagtttccagattctggttaatataccagaatgtattgaacacattttgattaatgaaatgctataag 3981701  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 208 - 270
Target Start/End: Complemental strand, 47739093 - 47739031
Alignment:
Q  208 ttggttgaaataccaaattatattaaatacattttgattaatgaaatgctataagtttgtttc 270  Q
    |||||||| |||||||||| | || || |||||||||||||||||||| ||||||||||||||    
T  47739093 ttggttgatataccaaattgtgttgaacacattttgattaatgaaatgttataagtttgtttc 47739031  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 48026086 - 48026023
Alignment:
Q  191 caactagtttgtagattttggttgaaataccaaattatattaaatacattttgattaatgaaat 254  Q
    |||||||||| ||||||||||| ||||||||| ||| |||| || ||||||| | |||||||||    
T  48026086 caactagtttttagattttggtagaaataccagattgtattgaacacattttaagtaatgaaat 48026023  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 32663793 - 32663850
Alignment:
Q  212 ttgaaataccaaattatattaaatacattttgattaatgaaatgctataagtttgttt 269  Q
    ||||||||||| ||| |||| || | | |||||||||||||||| |||||||||||||    
T  32663793 ttgaaataccagattgtattgaaaatactttgattaatgaaatgatataagtttgttt 32663850  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 265
Target Start/End: Complemental strand, 4852205 - 4852146
Alignment:
Q  206 ttttggttgaaataccaaattatattaaatacattttgattaatgaaatgctataagttt 265  Q
    |||||||||| ||| |||||| |||| || |||||||||||||||||||| |||||||||    
T  4852205 ttttggttgacatatcaaattgtattgaacacattttgattaatgaaatgttataagttt 4852146  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 16985559 - 16985626
Alignment:
Q  194 ctagtttgtagattttggttgaaataccaaattatattaaatacattttgattaatgaaatgctataa 261  Q
    ||||||| ||||| || ||| | |||||||||| |||| || | ||||||||||||||||||||||||    
T  16985559 ctagtttttagatattagttaatataccaaattgtattgaacatattttgattaatgaaatgctataa 16985626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 21743106 - 21743155
Alignment:
Q  213 tgaaataccaaattatattaaatacattttgattaatgaaatgctataag 262  Q
    |||||||||| ||| ||||||| |||||||||||||||| ||||| ||||    
T  21743106 tgaaataccatattgtattaaacacattttgattaatgatatgctttaag 21743155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 397 - 438
Target Start/End: Original strand, 15575622 - 15575663
Alignment:
Q  397 aatgcgacgttgtgttgttcattatctttgtgcgacgttgtt 438  Q
    ||||||||||||| |||||||||||| |||||||||||||||    
T  15575622 aatgcgacgttgttttgttcattatcgttgtgcgacgttgtt 15575663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 269
Target Start/End: Original strand, 20491520 - 20491660
Alignment:
Q  128 tgagtttgtccggagacgagcaaaacgaggttgcttacaatttagctaaggcgtctatattaccaactagtttgtagattttggttgaaataccaaatta 227  Q
    ||||||||| ||||||| ||||||  ||||||||| | || |||||||||||| |  ||||  |||||||| |  || || |  ||||||||||| |||     
T  20491520 tgagtttgtacggagacaagcaaat-gaggttgctcataaattagctaaggcggccttattgtcaactagtctccaggttctatttgaaataccagattg 20491618  T
Q  228 tattaaatacattttgattaatgaaatgctataagtttgttt 269  Q
    |||| || | | |||||||||||||||| |||||||||||||    
T  20491619 tattgaaaatactttgattaatgaaatgttataagtttgttt 20491660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 261
Target Start/End: Original strand, 4084537 - 4084668
Alignment:
Q  129 gagtttgtccggagacgagcaaaacgaggttgcttacaatttagctaaggcgtctatattaccaactagtttgtagattttggttgaaataccaaattat 228  Q
    |||||||| ||||||| |||||| |||||||||| | |||||||| || ||| |  | ||| || |||||||  | || ||||| ||||||||| ||| |    
T  4084537 gagtttgtgcggagacaagcaaa-cgaggttgctcataatttagcaaaagcggccttgttatcagctagtttccaaatattggtagaaataccatattgt 4084635  T
Q  229 attaaatacattttgattaatgaaatgctataa 261  Q
    ||| || |||||||||| |||||||||| ||||    
T  4084636 attgaacacattttgatgaatgaaatgcaataa 4084668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 3840621 - 3840572
Alignment:
Q  214 gaaataccaaattatattaaatacattttgattaatgaaatgctataagt 263  Q
    ||||||||| ||| ||||||| | ||||||||||||||||||||| ||||    
T  3840621 gaaataccagattttattaaacatattttgattaatgaaatgctacaagt 3840572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 96227 - 96285
Alignment:
Q  212 ttgaaataccaaattatattaaatacattttgattaatgaaatgctataagtttgtttc 270  Q
    |||||||| || ||| |||| || ||| |||||||||||||||| ||||||||||||||    
T  96227 ttgaaatatcagattgtattgaacacactttgattaatgaaatgttataagtttgtttc 96285  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 39118080 - 39118034
Alignment:
Q  219 accaaattatattaaatacattttgattaatgaaatgctataagttt 265  Q
    |||||||| |||| || |||||||||||||||||||| |||||||||    
T  39118080 accaaattttattgaacacattttgattaatgaaatgttataagttt 39118034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 10544064 - 10544121
Alignment:
Q  212 ttgaaataccaaattatattaaatacattttgattaatgaaatgctataagtttgttt 269  Q
    ||||||||||| ||| |||| || | | |||||||||||||||| |||||||||||||    
T  10544064 ttgaaataccagattgtattgaaaatactttgattaatgaaatgttataagtttgttt 10544121  T

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